Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G50830 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 8.9e-284 979.5 480 100.0
AL7G50850 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 7.2e-225 783.9 477 83.2
CARHR258220 Cardamine hirsuta HOM05D003519 ORTHO05D004443 1.0e-194 683.7 476 71.4
AT5G39460 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 1.7e-194 682.9 477 74.2
AL7G50820 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 1.7e-189 666.4 479 71.6
CARHR262880 Cardamine hirsuta HOM05D003519 ORTHO05D004443 3.4e-182 642.1 478 70.3
AT5G39480 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 6.3e-181 637.9 478 69.2
CARHR262890 Cardamine hirsuta HOM05D003519 ORTHO05D004443 1.3e-178 630.2 474 67.9
AT5G39490 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 2.3e-175 619.4 477 67.7
Sp7g02490 Schrenkiella parvula HOM05D003519 ORTHO05D004443 1.6e-168 596.7 486 64.8
Aa31LG9G16540 Aethionema arabicum HOM05D003519 ORTHO05D004443 6.0e-163 578.2 482 62.2
Sp7g02470 Schrenkiella parvula HOM05D003519 ORTHO05D004443 4.4e-158 562.0 487 62.4
AT5G39450 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 1.9e-156 556.6 478 61.3
AL7G50860 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 1.6e-155 553.5 480 60.6
CARHR262900 Cardamine hirsuta HOM05D003519 ORTHO05D004443 1.5e-153 547.0 484 62.4
Carub.0007s3648 Capsella rubella HOM05D003519 ORTHO05D004443 3.3e-153 545.8 478 60.7
BolC4t26171H Brassica oleracea HOM05D003519 ORTHO05D004443 8.9e-151 537.7 478 59.2
Thhalv10027700m.g Eutrema salsugineum HOM05D003519 ORTHO05D004443 4.4e-150 535.4 483 60.0
Sp7g02520 Schrenkiella parvula HOM05D003519 ORTHO05D004443 2.2e-149 533.1 476 60.1
BcaB06g27331 Brassica carinata HOM05D003519 ORTHO05D004443 1.2e-147 527.3 476 57.6
BcaB06g27330 Brassica carinata HOM05D003519 ORTHO05D004443 3.3e-145 519.2 478 59.4
BcaB06g27312 Brassica carinata HOM05D003519 ORTHO05D004443 2.1e-144 516.5 471 58.2
C04p45890 Brassica napus HOM05D003519 ORTHO05D004443 2.1e-144 516.5 471 58.2
C04p45850 Brassica napus HOM05D003519 ORTHO05D004443 2.0e-142 510.0 472 58.3
A04p12190 Brassica napus HOM05D003519 ORTHO05D004443 2.6e-142 509.6 477 59.5
C04p45840 Brassica napus HOM05D003519 ORTHO05D004443 2.6e-142 509.6 477 58.7
BcaB06g27308 Brassica carinata HOM05D003519 ORTHO05D004443 7.6e-142 508.1 477 58.5
BolC4t26170H Brassica oleracea HOM05D003519 ORTHO05D004443 7.6e-142 508.1 477 58.5
BraA04t16883Z Brassica rapa HOM05D003519 ORTHO05D004443 7.6e-142 508.1 477 59.3
BcaB06g27309 Brassica carinata HOM05D003519 ORTHO05D004443 1.4e-140 503.8 473 58.1
A04p12200 Brassica napus HOM05D003519 ORTHO05D004443 1.4e-140 503.8 481 57.2
