Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G47860 Arabidopsis lyrata HOM05D003030 ORTHO05D003610 4.1e-27 124.0 64 100.0
AT3G51800 Arabidopsis thaliana HOM05D003030 ORTHO05D003610 1.1e-19 99.4 71 78.9
Carub.0005s1815 Capsella rubella HOM05D003030 ORTHO05D003610 1.4e-19 99.0 72 80.6
AL5G32260 Arabidopsis lyrata HOM05D003030 ORTHO05D003610 9.2e-19 96.3 72 76.4
BcaC09g50104 Brassica carinata HOM05D003030 ORTHO05D003610 3.9e-17 90.9 72 73.6
A01p23250 Brassica napus HOM05D003030 ORTHO05D006031 3.9e-17 90.9 72 73.6
C01p28890 Brassica napus HOM05D003030 ORTHO05D006031 3.9e-17 90.9 72 73.6
BolC1t02823H Brassica oleracea HOM05D003030 ORTHO05D003610 3.9e-17 90.9 72 73.6
BraA01t02237Z Brassica rapa HOM05D003030 ORTHO05D003610 3.9e-17 90.9 72 73.6
Thhalv10010435m.g Eutrema salsugineum HOM05D003030 ORTHO05D003610 3.9e-17 90.9 72 73.6
CARHR161430 Cardamine hirsuta HOM05D003030 ORTHO05D003610 1.2e-15 85.9 73 69.9
Sp5g10470 Schrenkiella parvula HOM05D003030 ORTHO05D003610 1.2e-15 85.9 71 70.4
Aa31LG10G9130 Aethionema arabicum HOM05D003030 ORTHO05D003610 4.7e-15 84.0 77 68.8
BcaB01g00415 Brassica carinata HOM05D003030 ORTHO05D003610 1.8e-14 82.0 72 70.8
A03p48520 Brassica napus HOM05D003030 ORTHO05D003610 1.8e-14 82.0 67 70.1
BraA03t13957Z Brassica rapa HOM05D003030 ORTHO05D003610 1.8e-14 82.0 67 70.1
BcaNung00370 Brassica carinata HOM05D003030 ORTHO05D003610 2.3e-14 81.6 73 69.9
BcaB01g00475 Brassica carinata HOM05D003030 ORTHO05D003610 4.0e-14 80.9 72 69.4
BcaC06g33008 Brassica carinata HOM05D003030 ORTHO05D003610 4.0e-14 80.9 70 70.0
Ciclev10011909m.g Citrus clementina HOM05D003030 ORTHO05D003610 6.8e-14 80.1 69 66.7
BcaC06g33351 Brassica carinata HOM05D003030 ORTHO05D003610 8.9e-14 79.7 70 68.6
C07p46610 Brassica napus HOM05D003030 ORTHO05D003610 8.9e-14 79.7 70 68.6
BolC7t45176H Brassica oleracea HOM05D003030 ORTHO05D003610 8.9e-14 79.7 70 68.6
A09p44970 Brassica napus HOM05D004241 ORTHO05D006031 1.5e-13 79.0 73 68.5
BraA09t39956Z Brassica rapa HOM05D003030 ORTHO05D003610 1.5e-13 79.0 73 68.5
Sabra06G0078500 Salix brachista HOM05D003030 ORTHO05D003610 1.5e-13 79.0 73 65.8
C08p27050 Brassica napus HOM05D004241 ORTHO05D006031 2.0e-13 78.6 73 67.1
BolC8t50320H Brassica oleracea HOM05D004241 ORTHO05D006031 2.0e-13 78.6 73 67.1
COL.COLO4_03383 Corchorus olitorius HOM05D003030 ORTHO05D003610 1.3e-12 75.9 72 62.5
Potri.016G119700 Populus trichocarpa HOM05D003030 ORTHO05D003610 1.3e-12 75.9 64 68.8
