Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G50350 Arabidopsis lyrata HOM05D001750 ORTHO05D001825 8.2e-120 433.7 217 100.0
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 1.8e-119 432.6 216 99.5
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 1.2e-118 429.9 216 99.1
BraSC138t45539Z Brassica rapa HOM05D001750 ORTHO05D001825 1.2e-118 429.9 216 99.1
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 1.2e-118 429.9 216 99.1
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 1.2e-118 429.9 216 99.1
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 1.2e-118 429.9 216 99.1
BolSC29t60501H Brassica oleracea HOM05D001750 ORTHO05D001825 2.2e-117 425.6 216 98.1
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 2.2e-117 425.6 216 98.1
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 2.2e-117 425.6 216 98.1
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 2.2e-117 425.6 216 98.1
BolSC46t60963H Brassica oleracea HOM05D001750 ORTHO05D001825 2.2e-117 425.6 216 98.1
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 3.7e-104 381.7 216 88.0
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.4e-103 377.9 216 87.0
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 9.1e-103 377.1 216 87.0
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 9.1e-103 377.1 216 87.0
MELO3C027417.2 Cucumis melo HOM05D001750 ORTHO05D001825 4.5e-102 374.8 216 86.1
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 1.7e-101 372.9 216 84.7
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 1.7e-101 372.9 216 84.7
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 1.7e-101 372.9 216 84.7
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 1.7e-101 372.9 216 84.7
HanXRQChr11g0323711 Helianthus annuus HOM05D001750 ORTHO05D001825 1.7e-101 372.9 216 84.7
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 1.7e-101 372.9 216 84.7
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 2.2e-101 372.5 216 85.2
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 1.1e-100 370.2 216 83.8
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 1.1e-100 370.2 216 83.3
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 1.5e-100 369.8 216 83.3
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 1.5e-100 369.8 216 83.3
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.5e-100 369.8 216 84.3
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 2.5e-100 369.0 216 82.9
SalBow1G5472 Salvia bowleyana HOM05D001750 ORTHO05D001825 2.5e-100 369.0 216 83.8
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 4.2e-100 368.2 216 82.4
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 9.4e-100 367.1 216 86.6
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 9.4e-100 367.1 216 86.6
RcHm_v2.0_CPg0502851 Rosa chinensis HOM05D001750 ORTHO05D001825 1.6e-99 366.3 216 82.9
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 6.1e-99 364.4 216 82.4
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 6.1e-99 364.4 216 81.9
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 6.1e-99 364.4 216 85.2
Medtr4g006150 Medicago truncatula HOM05D001750 ORTHO05D001825 6.1e-99 364.4 216 84.7
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 6.1e-99 364.4 216 84.7
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 6.1e-99 364.4 216 84.7
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 3.0e-98 362.1 216 82.4
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 8.3e-96 354.0 216 82.4
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 2.0e-94 349.4 216 81.0
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 1.9e-92 342.8 218 81.2
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 7.3e-92 340.9 218 81.2
Gohir.1Z049579 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.2e-89 333.6 193 86.0
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 3.2e-87 325.5 216 76.9
Solyc01g017090.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.5e-81 306.6 195 76.4
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 4.9e-80 301.6 216 72.7
Potri.011G084150 Populus trichocarpa HOM05D001750 ORTHO05D001825 9.2e-79 297.4 216 70.8
BolC6t36206H Brassica oleracea HOM05D001750 ORTHO05D001825 3.6e-75 285.4 156 94.9
Gorai.013G022800 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.2e-71 272.3 180 78.3
BolSC49t61138H Brassica oleracea HOM05D001750 ORTHO05D001825 6.8e-66 254.6 130 98.5
HanXRQChr01g0020101 Helianthus annuus HOM05D001750 ORTHO05D001825 1.7e-64 250.0 178 73.6
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 1.7e-61 240.0 188 70.2
Eucgr.B00850 Eucalyptus grandis HOM05D001750 ORTHO05D001825 2.8e-59 232.6 202 64.4