THA.LOC104819485 Tarenaya hassleriana HOM05D003519 ORTHO05D004443 4.3e-137 492.3 504 55.2
CARHR262850 Cardamine hirsuta HOM05D003519 ORTHO05D004443 1.4e-135 487.3 476 58.2
BraA04t16884Z Brassica rapa HOM05D003519 ORTHO05D004443 1.7e-133 480.3 471 55.2
A04p12230 Brassica napus HOM05D003519 ORTHO05D004443 7.1e-132 474.9 474 55.7
BcaB06g27311 Brassica carinata HOM05D003519 ORTHO05D004443 4.6e-131 472.2 464 54.3
Sp7g02530 Schrenkiella parvula HOM05D003519 ORTHO05D004443 1.4e-124 450.7 418 59.6
C04p45870 Brassica napus HOM05D003519 ORTHO05D004443 3.0e-122 443.0 468 51.5
A04p12220 Brassica napus HOM05D003519 ORTHO05D004443 1.8e-119 433.7 454 52.2
Atru.chr4.987 Acer truncatum HOM05D003519 ORTHO05D004443 9.0e-119 431.4 498 48.8
Prupe.4G275200 Prunus persica HOM05D003519 ORTHO05D004443 1.2e-118 431.0 508 47.2
Sabra05G0055300 Salix brachista HOM05D003519 ORTHO05D004443 4.5e-118 429.1 503 47.5
CSS0008781 Camellia sinensis var. sinensis HOM05D003519 ORTHO05D004443 6.5e-117 425.2 508 46.3
CSS0040411 Camellia sinensis var. sinensis HOM05D003519 ORTHO05D004443 6.5e-117 425.2 508 46.3
Ciclev10000587m.g Citrus clementina HOM05D003519 ORTHO05D004443 6.5e-117 425.2 510 46.3
Potri.005G067300 Populus trichocarpa HOM05D003519 ORTHO05D004443 8.4e-117 424.9 506 46.8
RcHm_v2.0_Chr2g0122451 Rosa chinensis HOM05D003519 ORTHO05D004443 1.1e-116 424.5 507 46.9
MD15G1134900 Malus domestica HOM05D003519 ORTHO05D004443 5.5e-116 422.2 508 46.7
PGR102G0700 Punica granatum HOM05D003519 ORTHO05D004443 7.2e-116 421.8 509 47.0
Gorai.012G036900 Gossypium raimondii HOM05D003519 ORTHO05D004443 2.1e-115 420.2 509 47.0
FvH4_1g24840 Fragaria vesca HOM05D003519 ORTHO05D004443 2.7e-115 419.9 509 46.4
Gohir.D04G033200 Gossypium hirsutum HOM05D003519 ORTHO05D004443 2.7e-115 419.9 510 47.1
Manes.12G158800 Manihot esculenta HOM05D003519 ORTHO05D004443 2.7e-115 419.9 506 47.4
CANSAT80G2376 Cannabis sativa HOM05D003519 ORTHO05D004443 1.0e-114 417.9 503 45.3
Thecc.01G137200 Theobroma cacao HOM05D003519 ORTHO05D004443 1.3e-114 417.5 512 47.9
Aqoxy5G02420 Aquilegia oxysepala HOM05D003519 ORTHO05D004443 2.3e-114 416.8 503 46.3
Duzib187G0434 Durio zibethinus HOM05D003519 ORTHO05D004443 5.1e-114 415.6 510 45.9
FAN19G3005 Fragaria x ananassa HOM05D003519 ORTHO05D004443 5.1e-114 415.6 494 46.4
Gohir.A05G382700 Gossypium hirsutum HOM05D003519 ORTHO05D004443 1.1e-113 414.5 514 46.1
FAN28G0413 Fragaria x ananassa HOM05D003519 ORTHO05D004443 2.5e-113 413.3 510 46.1
Potri.007G102000 Populus trichocarpa HOM05D003519 ORTHO05D004443 2.5e-113 413.3 503 46.9
BcaB06g27739 Brassica carinata HOM05D003519 ORTHO05D004443 4.3e-113 412.5 477 51.4
FAN26G0860 Fragaria x ananassa HOM05D003519 ORTHO05D004443 5.7e-113 412.1 510 45.9