Cfa017177 Carpinus fangiana HOM05D003030 ORTHO05D003610 1.7e-12 75.5 69 63.8
Potri.006G102200 Populus trichocarpa HOM05D003030 ORTHO05D003610 2.9e-12 74.7 76 64.5
RcHm_v2.0_Chr3g0462561 Rosa chinensis HOM05D003030 ORTHO05D003610 2.9e-12 74.7 70 62.9
Actinidia11570 Actinidia chinensis HOM05D003030 ORTHO05D003610 3.7e-12 74.3 73 64.4
CiPaw.09G211500 Carya illinoinensis HOM05D003030 ORTHO05D003610 3.7e-12 74.3 68 63.2
Dinv16900 Davidia involucrata HOM05D003030 ORTHO05D003610 4.9e-12 73.9 68 63.2
FvH4_6g11120 Fragaria vesca HOM05D003030 ORTHO05D003610 4.9e-12 73.9 70 62.9
FAN02G0092 Fragaria x ananassa HOM05D003030 ORTHO05D003610 4.9e-12 73.9 70 62.9
FAN05G1407 Fragaria x ananassa HOM05D003030 ORTHO05D003610 4.9e-12 73.9 70 62.9
FAN09G4535 Fragaria x ananassa HOM05D003030 ORTHO05D003610 4.9e-12 73.9 70 62.9
FAN14G0463 Fragaria x ananassa HOM05D003030 ORTHO05D003610 4.9e-12 73.9 70 62.9
Manes.09G106700 Manihot esculenta HOM05D003030 ORTHO05D003610 8.3e-12 73.2 74 63.5
GSVIVG01003934001 Vitis vinifera HOM05D003030 ORTHO05D003610 8.3e-12 73.2 68 61.8
Cpa.g.sc120.60 Carica papaya HOM05D003030 ORTHO05D003610 1.1e-11 72.8 68 63.2
Eucgr.K02971 Eucalyptus grandis HOM05D003030 ORTHO05D003610 1.4e-11 72.4 68 61.8
Eucgr.L01140 Eucalyptus grandis HOM05D003030 ORTHO05D003610 1.4e-11 72.4 68 61.8
Glyma.18G203800 Glycine max HOM05D003030 ORTHO05D003610 1.4e-11 72.4 69 59.4
CSS0020092 Camellia sinensis var. sinensis HOM05D003030 ORTHO05D003610 1.9e-11 72.0 68 61.8
CSS0038480 Camellia sinensis var. sinensis HOM05D003030 ORTHO05D003610 1.9e-11 72.0 68 61.8
Thecc.05G012400 Theobroma cacao HOM05D003030 ORTHO05D003610 2.4e-11 71.6 68 60.3
Haze_21028 Corylus avellana HOM05D003030 ORTHO05D003610 3.2e-11 71.2 67 61.2
PSO339G5715 Papaver somniferum HOM05D003030 ORTHO05D003610 3.2e-11 71.2 73 61.6
PSO384G0757 Papaver somniferum HOM05D003030 ORTHO05D003610 3.2e-11 71.2 73 61.6
Atru.chr11.573 Acer truncatum HOM05D003030 ORTHO05D003610 4.1e-11 70.9 69 60.9
Atru.chr8.2276 Acer truncatum HOM05D003030 ORTHO05D003610 4.1e-11 70.9 69 60.9
Glyma.03G055500 Glycine max HOM05D003030 ORTHO05D003610 4.1e-11 70.9 63 63.5
vmacro20298 Vaccinium macrocarpon HOM05D003030 ORTHO05D003610 5.4e-11 70.5 68 60.3
Phvul.008G095900 Phaseolus vulgaris HOM05D003030 ORTHO05D003610 7.0e-11 70.1 69 58.0
VMungo1383G1990 Vigna mungo HOM05D003030 ORTHO05D003610 7.0e-11 70.1 69 58.0
CiPaw.10G158000 Carya illinoinensis HOM05D003030 ORTHO05D003610 9.2e-11 69.7 68 58.8
