Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 1.9e-278 961.8 482 100.0
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 3.5e-256 887.9 482 93.2
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 1.5e-254 882.5 480 91.7
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 3.2e-233 811.6 484 84.9
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 2.0e-230 802.4 478 84.7
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 2.9e-226 788.5 480 83.5
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 1.7e-221 772.7 476 81.5
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 3.8e-202 708.4 425 83.5
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 1.7e-197 693.0 425 82.1
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 9.2e-196 687.2 475 72.0
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 1.7e-194 682.9 402 84.6
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 6.2e-176 621.3 448 68.3
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 2.0e-174 616.3 446 68.6
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 2.9e-173 612.5 442 68.8
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 8.3e-173 610.9 446 68.4
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 9.2e-172 607.4 442 68.3
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 1.6e-171 606.7 443 68.4
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 2.7e-171 605.9 419 71.8
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 1.5e-169 600.1 445 67.9
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.5e-169 600.1 443 67.7
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 4.3e-169 598.6 456 64.7
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 5.6e-169 598.2 440 68.0
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 5.6e-169 598.2 452 65.7
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 9.5e-169 597.4 449 66.1
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 2.1e-168 596.3 445 65.4
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 1.1e-167 594.0 431 66.6
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 2.4e-167 592.8 445 67.0
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 1.2e-166 590.5 441 66.0
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 1.5e-166 590.1 461 63.1
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 2.6e-166 589.3 425 67.1
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 3.4e-166 589.0 441 66.0
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 7.6e-166 587.8 450 65.1
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 7.6e-166 587.8 425 66.4
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 2.2e-165 586.3 441 65.3
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 2.2e-165 586.3 441 65.5
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 4.9e-165 585.1 424 67.7
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 1.9e-164 583.2 441 65.5
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 7.1e-164 581.3 445 64.3
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 1.6e-163 580.1 411 69.3
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 4.6e-163 578.6 414 67.1
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 3.0e-162 575.9 411 68.1
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 6.6e-162 574.7 418 66.5
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.5e-161 573.5 452 65.3
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.5e-161 573.5 448 64.7
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 2.5e-161 572.8 416 68.0
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 4.3e-161 572.0 413 67.6
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.2e-160 570.5 440 65.2
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.2e-160 570.5 433 64.7
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 1.6e-160 570.1 470 61.1
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 1.6e-160 570.1 441 66.0
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 1.6e-160 570.1 478 61.5
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 1.6e-160 570.1 499 58.3
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 2.1e-160 569.7 415 68.2
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 8.1e-160 567.8 413 65.9
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 4.0e-159 565.5 472 62.5
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 6.9e-159 564.7 386 70.5
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 1.5e-158 563.5 474 62.7
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 7.6e-158 561.2 421 64.4
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 2.9e-157 559.3 416 67.1
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 2.4e-156 556.2 446 65.2
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 5.4e-156 555.1 414 66.7
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 4.6e-155 552.0 447 63.8
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 1.0e-154 550.8 420 63.6
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 1.0e-154 550.8 491 58.5
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 2.3e-154 549.7 463 62.6
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.3e-154 549.7 445 62.2
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 5.1e-154 548.5 409 65.3
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 1.1e-153 547.4 446 62.6
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.3e-152 543.9 403 66.7
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 3.1e-151 539.3 487 57.7
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 7.6e-150 534.6 444 61.5
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 9.9e-150 534.3 425 63.5
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 6.4e-149 531.6 477 58.3
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 1.9e-148 530.0 466 59.0
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 5.4e-148 528.5 491 58.2
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 2.7e-147 526.2 445 60.2
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 2.7e-147 526.2 427 63.0
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 6.0e-147 525.0 470 57.4
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 4.8e-144 515.4 420 61.0
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 1.2e-142 510.8 387 65.9
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.5e-142 510.4 421 61.0
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 1.4e-140 503.8 572 49.7
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.4e-140 503.8 421 62.0
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 2.1e-139 500.0 426 59.2
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.5e-139 499.2 477 56.0
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.0e-138 497.7 444 58.6
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 2.4e-135 486.5 377 63.4
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 5.3e-135 485.3 419 56.3
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 1.4e-132 477.2 341 68.0
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 3.2e-132 476.1 412 57.3
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 1.0e-130 471.1 341 68.0
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.8e-122 443.7 436 54.8
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 2.4e-119 433.3 425 54.4
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 2.4e-119 433.3 324 65.4
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 1.7e-117 427.2 469 48.4
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 1.6e-115 420.6 341 62.2
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 2.2e-112 410.2 424 53.5
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 1.2e-102 377.9 416 48.6
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.6e-102 377.5 320 60.9
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 9.7e-97 358.2 275 66.9
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 3.5e-86 323.2 212 79.2
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 3.5e-86 323.2 288 59.7
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 8.3e-80 302.0 238 65.1
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 5.4e-79 299.3 302 49.0
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 1.7e-77 294.3 184 75.5
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 6.4e-72 275.8 194 68.0
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 3.1e-66 256.9 237 58.6
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.5e-65 254.6 150 82.7
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 3.6e-59 233.4 167 68.9
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 7.1e-55 219.2 310 43.5
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.4e-50 204.9 187 59.4
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 5.6e-44 183.0 111 82.0
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 4.9e-40 169.9 257 38.1
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 3.2e-39 167.2 150 52.7
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 4.2e-39 166.8 103 81.6
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 2.3e-37 161.0 128 59.4
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 1.9e-36 157.9 120 63.3
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 1.3e-35 155.2 96 81.2
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 1.5e-33 148.3 96 71.9
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 2.3e-29 134.4 83 69.9
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 6.7e-29 132.9 236 35.6
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 7.4e-28 129.4 109 66.1
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 1.1e-26 125.6 329 32.5
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 1.3e-24 118.6 476 26.9
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 4.3e-20 103.6 485 25.4
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 7.6e-17 92.8 305 26.2
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 3.2e-15 87.4 165 38.2
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.6e-14 85.1 135 37.8
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.5e-14 84.0 48 81.2
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 8.7e-13 79.3 46 76.1
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 7.4e-12 76.3 42 83.3
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 3.4e-09 67.4 52 57.7
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 5.9e-09 66.6 55 54.5
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 1.3e-08 65.5 49 65.3
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 2.1e-06 58.2 52 57.7
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 2.1e-06 58.2 41 68.3
Sp3g32050 Schrenkiella parvula HOM05D002474 ORTHO05D006727 2.7e-06 57.8 26 92.3


User provided reference genes

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