Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.6e-48 195.7 95 100.0
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.5e-46 189.1 95 95.8
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 5.9e-46 187.2 95 93.7
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 2.5e-44 181.8 95 89.5
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 3.3e-41 171.4 91 91.2
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 4.8e-40 167.5 91 89.0
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 6.3e-40 167.2 91 90.1
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 8.2e-40 166.8 90 86.7
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 1.1e-39 166.4 91 90.1
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 9.1e-39 163.3 91 86.8
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 9.1e-39 163.3 91 86.8
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 9.1e-39 163.3 91 86.8
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 9.1e-39 163.3 91 86.8
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 9.1e-39 163.3 91 86.8
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 1.5e-38 162.5 91 87.9
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 1.3e-37 159.5 90 84.4
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 1.3e-37 159.5 90 84.4
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 1.7e-37 159.1 90 84.4
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 5.0e-37 157.5 91 83.5
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 3.2e-36 154.8 90 82.2
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 3.2e-36 154.8 90 82.2
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 7.2e-36 153.7 90 82.2
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 1.6e-35 152.5 90 83.3
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 1.6e-35 152.5 90 77.8
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 1.6e-35 152.5 90 77.8
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 2.7e-35 151.8 90 77.8
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 2.7e-35 151.8 90 77.8
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 2.7e-35 151.8 89 77.5
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 4.7e-35 151.0 90 77.8
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 4.7e-35 151.0 90 77.8
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 4.7e-35 151.0 90 77.8
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.0e-34 149.8 90 77.8
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 1.4e-34 149.4 90 73.3
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 1.4e-34 149.4 89 74.2
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 1.4e-34 149.4 90 75.6
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 1.4e-34 149.4 89 77.5
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.8e-34 149.1 90 77.8
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.8e-34 149.1 90 77.8
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 3.0e-34 148.3 90 76.7
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 3.9e-34 147.9 89 74.2
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 3.9e-34 147.9 90 75.6
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 3.9e-34 147.9 90 74.4
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 3.9e-34 147.9 89 76.4
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 3.9e-34 147.9 90 75.6
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 5.2e-34 147.5 90 76.7
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 5.2e-34 147.5 90 74.4
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 6.7e-34 147.1 90 76.7
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 6.7e-34 147.1 90 76.7
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 6.7e-34 147.1 90 73.3
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 8.8e-34 146.7 90 75.6
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 8.8e-34 146.7 90 74.4
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 8.8e-34 146.7 89 76.4
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 8.8e-34 146.7 90 74.4
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 1.1e-33 146.4 90 74.4
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.1e-33 146.4 90 75.6
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 1.1e-33 146.4 90 75.6
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.5e-33 146.0 90 75.6
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.5e-33 146.0 90 75.6
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 2.0e-33 145.6 90 74.4
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 2.0e-33 145.6 90 75.6
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 2.0e-33 145.6 90 76.7
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 2.6e-33 145.2 90 73.3
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 2.6e-33 145.2 89 71.9
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 2.6e-33 145.2 88 72.7
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.6e-33 145.2 92 77.2
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 3.3e-33 144.8 90 74.4
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 3.3e-33 144.8 90 74.4
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 4.4e-33 144.4 90 72.2
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 4.4e-33 144.4 90 74.4
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 4.4e-33 144.4 90 74.4
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 4.4e-33 144.4 90 75.6
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 4.4e-33 144.4 90 73.3
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 4.4e-33 144.4 90 73.3
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 5.7e-33 144.1 90 74.4
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 5.7e-33 144.1 90 74.4
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 7.4e-33 143.7 89 70.8
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 7.4e-33 143.7 90 74.4
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.3e-32 142.9 88 71.6
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.3e-32 142.9 90 73.3
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 1.3e-32 142.9 89 74.2
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 1.7e-32 142.5 90 73.3
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.7e-32 142.5 88 75.0
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 1.7e-32 142.5 90 72.2