FAN23G1921 Fragaria x ananassa HOM05D003519 ORTHO05D004443 9.7e-113 411.4 511 45.6
Hma1.2p1_0310F.1_g121010 Hydrangea macrophylla HOM05D003519 ORTHO05D004443 1.3e-112 411.0 506 45.3
QL10p041283 Quercus lobata HOM05D003519 ORTHO05D004443 2.8e-112 409.8 511 45.2
MELO3C008911.2 Cucumis melo HOM05D003519 ORTHO05D004443 3.1e-111 406.4 505 44.6
Phvul.009G154700 Phaseolus vulgaris HOM05D003519 ORTHO05D004443 3.1e-111 406.4 500 47.2
Rhsim08G0000500 Rhododendron simsii HOM05D003519 ORTHO05D004443 4.1e-111 406.0 502 44.8
Nn1g08957 Nelumbo nucifera HOM05D003519 ORTHO05D004443 5.3e-111 405.6 505 45.7
TWI79G1726 Tripterygium wilfordii HOM05D003519 ORTHO05D004443 9.0e-111 404.8 505 45.5
Sabra07G0084100 Salix brachista HOM05D003519 ORTHO05D004443 1.2e-110 404.4 506 46.6
VMungo1309G2829 Vigna mungo HOM05D003519 ORTHO05D004443 1.2e-110 404.4 510 46.3
ClCG04G002210 Citrullus lanatus HOM05D003519 ORTHO05D004443 2.0e-110 403.7 507 45.6
Glyma.06G155700 Glycine max HOM05D003519 ORTHO05D004443 2.0e-110 403.7 499 44.9
arahy.Tifrunner.gnm1.ann1.CM19QL Arachis hypogaea HOM05D003519 ORTHO05D004443 2.6e-110 403.3 507 44.2
Actinidia06577 Actinidia chinensis HOM05D003519 ORTHO05D004443 3.4e-110 402.9 509 44.8
Cpa.g.sc37.5 Carica papaya HOM05D003519 ORTHO05D004443 3.4e-110 402.9 501 46.1
Lsat_1_v5_gn_2_36940 Lactuca sativa HOM05D003519 ORTHO05D004443 3.4e-110 402.9 502 44.8
ECA238G3965 Erigeron canadensis HOM05D003519 ORTHO05D004443 4.5e-110 402.5 497 46.3
CsaV3_4G030500 Cucumis sativus L. HOM05D003519 ORTHO05D004443 5.9e-110 402.1 504 44.6
CiPaw.03G118200 Carya illinoinensis HOM05D003519 ORTHO05D004443 1.0e-109 401.4 512 44.3
DCAR_019993 Daucus carota HOM05D003519 ORTHO05D004443 1.0e-109 401.4 498 43.6
Haze_25334 Corylus avellana HOM05D003519 ORTHO05D004443 2.2e-109 400.2 504 44.2
Cc00_g06200 Coffea canephora HOM05D003519 ORTHO05D004443 6.5e-109 398.7 492 45.3
arahy.Tifrunner.gnm1.ann1.JB39ED Arachis hypogaea HOM05D003519 ORTHO05D004443 8.5e-109 398.3 507 43.8
Hund21800 Selenicereus undatus HOM05D003519 ORTHO05D004443 8.5e-109 398.3 507 45.4
Lalb_Chr23g0272671 Lupinus albus HOM05D003519 ORTHO05D004443 2.5e-108 396.7 495 45.3
TAR625G0887 Trochodendron aralioides HOM05D003519 ORTHO05D004443 2.5e-108 396.7 507 45.2
TAR229G0003 Trochodendron aralioides HOM05D003519 ORTHO05D004443 7.2e-108 395.2 506 44.7
TAR381G0828 Trochodendron aralioides HOM05D003519 ORTHO05D004443 7.2e-108 395.2 506 44.7
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 1.6e-107 394.0 509 44.0
Sc09g0002240 Simmondsia chinensis HOM05D003519 ORTHO05D004443 2.1e-107 393.7 504 46.0
Eucgr.H05140 Eucalyptus grandis HOM05D003519 ORTHO05D004443 3.6e-107 392.9 507 45.8
