Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.5e-269 932.2 452 100.0
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.0e-260 902.9 452 96.7
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 8.7e-257 889.8 452 94.9
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 2.2e-247 858.6 455 91.9
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.0e-244 849.7 454 91.0
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 3.3e-240 834.7 459 88.0
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 3.2e-235 818.1 456 87.5
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 3.6e-234 814.7 458 87.1
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.0e-233 813.1 458 87.1
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.0e-233 813.1 458 87.1
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.8e-233 812.4 458 87.1
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 3.9e-233 811.2 458 86.7
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.2e-226 789.6 458 84.9
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.5e-216 756.1 470 80.2
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 3.1e-214 748.4 469 78.5
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.0e-209 733.4 486 77.0
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 2.5e-203 712.2 403 86.4
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 2.3e-196 689.1 421 80.3
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.8e-194 682.2 458 70.5
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 3.1e-193 678.7 454 70.3
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 2.2e-191 672.5 467 68.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.4e-190 669.8 454 68.9
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 7.0e-190 667.5 458 68.6
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 3.5e-189 665.2 461 67.9
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 4.6e-189 664.8 450 69.3
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 8.6e-188 660.6 454 68.7
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 8.6e-188 660.6 458 67.7
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.1e-187 660.2 457 67.2
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.9e-187 659.4 461 67.9
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.9e-187 659.4 457 68.3
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.5e-187 659.1 460 68.5
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 5.6e-187 657.9 456 68.0
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 9.5e-187 657.1 454 67.2
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 6.2e-186 654.4 455 68.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.1e-185 653.7 458 65.9
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.1e-185 653.7 458 65.9
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.4e-185 653.3 454 66.7
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.4e-185 653.3 458 67.2
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.8e-185 652.9 446 68.4
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 5.2e-185 651.4 454 68.1
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 8.9e-185 650.6 458 66.8
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 1.5e-184 649.8 458 67.2
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.4e-182 643.3 478 72.2
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 1.9e-182 642.9 453 66.0
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 3.2e-182 642.1 450 66.4
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 9.2e-182 640.6 459 64.7
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 9.2e-182 640.6 456 67.3
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.6e-181 639.8 462 64.7
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.6e-181 639.8 446 67.3
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.7e-181 639.0 459 65.1
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 6.0e-181 637.9 458 65.3
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 6.0e-181 637.9 459 64.7
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 3.0e-180 635.6 430 68.8
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 8.6e-180 634.0 456 66.0
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.1e-179 633.6 459 64.3
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.9e-179 632.9 434 68.2
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 3.3e-179 632.1 458 66.8
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 5.6e-179 631.3 433 68.4
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 5.6e-179 631.3 433 68.4
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 4.7e-178 628.2 433 67.0
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 6.2e-178 627.9 433 68.4
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 6.2e-178 627.9 430 67.9
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 8.9e-177 624.0 449 65.7
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.2e-176 623.6 459 64.3
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.2e-176 623.6 456 65.4
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.6e-176 622.5 459 64.1
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 3.4e-176 622.1 459 64.1
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.3e-175 620.2 456 64.5
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.9e-175 619.0 458 64.2
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.4e-174 616.7 459 63.6
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.9e-174 616.3 445 65.6
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.4e-174 615.9 439 66.1
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 3.2e-174 615.5 441 66.4
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.2e-173 613.6 438 66.9
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.6e-173 613.2 457 63.9
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 6.6e-172 607.8 439 67.0
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 6.6e-172 607.8 453 64.0
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 8.7e-172 607.4 459 63.2
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 3.3e-171 605.5 434 66.1
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 5.6e-171 604.7 454 65.4
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 7.3e-171 604.4 458 63.8
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 9.6e-171 604.0 474 61.4
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.1e-170 602.8 465 63.2
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.8e-170 602.4 464 63.6
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 4.7e-170 601.7 449 65.3
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.7e-170 601.7 422 68.0
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 4.7e-170 601.7 453 63.4
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.1e-169 599.0 466 62.9
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.3e-167 593.6 442 64.5
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.2e-167 592.8 443 64.8
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 2.9e-167 592.4 428 64.5
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 4.2e-166 588.6 453 62.7
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 6.0e-165 584.7 461 62.9
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 1.9e-163 579.7 462 63.4
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.6e-162 576.6 407 67.6
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 3.6e-162 575.5 486 60.1
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 5.3e-161 571.6 394 67.0
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 5.3e-161 571.6 495 58.8
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.4e-160 568.9 455 62.2
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 7.6e-160 567.8 468 60.7
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 2.9e-159 565.8 450 59.6
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.9e-159 565.8 457 60.2
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 4.9e-159 565.1 462 59.7
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.0e-156 555.8 451 59.6
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 2.2e-151 539.7 395 65.1
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 5.5e-150 535.0 364 67.6
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 6.7e-148 528.1 454 55.3
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.6e-146 523.5 381 68.5
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.1e-145 520.8 384 64.1
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.8e-145 520.0 442 54.8
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 8.4e-143 511.1 437 58.6
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.9e-142 510.0 474 56.1
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.1e-141 506.5 436 56.2
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 6.0e-141 505.0 428 55.1
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.0e-140 504.2 539 50.1
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.4e-137 493.8 421 59.1
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 6.5e-127 458.4 351 61.8
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 8.8e-124 448.0 433 52.7
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.7e-120 434.9 347 59.7
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.8e-119 432.6 347 59.1
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 4.1e-113 412.5 291 68.0
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.5e-110 404.1 464 46.8
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 2.1e-109 400.2 291 64.9
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.6e-104 384.0 463 48.4
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.5e-102 375.6 413 50.4
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 2.1e-101 373.6 374 48.9
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 2.2e-98 363.6 266 63.9
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 4.5e-96 355.9 330 55.2
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 2.3e-95 353.6 436 44.0
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.3e-87 327.0 367 43.9
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 2.0e-80 303.9 210 66.7
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 3.0e-71 273.5 280 52.5
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.6e-70 269.2 257 62.3
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.2e-69 268.1 215 61.9
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.6e-69 267.7 255 62.0
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 2.8e-61 240.4 175 65.7
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.2e-57 226.5 255 56.1
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 4.4e-51 206.5 118 76.3
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 1.1e-49 201.8 181 57.5
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.2e-48 198.4 203 48.3
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.5e-46 191.4 213 53.1
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.4e-36 158.3 157 52.9
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.3e-34 151.8 110 66.4
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.9e-34 149.8 85 85.9
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 7.9e-32 142.5 99 66.7
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 1.0e-31 142.1 202 40.1
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 6.7e-31 139.4 234 36.3
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 8.7e-31 139.0 107 59.8
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 4.5e-19 100.1 161 37.9
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 2.9e-18 97.4 60 73.3
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 8.5e-18 95.9 91 50.5
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 2.7e-16 90.9 70 60.0
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.6e-08 65.1 42 64.3
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.7e-08 64.3 83 45.8
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 7.9e-08 62.8 33 78.8
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.8e-07 59.3 79 43.0


User provided reference genes

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