Rhsim05G0217500 Rhododendron simsii HOM05D003030 ORTHO05D003610 9.2e-11 69.7 68 60.3
Sabra16G0115600 Salix brachista HOM05D003030 ORTHO05D003610 9.2e-11 69.7 69 60.9
TWI74G1204 Tripterygium wilfordii HOM05D003030 ORTHO05D003610 9.2e-11 69.7 69 59.4
ClCG10G022300 Citrullus lanatus HOM05D003030 ORTHO05D003610 1.2e-10 69.3 68 57.4
SalBow5G1849 Salvia bowleyana HOM05D003030 ORTHO05D003610 1.2e-10 69.3 75 58.7
CSS0029522 Camellia sinensis var. sinensis HOM05D003030 ORTHO05D003610 1.6e-10 68.9 68 58.8
PGR004G1298 Punica granatum HOM05D003030 ORTHO05D003610 1.6e-10 68.9 71 62.0
Sed0026995 Sechium edule HOM05D003030 ORTHO05D003610 1.6e-10 68.9 68 58.8
arahy.Tifrunner.gnm1.ann1.MTX888 Arachis hypogaea HOM05D003030 ORTHO05D003610 2.0e-10 68.6 72 59.7
arahy.Tifrunner.gnm1.ann1.S2MXQV Arachis hypogaea HOM05D003030 ORTHO05D003610 2.0e-10 68.6 72 59.7
ECA236G1375 Erigeron canadensis HOM05D003030 ORTHO05D003610 2.0e-10 68.6 65 60.0
VMungo1383G1106 Vigna mungo HOM05D003030 ORTHO05D003610 2.0e-10 68.6 69 56.5
Nn2g10902 Nelumbo nucifera HOM05D003030 ORTHO05D003610 2.7e-10 68.2 69 62.3
Phvul.008G095800 Phaseolus vulgaris HOM05D003030 ORTHO05D003610 2.7e-10 68.2 69 56.5
Eucgr.L01138 Eucalyptus grandis HOM05D003030 ORTHO05D003610 3.5e-10 67.8 68 58.8
Glyma.07G152700 Glycine max HOM05D003030 ORTHO05D003610 3.5e-10 67.8 69 56.5
QL07p035029 Quercus lobata HOM05D003030 ORTHO05D003610 3.5e-10 67.8 67 58.2
Sed0021817 Sechium edule HOM05D003030 ORTHO05D003610 3.5e-10 67.8 65 60.0
Ca_04021_v3 Cicer arietinum L. HOM05D003030 ORTHO05D003610 4.6e-10 67.4 67 61.2
PGR004G1748 Punica granatum HOM05D003030 ORTHO05D003610 4.6e-10 67.4 68 61.8
MSTRG.18993 Avicennia marina HOM05D003030 ORTHO05D003610 6.0e-10 67.0 71 56.3
MSTRG.5563 Avicennia marina HOM05D003030 ORTHO05D003610 6.0e-10 67.0 67 61.2
Hund10981 Selenicereus undatus HOM05D003030 ORTHO05D003610 6.0e-10 67.0 68 58.8
Dinv09637 Davidia involucrata HOM05D003030 ORTHO05D003610 7.8e-10 66.6 69 59.4
Lj2C71G10 Lonicera japonica HOM05D003030 ORTHO05D003610 7.8e-10 66.6 67 58.2
Nn2g13177 Nelumbo nucifera HOM05D003030 ORTHO05D003610 7.8e-10 66.6 69 58.0
THA.LOC104806611 Tarenaya hassleriana HOM05D003030 ORTHO05D003610 7.8e-10 66.6 77 62.3
GSVIVG01024707001 Vitis vinifera HOM05D003030 ORTHO05D003610 7.8e-10 66.6 68 63.2
CANSAT35G1667 Cannabis sativa HOM05D003030 ORTHO05D003610 1.0e-09 66.2 71 56.3
Migut.L02031 Erythranthe guttata HOM05D003030 ORTHO05D003610 1.0e-09 66.2 72 55.6