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 1.7e-32 142.5 88 73.9
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 1.7e-32 142.5 88 73.9
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 1.7e-32 142.5 90 73.3
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 2.2e-32 142.1 83 77.1
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 2.2e-32 142.1 79 81.0
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 2.8e-32 141.7 90 73.3
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 2.8e-32 141.7 90 73.3
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 3.7e-32 141.4 90 73.3
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 3.7e-32 141.4 90 73.3
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 3.7e-32 141.4 90 73.3
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 3.7e-32 141.4 90 73.3
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 6.3e-32 140.6 91 71.4
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 6.3e-32 140.6 90 72.2
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 8.2e-32 140.2 90 73.3
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 8.2e-32 140.2 89 75.3
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 1.1e-31 139.8 89 74.2
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 1.1e-31 139.8 89 74.2
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.4e-31 139.4 85 74.1
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 1.4e-31 139.4 90 72.2
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.4e-31 139.4 90 72.2
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.8e-31 139.0 90 71.1
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.8e-31 139.0 78 82.1
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.4e-31 138.7 88 72.7
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 4.1e-31 137.9 90 71.1
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.1e-31 137.9 90 72.2
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.1e-31 137.9 90 72.2
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 5.3e-31 137.5 88 71.6
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.0e-31 137.1 78 78.2
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 1.6e-30 136.0 91 73.6
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 1.6e-30 136.0 91 73.6
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 3.5e-30 134.8 79 78.5
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.3e-29 132.9 88 68.2
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 1.3e-29 132.9 89 69.7
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.7e-29 132.5 86 72.1
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 3.8e-29 131.3 84 69.0
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 3.8e-29 131.3 90 68.9
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.1e-28 129.8 76 77.6
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 1.5e-28 129.4 88 69.3
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 5.5e-28 127.5 79 73.4
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 5.5e-28 127.5 84 69.0
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.4e-28 126.7 87 69.0
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 1.0e-26 123.2 73 76.7
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 1.4e-26 122.9 90 64.4
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 2.3e-26 122.1 90 68.9
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 5.2e-26 120.9 118 54.2
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 1.2e-25 119.8 86 62.8
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 3.3e-25 118.2 80 67.5
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 4.4e-25 117.9 67 79.1
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 9.7e-25 116.7 67 79.1
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 1.3e-24 116.3 86 64.0
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 3.7e-24 114.8 68 76.5
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 3.7e-24 114.8 68 77.9
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 4.8e-24 114.4 67 79.1
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 1.1e-23 113.2 67 77.6
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.1e-23 113.2 68 76.5
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.1e-23 113.2 68 75.0
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.4e-23 112.8 67 76.1
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 5.3e-23 110.9 113 50.4
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 7.7e-22 107.1 68 75.0
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 8.5e-21 103.6 68 70.6
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.1e-20 103.2 92 56.5
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 2.1e-19 99.0 65 66.2
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 4.7e-19 97.8 82 57.3
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 3.0e-18 95.1 68 66.2
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 6.8e-18 94.0 67 70.1
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.5e-17 92.8 88 56.8
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 2.0e-17 92.4 61 70.5
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.4e-15 86.3 45 88.9
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 1.4e-15 86.3 73 56.2
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 4.5e-14 81.3 95 45.3
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 1.0e-13 80.1 83 47.0
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.9e-13 78.6 48 68.8
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.9e-13 78.6 48 68.8
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.9e-13 78.6 48 68.8
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.9e-13 78.6 48 68.8
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.0e-13 77.8 55 63.6
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 1.5e-12 76.3 86 41.9
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.5e-12 74.3 47 63.8
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.2e-11 73.2 46 71.7
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 1.6e-11 72.8 56 57.1
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 6.1e-11 70.9 46 67.4
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 2.8e-08 62.0 44 63.6
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 6.3e-08 60.8 50 54.0


User provided reference genes

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