Gohir.A04G039180 Gossypium hirsutum HOM05D001750 ORTHO05D001825 8.1e-59 231.1 121 91.7
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 8.1e-59 231.1 121 91.7
Thhalv10024000m.g Eutrema salsugineum HOM05D001750 ORTHO05D001825 1.7e-56 223.4 150 74.7
Solyc03g013620.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.7e-56 223.4 150 74.7
Lalb_Chr16g0388561 Lupinus albus HOM05D001750 ORTHO05D001825 5.4e-55 218.4 166 70.5
Hma1.2p1_0472F.1_g159730 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.7e-54 216.1 114 89.5
PGSC0003DMG400020529 Solanum tuberosum HOM05D000729 ORTHO05D001063 2.5e-52 209.5 164 69.5
Hma1.2p1_0066F.1_g036370 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 4.8e-51 205.3 106 90.6
Lalb_Chr07g0191711 Lupinus albus HOM05D001750 ORTHO05D001825 1.2e-46 190.7 124 80.6
Gorai.005G127100 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.0e-45 187.6 193 54.9
Gorai.006G035300 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.0e-45 186.0 154 68.8
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 6.7e-45 184.9 201 54.2
Nitab4.5_0007400g0030 Nicotiana tabacum HOM05D001750 ORTHO05D001825 6.7e-45 184.9 223 52.0
Gohir.D13G020450 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.5e-44 183.7 119 79.8
SMO086G0048 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 7.4e-44 181.4 202 51.5
Psat0s3763g0040 Pisum sativum HOM05D001750 ORTHO05D001825 4.9e-40 168.7 86 93.0
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 9.3e-39 164.5 82 92.7
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 7.9e-38 161.4 112 72.3
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 1.0e-37 161.0 82 91.5
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.5e-36 157.1 82 89.0
Oeu010691.1 Olea europaea HOM05D001750 ORTHO05D001825 1.6e-35 153.7 82 89.0
Hund04278 Selenicereus undatus HOM05D001750 ORTHO05D001825 7.6e-33 144.8 144 55.6
Gorai.005G170400 Gossypium raimondii HOM05D001750 ORTHO05D001825 9.3e-31 137.9 216 39.8
Solyc11g021190.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.2e-30 137.5 102 67.6
Gorai.008G266700 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.0e-29 134.4 71 87.3
Gohir.D02G151844 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.3e-29 133.3 216 38.4
BolC6t36205H Brassica oleracea HOM05D001750 ORTHO05D001825 2.5e-28 129.8 61 98.4
Nitab4.5_0007104g0110 Nicotiana tabacum HOM05D001750 ORTHO05D001825 3.7e-27 125.9 111 60.4
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 3.7e-27 125.9 61 95.1
Solyc02g032320.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.1e-26 122.9 69 84.1
Ciclev10013962m.g Citrus clementina HOM05D001750 ORTHO05D001825 5.3e-26 122.1 61 91.8
Ciclev10013986m.g Citrus clementina HOM05D001750 ORTHO05D001825 5.3e-26 122.1 61 91.8
Ciclev10014000m.g Citrus clementina HOM05D001750 ORTHO05D001825 5.3e-26 122.1 61 91.8
Ciclev10018422m.g Citrus clementina HOM05D001750 ORTHO05D001825 5.3e-26 122.1 61 91.8
Ciclev10027639m.g Citrus clementina HOM05D001750 ORTHO05D001825 5.3e-26 122.1 61 91.8
Ciclev10027648m.g Citrus clementina HOM05D001750 ORTHO05D001825 5.3e-26 122.1 61 91.8
Ciclev10030454m.g Citrus clementina HOM05D001750 ORTHO05D001825 5.3e-26 122.1 61 91.8
Migut.D01382 Erythranthe guttata HOM05D001750 ORTHO05D001825 1.2e-25 120.9 105 60.0
Solyc11g021195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.9e-25 118.6 105 61.0
HanXRQChr17g0557801 Helianthus annuus HOM05D001750 ORTHO05D001825 5.0e-24 115.5 88 71.6
Solyc02g011720.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.0e-24 115.5 197 38.6
Thhalv10023164m.g Eutrema salsugineum HOM05D001750 ORTHO05D001825 6.5e-24 115.2 53 100.0
TPR.G28398 Trifolium pratense HOM05D001750 ORTHO05D001825 8.5e-24 114.8 61 88.5
GSVIVG01004972001 Vitis vinifera HOM05D001750 ORTHO05D001825 1.9e-23 113.6 57 91.2
Eucgr.G01321 Eucalyptus grandis HOM05D000445 ORTHO05D000314 5.5e-23 112.1 83 74.7
HanXRQChr00c0718g0577001 Helianthus annuus HOM05D001750 ORTHO05D001825 3.9e-21 105.9 106 59.4
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 2.5e-20 103.2 84 66.7
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 4.3e-20 102.4 171 36.8
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 1.3e-19 100.9 114 47.4
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 1.3e-19 100.9 114 47.4
Zm00001eb384540 Zea mays HOM05D001750 ORTHO05D001825 1.3e-19 100.9 114 47.4
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 1.3e-19 100.9 114 47.4
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 1.3e-19 100.9 114 47.4
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 1.3e-19 100.9 114 47.4