Gohir.D01G216400 Gossypium hirsutum HOM05D003030 ORTHO05D003610 1.0e-09 66.2 68 58.8
Gorai.002G262700 Gossypium raimondii HOM05D003030 ORTHO05D003610 1.0e-09 66.2 68 58.8
Ah.12g058860 Amaranthus hybridus HOM05D003030 ORTHO05D003610 1.3e-09 65.9 70 58.6
Cfa011724 Carpinus fangiana HOM05D003030 ORTHO05D003610 1.3e-09 65.9 70 58.6
Glyma.01G119400 Glycine max HOM05D003030 ORTHO05D003610 1.3e-09 65.9 63 60.3
CSS0037459 Camellia sinensis var. sinensis HOM05D003030 ORTHO05D003610 1.7e-09 65.5 78 51.3
CDE12G0536 Ceratophyllum demersum HOM05D003030 ORTHO05D003610 1.7e-09 65.5 70 58.6
Duzib093G1068 Durio zibethinus HOM05D003030 ORTHO05D003610 2.3e-09 65.1 63 60.3
Duzib128G0937 Durio zibethinus HOM05D003030 ORTHO05D003610 2.3e-09 65.1 74 56.8
Medtr7g069390 Medicago truncatula HOM05D003030 ORTHO05D003610 2.3e-09 65.1 69 53.6
MELO3C026003.2 Cucumis melo HOM05D003030 ORTHO05D003610 3.0e-09 64.7 65 60.0
Hma1.2p1_0362F.1_g136510 Hydrangea macrophylla HOM05D003030 ORTHO05D003610 3.0e-09 64.7 66 59.1
Lj3g0005923 Lotus japonicus HOM05D003030 ORTHO05D003610 3.0e-09 64.7 63 60.3
Peaxi162Scf00540g00127 Petunia axillaris HOM05D003030 ORTHO05D003610 3.0e-09 64.7 65 60.0
Lj3C949G7 Lonicera japonica HOM05D003030 ORTHO05D003610 3.9e-09 64.3 65 60.0
CsaV3_3G033580 Cucumis sativus L. HOM05D003030 ORTHO05D003610 5.0e-09 63.9 65 53.8
Gohir.D01G216210 Gossypium hirsutum HOM05D003030 ORTHO05D003610 5.0e-09 63.9 68 57.4
Lj3g0018440 Lotus japonicus HOM05D003030 ORTHO05D003610 5.0e-09 63.9 63 60.3
DCAR_018684 Daucus carota HOM05D003030 ORTHO05D003610 6.6e-09 63.5 65 60.0
Hma1.2p1_0479F.1_g161450 Hydrangea macrophylla HOM05D003030 ORTHO05D003610 6.6e-09 63.5 75 54.7
AUR62030474 Chenopodium quinoa HOM05D003030 ORTHO05D003610 8.6e-09 63.2 73 54.8
MD00G1062200 Malus domestica HOM05D003030 ORTHO05D003610 8.6e-09 63.2 70 54.3
AUR62010443 Chenopodium quinoa HOM05D003030 ORTHO05D003610 1.5e-08 62.4 73 56.2
Ca_07662_v3 Cicer arietinum L. HOM05D003030 ORTHO05D003610 1.5e-08 62.4 69 55.1
Duzib106G1809 Durio zibethinus HOM05D003030 ORTHO05D003610 1.5e-08 62.4 70 54.3
Nitab4.5_0000967g0130 Nicotiana tabacum HOM05D003030 ORTHO05D003610 1.5e-08 62.4 72 55.6
TPR.G9215 Trifolium pratense HOM05D003030 ORTHO05D003610 1.5e-08 62.4 65 56.9
TAR636G2360 Trochodendron aralioides HOM05D003030 ORTHO05D003610 1.5e-08 62.4 69 58.0
CAN.G1095.5 Capsicum annuum HOM05D003030 ORTHO05D003610 1.9e-08 62.0 65 58.5
