Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 9.0e-138 493.8 292 100.0
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 8.5e-120 434.1 292 90.8
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 4.8e-107 391.7 295 80.0
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 5.2e-93 345.1 296 70.3
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 5.2e-93 345.1 296 70.3
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 1.8e-90 336.7 296 69.3
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 1.0e-88 330.9 299 72.9
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.9e-87 326.6 298 67.8
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 9.5e-87 324.3 298 67.1
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 7.7e-81 304.7 296 62.8
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 2.0e-65 253.4 222 74.8
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 4.7e-46 189.1 336 46.4
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 8.7e-40 168.3 172 62.2
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 4.3e-39 166.0 296 44.9
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 8.1e-38 161.8 301 43.9
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 1.8e-37 160.6 296 44.3
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 2.4e-37 160.2 305 43.3
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 5.8e-36 155.6 293 41.6
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 6.4e-35 152.1 291 48.1
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 1.9e-34 150.6 277 43.3
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.6e-33 147.5 279 42.7
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 7.9e-33 145.2 176 52.3
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 3.9e-32 142.9 300 44.3
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.5e-31 141.0 180 50.6
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 1.9e-31 140.6 177 50.8
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 5.6e-31 139.0 176 55.1
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 7.4e-31 138.7 188 53.2
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 7.4e-31 138.7 262 40.8
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 7.4e-31 138.7 262 40.8
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.6e-30 137.5 171 50.3
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.8e-30 136.7 262 40.5
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 2.4e-29 133.7 185 48.1
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 3.1e-29 133.3 187 47.6
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 4.0e-29 132.9 176 57.4
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 4.0e-29 132.9 169 49.7
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 4.0e-29 132.9 169 49.7
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 5.3e-29 132.5 303 38.3
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 5.3e-29 132.5 171 52.6
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 6.9e-29 132.1 185 55.7
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 9.0e-29 131.7 295 40.0
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 9.0e-29 131.7 176 47.7
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.5e-28 131.0 180 50.6
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.5e-28 131.0 180 50.6
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 2.0e-28 130.6 179 49.7
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 2.0e-28 130.6 180 47.8
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 2.0e-28 130.6 174 58.6
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 2.6e-28 130.2 195 47.2
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 3.4e-28 129.8 177 56.5
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 3.4e-28 129.8 174 51.7
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.4e-28 129.8 179 50.8
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 4.5e-28 129.4 180 47.2
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 8.4e-27 125.2 174 50.0
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 8.4e-27 125.2 163 51.5
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.4e-26 124.4 168 50.6
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.9e-26 124.0 173 48.6
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 2.4e-26 123.6 172 48.8
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 4.2e-26 122.9 176 48.3
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 5.5e-26 122.5 180 50.6
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 7.1e-26 122.1 177 54.2
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 7.1e-26 122.1 177 54.2
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 7.1e-26 122.1 189 46.0
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.2e-25 121.3 248 38.3
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.2e-25 121.3 248 38.3
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.2e-25 121.3 177 46.3
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.2e-25 121.3 176 49.4
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 2.7e-25 120.2 180 47.8
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 2.7e-25 120.2 185 45.9
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 6.0e-25 119.0 176 46.6
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.3e-24 117.1 167 46.1
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 3.0e-24 116.7 179 50.8
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.9e-24 116.3 172 45.3
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 6.7e-24 115.5 190 44.7
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.1e-23 114.8 171 46.2
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 1.9e-23 114.0 197 46.2
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 9.6e-23 111.7 179 50.3
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 1.3e-22 111.3 174 44.3
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 1.6e-22 110.9 192 41.7
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 1.6e-22 110.9 184 46.2
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 1.6e-22 110.9 183 42.6
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 2.1e-22 110.5 178 53.4
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 2.1e-22 110.5 184 44.0
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 2.8e-22 110.2 182 42.3
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.7e-22 109.8 178 46.1
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 6.2e-22 109.0 179 44.1
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 8.2e-22 108.6 180 50.0
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.1e-21 108.2 191 49.2
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 1.4e-21 107.8 169 43.8
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.0e-21 106.3 178 44.4
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.0e-21 106.3 178 44.4
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 3.4e-20 103.2 168 42.9
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.4e-20 103.2 178 40.4
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 3.4e-20 103.2 176 51.7
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 4.5e-20 102.8 168 48.2
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 5.8e-20 102.4 180 43.9
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 7.6e-20 102.1 181 47.0
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 1.0e-19 101.7 184 45.1
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.0e-19 101.7 185 45.9
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.0e-19 101.7 148 50.0
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.0e-19 101.7 162 44.4
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.7e-19 100.9 184 42.4
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 2.2e-19 100.5 168 42.9
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.2e-19 100.5 183 38.8
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 2.2e-19 100.5 189 42.9
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 2.2e-19 100.5 184 43.5
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.9e-19 100.1 186 44.6
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 4.9e-19 99.4 182 42.9
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 1.1e-18 98.2 179 42.5
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 5.5e-18 95.9 175 40.0
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 1.2e-17 94.7 179 38.5
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 1.6e-17 94.4 183 41.0
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 6.0e-17 92.4 165 39.4
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 7.9e-17 92.0 179 38.5
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 7.9e-17 92.0 174 40.2
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.0e-16 91.7 170 40.6
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 5.7e-15 85.9 174 37.4
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 1.3e-14 84.7 168 40.5
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 3.1e-13 80.1 161 39.1
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.0e-11 75.1 124 37.9
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 3.8e-11 73.2 150 40.7
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 5.0e-11 72.8 188 34.0
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.5e-10 69.3 101 49.5
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 5.5e-10 69.3 101 49.5
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 7.2e-10 68.9 182 38.5
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.6e-09 67.8 101 49.5
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 2.7e-09 67.0 106 50.0
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 2.7e-09 67.0 168 32.7
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 3.6e-09 66.6 90 45.6
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 7.9e-09 65.5 98 44.9
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 7.9e-09 65.5 98 44.9
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 7.9e-09 65.5 98 44.9
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.3e-08 63.9 107 42.1
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 1.5e-07 61.2 113 39.8
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.5e-07 61.2 103 46.6
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.5e-07 61.2 103 46.6
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 2.5e-07 60.5 103 40.8
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 3.3e-07 60.1 97 46.4
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.3e-07 59.7 47 66.0
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 1.3e-06 58.2 42 59.5
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 1.3e-06 58.2 58 51.7
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 2.8e-06 57.0 58 53.4
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 6.3e-06 55.8 178 29.8
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 6.3e-06 55.8 38 68.4


User provided reference genes

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