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 1.3e-19 100.9 114 47.4
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 1.3e-19 100.9 114 47.4
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 2.2e-19 100.1 131 44.3
Gorai.002G182500 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.7e-19 99.4 56 78.6
BraSC48t46283Z Brassica rapa HOM05D001750 ORTHO05D001825 1.1e-18 97.8 128 42.2
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 1.4e-18 97.4 144 39.6
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 1.8e-18 97.1 126 42.9
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 1.8e-18 97.1 126 42.9
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 1.8e-18 97.1 131 42.0
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 5.3e-18 95.5 125 43.2
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 6.9e-18 95.1 117 44.4
Psat0s8829g0080 Pisum sativum HOM05D001750 ORTHO05D001825 9.1e-18 94.7 200 34.0
EL10As4g23402 Beta vulgaris HOM05D001750 ORTHO05D001825 1.5e-17 94.0 45 97.8
FvH4_6g34420 Fragaria vesca HOM05D001750 ORTHO05D001825 1.5e-17 94.0 117 44.4
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 1.5e-17 94.0 117 44.4
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 2.6e-17 93.2 114 44.7
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 2.6e-17 93.2 114 44.7
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 4.5e-17 92.4 120 43.3
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.5e-17 92.4 114 45.6
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 5.9e-17 92.0 114 44.7
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 1.0e-16 91.3 114 44.7
Gohir.D02G112150 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.2e-16 90.1 61 78.7
Nn117s43413 Nelumbo nucifera HOM05D001750 ORTHO05D001825 8.5e-16 88.2 125 41.6
SEGI_04456 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 2.5e-15 86.7 137 41.6
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 7.2e-15 85.1 114 43.0
Nn117s43418 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.2e-15 85.1 114 43.0
Nn1g10108 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.2e-15 85.1 114 43.0
Nn1g10189 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.2e-15 85.1 114 43.0
Nn1g10194 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.2e-15 85.1 114 43.0
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.6e-14 84.0 104 46.2
Psat0s6638g0080 Pisum sativum HOM05D001750 ORTHO05D001825 1.6e-14 84.0 40 95.0
Psat4g065280 Pisum sativum HOM05D001750 ORTHO05D001825 1.6e-14 84.0 40 95.0
arahy.Tifrunner.gnm1.ann1.SXA5PB Arachis hypogaea HOM05D000445 ORTHO05D000314 4.6e-14 82.4 45 88.9
CAN.G8.25 Capsicum annuum HOM05D001750 ORTHO05D001825 3.0e-13 79.7 60 71.7
Gohir.D09G044501 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.1e-13 79.0 40 90.0
SEGI_05810 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 6.7e-13 78.6 123 43.1
Medtr8g059760 Medicago truncatula HOM05D001750 ORTHO05D011738 1.5e-12 77.4 59 67.8
Gohir.A07G167090 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.3e-12 76.3 39 89.7
Peaxi162Scf00451g00046 Petunia axillaris HOM05D001750 ORTHO05D001825 1.7e-11 73.9 72 51.4
Solyc00g500098.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.7e-11 73.9 72 51.4
Solyc00g500271.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.7e-11 73.9 72 51.4
Solyc00g500317.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.7e-11 73.9 72 51.4
Lj2C1233T24 Lonicera japonica HOM05D001750 ORTHO05D001825 8.2e-11 71.6 72 50.0
Nitab4.5_0000593g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 8.2e-11 71.6 72 50.0
FAN14G4205 Fragaria x ananassa HOM05D001750 ORTHO05D001825 1.1e-10 71.2 83 45.8
Nitab4.5_0000172g0080 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.4e-10 70.9 72 50.0
unitig_87.g28030 Utricularia gibba HOM05D001750 ORTHO05D001825 1.4e-10 70.9 72 48.6
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.4e-10 70.1 72 50.0
SHI35586 Sapria himalayana HOM05D001750 ORTHO05D001825 3.1e-10 69.7 131 36.6
arahy.Tifrunner.gnm1.ann1.GEK8SS Arachis hypogaea HOM05D001750 ORTHO05D001825 1.2e-09 67.8 40 75.0
Lalb_Chr02g0153701 Lupinus albus HOM05D001750 ORTHO05D001825 2.0e-09 67.0 72 47.2
HanXRQChr00c0328g0573591 Helianthus annuus HOM05D001750 ORTHO05D001825 3.4e-09 66.2 62 61.3
Nitab4.5_0000172g1800 Nicotiana tabacum HOM05D001750 ORTHO05D001825 7.7e-09 65.1 72 48.6
Nitab4.5_0007979g0040 Nicotiana tabacum HOM05D000729 ORTHO05D002596 1.0e-08 64.7 40 70.0
Peaxi162Scf00111g00125 Petunia axillaris HOM05D000478 ORTHO05D000345 1.2e-06 57.8 58 50.0


User provided reference genes

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