ECA247G1587 Erigeron canadensis HOM05D001155 ORTHO05D001080 1.9e-08 62.0 68 58.8
EL10Ac5g12534 Beta vulgaris HOM05D003030 ORTHO05D003610 2.5e-08 61.6 68 57.4
Cc01_g14450 Coffea canephora HOM05D003030 ORTHO05D003610 3.3e-08 61.2 69 55.1
MBI15_g33260_MAGBIO Magnolia biondii HOM05D003030 ORTHO05D003610 3.3e-08 61.2 71 60.6
PGSC0003DMG400030365 Solanum tuberosum HOM05D003030 ORTHO05D003610 3.3e-08 61.2 66 59.1
SGA_v2.0_scaffold110G31204 Striga asiatica HOM05D003030 ORTHO05D003610 3.3e-08 61.2 68 52.9
HanXRQChr06g0182241 Helianthus annuus HOM05D003030 ORTHO05D003610 4.3e-08 60.8 61 57.4
SalBow4G0748 Salvia bowleyana HOM05D003030 ORTHO05D003610 4.3e-08 60.8 68 54.4
Lsat_1_v5_gn_8_101001 Lactuca sativa HOM05D003030 ORTHO05D003610 5.6e-08 60.5 65 56.9
Lsat_1_v5_gn_9_35001 Lactuca sativa HOM05D003030 ORTHO05D003610 7.3e-08 60.1 72 54.2
Lalb_Chr03g0043361 Lupinus albus HOM05D003030 ORTHO05D003610 7.3e-08 60.1 70 51.4
Oeu063394.1 Olea europaea HOM05D003030 ORTHO05D003610 7.3e-08 60.1 64 57.8
Solyc06g082090.4 Solanum lycopersicum HOM05D003030 ORTHO05D003610 7.3e-08 60.1 66 57.6
Actinidia05355 Actinidia chinensis HOM05D003030 ORTHO05D003610 9.5e-08 59.7 39 74.4
Aqoxy2G00837 Aquilegia oxysepala HOM05D003030 ORTHO05D003610 9.5e-08 59.7 66 53.0
CDE06G0106 Ceratophyllum demersum HOM05D003030 ORTHO05D003610 9.5e-08 59.7 39 76.9
Haze_12926 Corylus avellana HOM05D003030 ORTHO05D034886 9.5e-08 59.7 64 53.1
Gohir.A09G166400 Gossypium hirsutum HOM05D003030 ORTHO05D003610 9.5e-08 59.7 48 68.8
Gorai.006G183700 Gossypium raimondii HOM05D003030 ORTHO05D003610 9.5e-08 59.7 65 58.5
Sopen06g033480 Solanum pennellii HOM05D003030 ORTHO05D003610 9.5e-08 59.7 66 57.6
TPR.G35448 Trifolium pratense HOM05D003030 ORTHO05D003610 9.5e-08 59.7 65 55.4
Psat3g126040 Pisum sativum HOM05D003030 ORTHO05D003610 1.2e-07 59.3 69 50.7
Sc07g0006730 Simmondsia chinensis HOM05D003030 ORTHO05D003610 1.2e-07 59.3 48 66.7
DCAR_028864 Daucus carota HOM05D003030 ORTHO05D003610 1.6e-07 58.9 71 56.3
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 1.6e-07 58.9 69 55.1
PSO801G0079 Papaver somniferum HOM05D003030 ORTHO05D003610 2.1e-07 58.5 71 50.7
Hund14884 Selenicereus undatus HOM05D003030 ORTHO05D003610 2.1e-07 58.5 68 55.9
ClCG04G006900 Citrullus lanatus HOM05D003030 ORTHO05D003610 2.8e-07 58.2 69 50.7
Lalb_Chr03g0043351 Lupinus albus HOM05D003030 ORTHO05D003610 2.8e-07 58.2 67 52.2
Medtr2g078290 Medicago truncatula HOM05D003030 ORTHO05D003610 3.6e-07 57.8 66 57.6
