Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 0.0e+00 1323.5 687 100.0
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 0.0e+00 1155.2 695 88.8
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 0.0e+00 1088.9 685 83.2
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 2.9e-243 845.5 585 77.1
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 9.9e-236 820.5 698 65.6
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 4.5e-212 741.9 719 59.9
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 4.1e-205 718.8 706 60.5
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 1.4e-192 677.2 706 57.2
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 8.8e-192 674.5 730 56.0
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 8.2e-190 667.9 696 57.8
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 2.4e-189 666.4 703 57.9
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 5.3e-189 665.2 703 57.6
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 3.7e-174 615.9 697 53.1
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 1.1e-173 614.4 703 54.6
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 1.9e-130 470.7 700 44.7
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 4.4e-127 459.5 693 44.6
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 1.7e-126 457.6 726 41.9
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 3.0e-123 446.8 686 43.4
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 1.4e-117 427.9 692 41.9
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 9.3e-117 425.2 711 40.8
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 3.3e-114 416.8 689 40.9
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 5.6e-114 416.0 719 40.8
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 1.8e-112 411.0 688 40.6
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 4.9e-110 402.9 677 40.3
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 1.7e-107 394.4 680 39.3
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 6.6e-107 392.5 684 38.2
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 2.5e-106 390.6 695 37.6
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 4.8e-105 386.3 687 37.8
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 1.4e-104 384.8 692 38.2
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 9.0e-104 382.1 715 38.6
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.4e-103 380.2 693 40.0
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.2e-102 377.5 693 39.7
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 6.4e-102 375.9 685 38.1
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 1.2e-100 371.7 685 37.8
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 1.6e-100 371.3 706 38.1
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 1.6e-100 371.3 712 37.1
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.6e-100 369.8 681 38.5
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 1.3e-99 368.2 686 37.6
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 1.1e-98 365.2 644 40.7
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.5e-98 364.8 713 38.3
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 1.5e-98 364.8 684 37.9
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 4.3e-98 363.2 655 37.4
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 9.6e-98 362.1 697 36.7
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 3.1e-96 357.1 689 36.6
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.0e-95 354.4 682 37.4
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 1.7e-94 351.3 705 37.0
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 1.7e-94 351.3 713 37.9
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 2.5e-93 347.4 677 35.7
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 3.2e-93 347.1 712 36.5
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 6.7e-91 339.3 710 36.6
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 1.9e-90 337.8 695 37.1
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 4.3e-90 336.7 705 36.0
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 9.6e-90 335.5 701 35.1
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 1.1e-88 332.0 729 34.8
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.4e-88 331.6 709 35.0
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.2e-87 328.6 736 35.5
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 2.6e-87 327.4 689 34.4
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 2.5e-85 320.9 690 34.3
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.7e-84 317.4 413 45.3
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 3.6e-84 317.0 700 34.3
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 1.0e-83 315.5 681 34.1
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 5.1e-83 313.2 694 36.2
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 5.1e-83 313.2 694 36.2
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 6.7e-83 312.8 713 34.6
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 7.4e-82 309.3 705 33.9
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 9.7e-82 308.9 589 36.3
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.5e-79 301.6 708 34.5
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.0e-78 298.9 675 34.8
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 7.2e-77 292.7 716 33.9
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 1.6e-76 291.6 716 33.9
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 3.6e-76 290.4 685 31.7
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.8e-75 288.1 517 41.6
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 2.0e-74 284.6 683 31.5
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 5.3e-72 276.6 728 32.4
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 2.2e-70 271.2 735 32.0
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 5.0e-70 270.0 622 35.0
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 1.1e-69 268.9 714 32.8
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 9.4e-69 265.8 650 34.0
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 1.6e-68 265.0 581 35.6
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 3.6e-68 263.8 542 35.8
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 4.7e-68 263.5 629 33.4
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 6.7e-67 259.6 657 32.9
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 8.8e-67 259.2 683 32.7
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 2.0e-66 258.1 560 36.1
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 3.3e-66 257.3 560 36.1
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 1.7e-65 255.0 727 31.2
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 9.1e-64 249.2 655 32.2
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.6e-63 248.4 653 32.3
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 2.0e-63 248.1 628 33.8
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 1.6e-60 238.4 677 31.0
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 8.0e-60 236.1 287 51.2
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.4e-56 224.6 584 32.2
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 1.6e-52 211.8 433 39.0
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 3.6e-52 210.7 686 30.2
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 2.6e-50 204.5 395 35.2
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.6e-47 195.3 339 39.5
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 4.5e-47 193.7 695 26.5
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 8.5e-46 189.5 286 42.0
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 1.6e-44 185.3 704 27.1
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 1.8e-40 171.8 664 27.6
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 7.7e-39 166.4 335 37.0
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.3e-33 149.1 536 29.3
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 1.3e-30 139.0 693 24.5
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 1.5e-29 135.6 368 30.2
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 3.6e-28 131.0 500 27.8
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 2.0e-26 125.2 640 25.6
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 5.8e-26 123.6 404 27.2
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.7e-25 122.1 344 32.0
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 6.4e-25 120.2 234 30.8
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 5.4e-16 90.5 333 27.6
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 1.2e-15 89.4 337 24.3
BcaC07g39321 Brassica carinata HOM05D006730 ORTHO05D008189 5.1e-14 84.0 81 56.8
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 1.5e-10 72.4 168 28.6
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 4.4e-10 70.9 127 37.0
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 4.4e-10 70.9 90 43.3
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 9.2e-08 63.2 96 39.6
Dinv05092 Davidia involucrata HOM05D006730 ORTHO05D008189 5.1e-06 57.4 58 51.7


User provided reference genes

Program Settings