Lalb_Chr11g0068601 Lupinus albus HOM05D003519 ORTHO05D004443 4.6e-107 392.5 497 44.3
TPR.G33582 Trifolium pratense HOM05D003519 ORTHO05D004443 2.3e-106 390.2 497 44.1
Glyma.05G194000 Glycine max HOM05D003519 ORTHO05D004443 5.1e-106 389.0 510 44.3
GSVIVG01022332001 Vitis vinifera HOM05D003519 ORTHO05D004443 5.1e-106 389.0 483 47.4
Ca_16980_v3 Cicer arietinum L. HOM05D003519 ORTHO05D004443 1.1e-105 387.9 498 45.6
Nitab4.5_0003068g0020 Nicotiana tabacum HOM05D003519 ORTHO05D004443 1.1e-105 387.9 513 43.1
Sed0005441 Sechium edule HOM05D003519 ORTHO05D004443 1.1e-105 387.9 503 44.3
EL10Ac4g09622 Beta vulgaris HOM05D003519 ORTHO05D004443 2.5e-105 386.7 508 45.1
SalBow5G2644 Salvia bowleyana HOM05D003519 ORTHO05D004443 3.3e-105 386.3 499 43.1
Glyma.08G002000 Glycine max HOM05D003519 ORTHO05D004443 4.3e-105 386.0 511 44.8
Medtr3g096670 Medicago truncatula HOM05D003519 ORTHO05D004443 4.3e-105 386.0 498 44.0
Ah.04g157880 Amaranthus hybridus HOM05D003519 ORTHO05D004443 7.4e-105 385.2 520 44.8
Migut.L00390 Erythranthe guttata HOM05D003519 ORTHO05D004443 7.4e-105 385.2 492 44.9
Psat5g059880 Pisum sativum HOM05D003519 ORTHO05D004443 7.4e-105 385.2 499 44.3
MSTRG.15264 Avicennia marina HOM05D003519 ORTHO05D004443 1.3e-104 384.4 504 43.1
VMungo0251G1228 Vigna mungo HOM05D003519 ORTHO05D004443 3.7e-104 382.9 506 45.1
Sopen04g030250 Solanum pennellii HOM05D003519 ORTHO05D004443 4.8e-104 382.5 513 42.1
PSO832G0337 Papaver somniferum HOM05D003519 ORTHO05D004443 6.3e-104 382.1 512 41.4
Solyc04g076520.3 Solanum lycopersicum HOM05D003519 ORTHO05D004443 1.1e-103 381.3 513 42.3
PGSC0003DMG400009336 Solanum tuberosum HOM05D003519 ORTHO05D004443 1.1e-103 381.3 513 42.1
CAN.G475.7 Capsicum annuum HOM05D003519 ORTHO05D004443 4.1e-103 379.4 501 43.5
Nitab4.5_0000227g0340 Nicotiana tabacum HOM05D003519 ORTHO05D004443 6.9e-103 378.6 507 43.0
AUR62000513 Chenopodium quinoa HOM05D003519 ORTHO05D004443 4.5e-102 375.9 509 44.0
Lj2A614T30 Lonicera japonica HOM05D003519 ORTHO05D004443 4.5e-102 375.9 495 43.4
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 5.0e-101 372.5 463 45.4
Peaxi162Scf00711g00512 Petunia axillaris HOM05D003519 ORTHO05D004443 1.9e-100 370.5 509 43.0
Phvul.002G274400 Phaseolus vulgaris HOM05D003519 ORTHO05D004443 2.5e-100 370.2 489 44.4
arahy.Tifrunner.gnm1.ann1.I6W5T3 Arachis hypogaea HOM05D003519 ORTHO05D004443 3.2e-100 369.8 477 45.1
SGA_v2.0_scaffold3G01832 Striga asiatica HOM05D003519 ORTHO05D004443 4.2e-100 369.4 505 42.2
Oeu050088.1 Olea europaea HOM05D003519 ORTHO05D004443 5.1e-98 362.5 467 42.2
Oeu050089.1 Olea europaea HOM05D003519 ORTHO05D004443 5.1e-98 362.5 467 42.2