SGA_v2.0_scaffold75G25030 Striga asiatica HOM05D003030 ORTHO05D003610 3.6e-07 57.8 69 49.3
arahy.Tifrunner.gnm1.ann1.4KM924 Arachis hypogaea HOM05D003030 ORTHO05D003610 4.7e-07 57.4 58 58.6
arahy.Tifrunner.gnm1.ann1.L1LL6X Arachis hypogaea HOM05D003030 ORTHO05D003610 4.7e-07 57.4 58 58.6
Gohir.D09G162000 Gossypium hirsutum HOM05D003030 ORTHO05D003610 4.7e-07 57.4 48 64.6
Oeu042664.1 Olea europaea HOM05D003030 ORTHO05D003610 4.7e-07 57.4 52 61.5
PSO339G0128 Papaver somniferum HOM05D003030 ORTHO05D003610 4.7e-07 57.4 71 53.5
Solyc06g007200.4 Solanum lycopersicum HOM05D003030 ORTHO05D003610 4.7e-07 57.4 69 56.5
Ah.02g115580 Amaranthus hybridus HOM05D003030 ORTHO05D003610 6.2e-07 57.0 72 47.2
THA.LOC104823376 Tarenaya hassleriana HOM05D003030 ORTHO05D003610 6.2e-07 57.0 49 69.4
Sopen06g002180 Solanum pennellii HOM05D003030 ORTHO05D003610 8.1e-07 56.6 70 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1172 Anthoceros agrestis HOM05D003030 ORTHO05D003610 1.1e-06 56.2 64 54.7
Mapoly0151s0030 Marchantia polymorpha HOM05D003030 ORTHO05D003610 1.1e-06 56.2 73 56.2
Nitab4.5_0001048g0010 Nicotiana tabacum HOM05D003030 ORTHO05D003610 1.1e-06 56.2 65 55.4
TWI53G2107 Tripterygium wilfordii HOM05D003030 ORTHO05D003610 1.1e-06 56.2 68 51.5
unitig_8.g4458 Utricularia gibba HOM05D003030 ORTHO05D003610 1.1e-06 56.2 68 51.5
Migut.J00135 Erythranthe guttata HOM05D003030 ORTHO05D003610 1.4e-06 55.8 39 71.8
Nitab4.5_0001806g0010 Nicotiana tabacum HOM05D003030 ORTHO05D003610 1.4e-06 55.8 65 53.8
PGSC0003DMG400020542 Solanum tuberosum HOM05D003030 ORTHO05D003610 1.4e-06 55.8 70 55.7
Oeu038750.2 Olea europaea HOM05D003030 ORTHO05D003610 1.8e-06 55.5 50 62.0
HPP92_018102 Vanilla planifolia HOM05D003030 ORTHO05D003610 1.8e-06 55.5 66 53.0
Lalb_Chr01g0023171 Lupinus albus HOM05D003030 ORTHO05D003610 3.1e-06 54.7 48 62.5
unitig_578.g15902 Utricularia gibba HOM05D003030 ORTHO05D003610 3.1e-06 54.7 39 71.8
HanXRQChr12g0383151 Helianthus annuus HOM05D003030 ORTHO05D003610 4.0e-06 54.3 65 55.4
Lalb_Chr19g0124391 Lupinus albus HOM05D003030 ORTHO05D003610 6.8e-06 53.5 48 60.4
SMO358G0659 Selaginella moellendorffii HOM05D003030 ORTHO05D003610 6.8e-06 53.5 48 56.2
MD12G1172200 Malus domestica HOM05D003030 ORTHO05D003610 8.9e-06 53.1 71 47.9
Nitab4.5_0008458g0040 Nicotiana tabacum HOM05D003030 ORTHO05D003610 8.9e-06 53.1 49 65.3


User provided reference genes

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