Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 9.2e-133 476.9 237 100.0
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.5e-106 389.8 239 87.0
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 9.6e-106 387.1 236 85.2
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 1.8e-83 313.2 243 70.8
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.8e-83 313.2 237 73.0
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 3.3e-82 308.9 245 71.4
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 3.3e-82 308.9 245 71.4
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 4.4e-82 308.5 244 72.5
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 7.0e-80 301.2 238 70.2
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.3e-78 297.0 240 72.9
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.3e-78 297.0 240 72.9
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.2e-76 290.4 230 70.9
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.0e-75 287.3 230 71.7
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.8e-75 286.6 231 71.4
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.8e-72 276.6 237 67.9
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 2.6e-66 256.1 244 57.8
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 1.5e-58 230.3 248 56.5
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 8.9e-43 177.9 241 46.9
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 1.2e-42 177.6 244 45.9
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.0e-42 176.8 241 46.5
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 2.0e-42 176.8 241 46.5
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 1.9e-40 170.2 241 45.6
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 2.4e-40 169.9 234 45.3
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 3.2e-40 169.5 234 44.4
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 7.0e-40 168.3 246 43.1
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 2.0e-39 166.8 233 42.9
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 7.8e-39 164.9 237 43.5
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 3.9e-38 162.5 239 43.9
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 8.6e-38 161.4 244 44.7
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.1e-37 161.0 245 42.9
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.1e-37 161.0 239 43.9
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 2.5e-37 159.8 236 44.5
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 9.5e-37 157.9 268 42.9
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.2e-36 157.5 270 40.7
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.6e-36 156.0 251 39.8
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 6.2e-36 155.2 251 39.4
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 6.2e-36 155.2 226 42.0
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 8.0e-36 154.8 146 56.2
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 8.0e-36 154.8 258 41.9
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.4e-35 154.1 267 41.2
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 3.1e-35 152.9 258 42.6
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 3.1e-35 152.9 258 40.7
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 1.2e-34 151.0 249 41.4
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 2.0e-34 150.2 241 41.5
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 2.0e-34 150.2 229 41.0
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.6e-34 149.8 257 41.6
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 3.4e-34 149.4 251 41.8
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 4.4e-34 149.1 237 39.2
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 5.8e-34 148.7 238 41.2
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.5e-34 148.3 247 38.9
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 7.5e-34 148.3 238 43.3
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 9.8e-34 147.9 279 38.0
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.3e-33 147.5 239 41.4
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.3e-33 147.5 240 40.8
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.7e-33 147.1 232 38.8
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 1.7e-33 147.1 250 38.4
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 2.9e-33 146.4 263 38.4
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.4e-33 145.2 263 39.5
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 6.4e-33 145.2 249 40.6
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 6.4e-33 145.2 146 52.7
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 1.1e-32 144.4 238 40.3
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.1e-32 144.4 240 39.2
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.4e-32 144.1 241 39.0
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 3.2e-32 142.9 146 52.7
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 3.2e-32 142.9 251 38.2
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 4.1e-32 142.5 237 39.7
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 4.1e-32 142.5 221 43.0
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 5.4e-32 142.1 172 46.5
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 7.1e-32 141.7 232 38.4
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 1.6e-31 140.6 288 37.5
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.6e-31 140.6 234 38.0
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 2.7e-31 139.8 249 35.7
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 3.5e-31 139.4 267 40.8
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.6e-31 139.0 129 51.2
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 6.0e-31 138.7 228 40.8
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.0e-30 137.9 182 42.9
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.0e-30 137.9 288 38.2
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.3e-30 137.5 295 36.3
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.7e-30 137.1 263 35.7
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 3.0e-30 136.3 275 34.5
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 3.9e-30 136.0 300 35.0
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 3.9e-30 136.0 176 43.2
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.6e-30 135.2 182 42.3
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 6.6e-30 135.2 133 51.9
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 6.6e-30 135.2 146 51.4
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.1e-29 134.4 145 49.0
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.9e-29 133.7 285 38.2
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.5e-29 133.3 253 36.4
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.5e-29 133.3 233 41.6
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 3.3e-29 132.9 145 47.6
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 7.3e-29 131.7 149 48.3
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 9.5e-29 131.3 141 48.9
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 9.5e-29 131.3 228 41.7
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 9.5e-29 131.3 270 37.0
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 1.2e-28 131.0 238 38.2
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 1.2e-28 131.0 127 50.4
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.6e-28 130.6 231 38.1
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.6e-28 130.6 122 54.1
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 2.8e-28 129.8 280 35.4
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 3.6e-28 129.4 173 44.5
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 8.1e-28 128.3 173 43.9
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 8.1e-28 128.3 124 54.0
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 3.1e-27 126.3 169 43.2
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 4.0e-27 125.9 224 36.6
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 4.0e-27 125.9 218 36.2
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 5.2e-27 125.6 218 35.3
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 6.8e-27 125.2 165 44.2
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.2e-26 124.4 251 33.5
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 1.2e-26 124.4 155 44.5
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.5e-26 124.0 130 50.0
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.0e-26 123.6 204 36.8
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 2.6e-26 123.2 112 55.4
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 4.4e-26 122.5 161 44.1
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 5.8e-26 122.1 218 36.2
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.2e-25 120.2 168 47.6
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 2.9e-25 119.8 226 35.4
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 2.9e-25 119.8 112 53.6
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 2.9e-25 119.8 240 35.4
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 3.7e-25 119.4 161 42.2
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 3.7e-25 119.4 251 35.1
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 3.7e-25 119.4 248 33.9
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 4.9e-25 119.0 282 34.0
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.4e-25 118.6 168 47.0
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 1.4e-24 117.5 158 40.5
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 4.1e-24 115.9 110 49.1
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 4.1e-24 115.9 237 37.6
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 5.4e-24 115.5 258 38.0
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 2.1e-23 113.6 252 32.9
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 3.5e-23 112.8 266 34.2
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.0e-22 111.3 225 32.4
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-22 110.9 134 45.5
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.7e-22 110.5 158 39.2
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 3.9e-22 109.4 215 35.3
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 1.5e-21 107.5 241 36.1
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 4.3e-21 105.9 199 35.7
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.8e-20 103.2 231 35.5
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 3.6e-20 102.8 136 41.9
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 2.4e-19 100.1 209 34.9
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 2.0e-18 97.1 184 35.9
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.4e-18 96.3 175 40.0
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 4.4e-18 95.9 117 44.4
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-16 91.3 114 43.0
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.5e-15 86.3 82 50.0
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.0e-14 84.7 230 30.9
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 1.3e-14 84.3 233 30.5
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.9e-14 82.8 233 34.3
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 8.7e-14 81.6 75 61.3
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 8.7e-14 81.6 73 60.3
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 1.1e-13 81.3 211 34.1
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.5e-13 80.9 124 40.3
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 2.1e-12 77.0 106 44.3
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 9.9e-10 68.2 149 34.2
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.9e-08 63.9 63 46.0
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 2.7e-07 60.1 94 45.7
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.7e-07 60.1 61 45.9
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 4.6e-07 59.3 89 39.3
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 3.0e-06 56.6 56 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 3.9e-06 56.2 155 30.3


User provided reference genes

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