MBI03_g39654_MAGBIO Magnolia biondii HOM05D003519 ORTHO05D004443 6.7e-98 362.1 518 40.3
arahy.Tifrunner.gnm1.ann1.02NDWK Arachis hypogaea HOM05D003519 ORTHO05D004443 2.0e-97 360.5 475 43.4
CDE06G0958 Ceratophyllum demersum HOM05D003519 ORTHO05D004443 3.3e-97 359.8 492 41.5
ATR0138G021 Amborella trichopoda HOM05D003519 ORTHO05D004443 2.9e-93 346.7 534 39.7
PSO832G1142 Papaver somniferum HOM05D003519 ORTHO05D004443 1.4e-90 337.8 513 39.8
Migut.L00372 Erythranthe guttata HOM05D003519 ORTHO05D004443 4.4e-89 332.8 485 40.6
Ca_17623_v3 Cicer arietinum L. HOM05D003519 ORTHO05D004443 7.5e-89 332.0 553 38.2
Migut.O00452 Erythranthe guttata HOM05D003519 ORTHO05D004443 7.5e-89 332.0 485 40.6
Psat7g045400 Pisum sativum HOM05D003519 ORTHO05D004443 9.7e-89 331.6 548 38.7
Migut.L00523 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.7e-88 330.9 491 39.5
Migut.L00383 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.8e-88 330.1 486 40.3
TPR.G37338 Trifolium pratense HOM05D003519 ORTHO05D004443 4.5e-86 322.8 591 36.0
Migut.L00387 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.2e-85 320.5 480 39.2
SEGI_06784 Sequoiadendron giganteum HOM05D003519 ORTHO05D004443 2.2e-85 320.5 543 38.1
Medtr8g094190 Medicago truncatula HOM05D003519 ORTHO05D004443 1.5e-84 317.8 532 37.0
HPP92_006886 Vanilla planifolia HOM05D003519 ORTHO05D004443 3.0e-82 310.1 496 40.5
PSO063G6904 Papaver somniferum HOM05D003519 ORTHO05D004443 8.8e-82 308.5 425 41.2
BcaB06g27313 Brassica carinata HOM05D003519 ORTHO05D024023 9.8e-81 305.1 334 51.8
Migut.L00389 Erythranthe guttata HOM05D003519 ORTHO05D004443 9.1e-79 298.5 478 36.2
Migut.L00388 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.7e-78 297.0 480 36.2
Migut.L00374 Erythranthe guttata HOM05D003519 ORTHO05D004443 4.5e-78 296.2 481 37.2
PSO063G4810 Papaver somniferum HOM05D003519 ORTHO05D004443 3.0e-74 283.5 464 36.6
HPP92_025170 Vanilla planifolia HOM05D003519 ORTHO05D004443 2.8e-72 276.9 432 41.9
CDE08G0134 Ceratophyllum demersum HOM05D003519 ORTHO05D004443 1.4e-71 274.6 407 39.6
Pp3c17_16670 Physcomitrium patens HOM05D003519 ORTHO05D004443 1.5e-68 264.6 513 35.9
Migut.L00373 Erythranthe guttata HOM05D003519 ORTHO05D004443 9.5e-68 261.9 445 36.6
Migut.L00382 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.8e-67 260.4 476 34.7
Migut.L00522 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.8e-67 260.4 476 34.7
Pp3c14_13020 Physcomitrium patens HOM05D003519 ORTHO05D004443 1.1e-63 248.4 530 33.8
Migut.L00566 Erythranthe guttata HOM05D003519 ORTHO05D004443 3.0e-61 240.4 374 39.8
C04p45910 Brassica napus HOM05D003519 ORTHO05D024023 6.6e-61 239.2 244 54.9
BcaC02g08848 Brassica carinata HOM05D003519 ORTHO05D021767 6.2e-59 232.6 160 71.2
