Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 6.2e-131 471.1 233 100.0
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 1.7e-128 463.0 233 97.9
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 3.0e-125 452.2 233 95.3
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 1.4e-119 433.3 233 90.1
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.3e-117 426.0 233 90.6
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 3.9e-117 425.2 233 89.7
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 8.6e-117 424.1 233 89.3
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 3.3e-116 422.2 233 89.3
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 2.8e-115 419.1 232 87.9
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 3.1e-114 415.6 233 88.4
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.2e-112 409.5 233 85.8
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.1e-110 402.9 234 84.6
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 2.2e-104 382.9 232 80.6
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 1.0e-101 374.0 229 77.3
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 1.3e-101 373.6 233 76.8
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.3e-101 373.6 229 77.3
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 3.0e-101 372.5 229 76.9
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.1e-100 370.5 228 77.2
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 1.5e-100 370.2 239 74.5
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 2.5e-100 369.4 226 77.0
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 2.8e-99 365.9 228 75.4
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.2e-99 364.8 229 76.0
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 6.2e-99 364.8 228 75.9
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 1.1e-98 364.0 214 85.0
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 1.1e-98 364.0 229 75.5
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.4e-98 362.8 233 73.0
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 4.0e-98 362.1 214 84.6
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 6.9e-98 361.3 228 75.9
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 9.0e-98 360.9 228 75.0
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.5e-97 360.1 233 73.4
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 2.0e-97 359.8 248 71.4
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 2.6e-97 359.4 229 73.4
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 2.6e-97 359.4 221 76.5
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 5.8e-97 358.2 229 74.2
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.8e-97 358.2 228 75.4
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 9.9e-97 357.5 229 73.8
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 9.9e-97 357.5 228 75.9
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.3e-96 357.1 233 73.4
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.3e-96 357.1 233 73.4
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.7e-96 356.7 228 73.7
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.9e-96 355.9 228 74.6
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 3.8e-96 355.5 229 73.4
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 3.8e-96 355.5 228 73.2
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 6.4e-96 354.8 232 72.4
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 8.4e-96 354.4 228 74.6
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 1.4e-95 353.6 228 73.7
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 2.4e-95 352.8 229 72.9
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.2e-95 352.1 228 73.7
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 5.5e-95 351.7 243 69.5
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 7.1e-95 351.3 232 72.0
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 4.6e-94 348.6 229 73.8
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 1.0e-93 347.4 237 70.5
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.0e-93 347.4 230 70.9
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.0e-93 347.4 228 72.8
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 1.0e-93 347.4 233 71.2
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 1.3e-93 347.1 221 74.7
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 5.1e-93 345.1 221 74.2
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 6.7e-93 344.7 229 72.1
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 6.7e-93 344.7 233 70.4
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 1.5e-92 343.6 233 70.8
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 4.3e-92 342.0 228 71.9
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 5.6e-92 341.7 228 72.4
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 7.4e-92 341.3 231 70.1
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 7.4e-92 341.3 233 70.0
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 7.4e-92 341.3 232 69.4
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.6e-91 340.1 233 70.8
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 1.6e-91 340.1 233 71.2
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 2.8e-91 339.3 233 71.7
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 4.8e-91 338.6 221 72.4
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 4.8e-91 338.6 233 71.7
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 6.2e-91 338.2 233 70.0
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 3.1e-90 335.9 229 69.9
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 6.9e-90 334.7 179 92.2
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 2.0e-89 333.2 230 70.0
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 2.6e-89 332.8 232 70.3
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 5.8e-89 331.6 249 65.5
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 5.8e-89 331.6 229 69.9
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.3e-88 330.5 220 70.5
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 2.2e-88 329.7 229 69.0
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 8.4e-88 327.8 242 68.2
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 8.4e-88 327.8 230 70.0
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 8.4e-88 327.8 232 67.2
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.4e-87 327.0 231 68.0
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 3.2e-87 325.9 259 62.5
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 9.3e-87 324.3 233 68.7
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 2.1e-86 323.2 226 70.4
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 2.7e-86 322.8 228 68.9
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 2.7e-86 322.8 230 69.6
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 2.8e-83 312.8 259 60.6
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 6.9e-82 308.1 229 66.8
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 3.4e-81 305.8 233 64.4
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 3.4e-81 305.8 189 77.2
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 2.9e-80 302.8 230 64.3
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.9e-80 302.8 221 66.1
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 6.5e-80 301.6 201 70.1
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 8.7e-77 291.2 229 64.2
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 8.7e-77 291.2 230 59.1
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.9e-76 290.0 253 58.9
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 3.3e-76 289.3 221 64.3
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 7.4e-76 288.1 229 62.0
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 1.6e-75 287.0 218 65.1
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 1.1e-74 284.3 183 74.3
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.4e-74 283.9 229 59.0
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 3.4e-73 279.3 221 63.8
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 1.7e-72 276.9 228 58.8
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.7e-72 276.9 171 75.4
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 5.0e-72 275.4 230 61.3
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.1e-71 274.2 183 74.3
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 1.6e-70 270.4 175 77.1
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 6.7e-69 265.0 183 68.9
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 3.3e-68 262.7 233 57.5
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.3e-61 240.0 235 56.6
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 6.7e-61 238.4 164 70.7
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 3.8e-56 222.6 193 59.6
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 2.1e-54 216.9 227 50.7
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 3.5e-49 199.5 265 41.5
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 3.7e-43 179.5 260 39.6
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 6.3e-43 178.7 126 69.8
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 5.4e-42 175.6 309 37.2
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 7.0e-42 175.3 124 67.7
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 7.0e-42 175.3 225 46.2
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 1.6e-41 174.1 115 70.4
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 4.7e-38 162.5 113 69.9
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 5.2e-37 159.1 122 64.8
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 4.9e-35 152.5 125 68.8
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.9e-31 140.6 116 60.3
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 8.9e-29 131.7 194 38.7
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 7.0e-26 122.1 77 76.6
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 3.9e-24 116.3 78 70.5
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 9.5e-23 111.7 71 71.8
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 6.2e-22 109.0 81 65.4
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 3.1e-21 106.7 56 89.3
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 8.1e-14 82.0 77 55.8
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 1.7e-11 74.3 76 50.0


User provided reference genes

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