BcaC02g08849 Brassica carinata HOM05D003519 ORTHO05D021767 6.2e-59 232.6 160 71.2
BolC4t26173H Brassica oleracea HOM05D003519 ORTHO05D024023 1.8e-58 231.1 216 58.8
Migut.L00524 Erythranthe guttata HOM05D003519 ORTHO05D004443 5.2e-58 229.6 483 34.0
BcaB06g27333 Brassica carinata HOM05D003519 ORTHO05D004443 2.2e-56 224.2 154 70.8
Migut.L00384 Erythranthe guttata HOM05D003519 ORTHO05D004443 8.3e-56 222.2 374 37.4
Migut.L00375 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.0e-54 217.6 228 48.7
BolC4t26573H Brassica oleracea HOM05D003519 ORTHO05D021767 7.8e-54 215.7 231 53.2
Migut.L00385 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.3e-53 214.9 402 35.3
Zm00001eb174460 Zea mays HOM05D003519 ORTHO05D004443 2.3e-53 214.2 486 32.7
COL.COLO4_35769 Corchorus olitorius HOM05D003519 ORTHO05D004443 3.1e-50 203.8 341 38.4
Os08g0105100 Oryza sativa ssp. japonica HOM05D003519 ORTHO05D004443 3.1e-50 203.8 477 32.1
Medtr8g094150 Medicago truncatula HOM05D003519 ORTHO05D004443 3.4e-49 200.3 525 30.7
AagrBONN_evm.TU.Sc2ySwM_228.359 Anthoceros agrestis HOM05D003519 ORTHO05D004443 1.3e-45 188.3 508 30.1
Migut.L00386 Erythranthe guttata HOM05D003519 ORTHO05D004443 3.3e-44 183.7 364 33.0
ATR0582G058 Amborella trichopoda HOM05D003519 ORTHO05D004443 3.6e-43 180.3 177 50.8
PSO832G2795 Papaver somniferum HOM05D003519 ORTHO05D004443 1.6e-35 154.8 361 32.4
BcaB06g27334 Brassica carinata HOM05D003519 ORTHO05D004443 4.7e-35 153.3 170 53.5
BraA04t17193Z Brassica rapa HOM05D003519 ORTHO05D021767 4.7e-35 153.3 98 74.5
A04p15580 Brassica napus HOM05D003519 ORTHO05D021767 3.1e-34 150.6 296 35.8
C04p49850 Brassica napus HOM05D003519 ORTHO05D021767 5.2e-34 149.8 91 75.8
ATR0527G001 Amborella trichopoda HOM05D003519 ORTHO05D004443 1.4e-23 115.2 107 53.3
Lj4g0010335 Lotus japonicus HOM05D003519 ORTHO05D004443 7.9e-22 109.4 177 44.1
SMO137G0098 Selaginella moellendorffii HOM05D003519 ORTHO05D004443 2.5e-20 104.4 142 40.1
AT5G39470 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 1.3e-19 102.1 96 58.3
ATR1000G001 Amborella trichopoda HOM05D003519 ORTHO05D004443 6.9e-18 96.3 92 50.0
MBI03_g31895_MAGBIO Magnolia biondii HOM05D003519 ORTHO05D004443 1.2e-14 85.5 126 42.1
Medtr0095s0110 Medicago truncatula HOM05D003519 ORTHO05D004443 1.5e-12 78.6 77 49.4
AagrBONN_evm.TU.Sc2ySwM_368.1512 Anthoceros agrestis HOM05D003519 ORTHO05D021294 1.3e-11 75.5 125 37.6
Peaxi162Scf00711g00528 Petunia axillaris HOM05D003519 ORTHO05D024023 1.1e-10 72.4 73 46.6
Peaxi162Scf00711g00524 Petunia axillaris HOM05D003519 ORTHO05D004443 1.4e-07 62.0 149 32.2


User provided reference genes

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