Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.4e-93 345.5 179 100.0
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.1e-77 293.5 187 83.4
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.8e-72 276.2 180 82.8
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 9.9e-71 270.4 193 78.8
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.7e-70 269.6 191 78.0
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.1e-69 266.9 191 76.4
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 4.2e-69 265.0 195 74.9
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 8.7e-67 257.3 192 75.0
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 8.7e-67 257.3 188 74.5
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.5e-66 256.5 192 74.5
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 2.5e-66 255.8 192 74.5
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 5.6e-66 254.6 194 73.7
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 9.6e-66 253.8 160 83.8
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 9.6e-66 253.8 191 73.8
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 1.3e-65 253.4 159 84.9
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 1.1e-64 250.4 167 78.4
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.4e-64 250.0 164 80.5
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.8e-64 249.6 195 69.7
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 1.8e-64 249.6 159 83.6
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 2.4e-64 249.2 189 74.1
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 2.4e-64 249.2 169 79.9
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 4.0e-64 248.4 159 83.0
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 5.3e-64 248.1 192 71.9
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 5.3e-64 248.1 188 72.9
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 5.3e-64 248.1 192 72.4
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 9.0e-64 247.3 160 80.6
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 9.0e-64 247.3 159 83.0
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 9.0e-64 247.3 185 73.5
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 1.2e-63 246.9 169 76.9
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 1.2e-63 246.9 189 71.4
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 2.0e-63 246.1 171 74.9
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.6e-63 245.7 159 82.4
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 2.6e-63 245.7 171 74.9
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 4.5e-63 245.0 172 75.0
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 4.5e-63 245.0 191 70.7
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 4.5e-63 245.0 185 72.4
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 5.8e-63 244.6 192 69.8
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 5.8e-63 244.6 177 75.1
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.3e-62 243.4 167 76.6
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.3e-62 243.4 193 69.9
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.3e-62 243.4 163 77.3
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.3e-62 243.4 178 73.6
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 2.9e-62 242.3 166 75.3
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.8e-62 241.9 161 77.0
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 6.5e-62 241.1 187 69.0
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.1e-61 240.4 160 77.5
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.4e-61 240.0 167 73.7
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.9e-61 239.6 175 73.1
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 1.9e-61 239.6 156 78.8
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.9e-61 239.6 192 69.8
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.5e-61 239.2 165 77.0
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 3.2e-61 238.8 159 78.0
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 9.3e-61 237.3 157 80.3
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 9.3e-61 237.3 191 68.1
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.2e-60 236.9 192 67.2
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 1.6e-60 236.5 192 67.2
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 1.6e-60 236.5 176 71.0
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 1.6e-60 236.5 166 73.5
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 1.6e-60 236.5 166 73.5
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.1e-60 236.1 159 77.4
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.1e-60 236.1 179 70.9
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.1e-60 236.1 169 75.7
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.7e-60 235.7 166 75.3
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 2.7e-60 235.7 192 68.8
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.7e-60 235.7 176 72.2
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 3.5e-60 235.3 196 67.3
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 3.5e-60 235.3 164 74.4
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 3.5e-60 235.3 176 71.6
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 3.5e-60 235.3 176 71.6
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.0e-59 233.8 179 70.4
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.0e-59 233.8 190 65.8
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.3e-59 233.4 179 70.4
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 2.3e-59 232.6 183 67.8
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 2.3e-59 232.6 181 68.0
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.0e-59 232.3 166 74.7
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 5.1e-59 231.5 188 66.0
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 5.1e-59 231.5 182 68.1
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 6.7e-59 231.1 164 72.0
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.5e-58 229.9 181 68.0
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 1.5e-58 229.9 183 71.6
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 1.5e-58 229.9 181 67.4
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.9e-58 229.6 180 68.9
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 2.5e-58 229.2 166 70.5
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 2.5e-58 229.2 164 71.3
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 3.3e-58 228.8 181 67.4
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 3.3e-58 228.8 174 69.0
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.3e-58 228.4 191 66.5
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 5.7e-58 228.0 165 72.1
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 1.3e-57 226.9 176 68.8
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.3e-57 226.9 179 69.3
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.3e-57 226.9 157 75.8
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 8.2e-57 224.2 160 71.9
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 1.8e-56 223.0 179 65.9
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 1.8e-56 223.0 154 76.0
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 1.8e-56 223.0 159 73.0
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.4e-56 222.6 186 64.5
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 2.4e-56 222.6 172 70.3
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 6.9e-56 221.1 157 73.2
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.2e-55 220.3 161 72.0
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 1.5e-55 219.9 192 63.5
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 2.6e-55 219.2 168 72.6
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 2.6e-55 219.2 160 70.6
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 2.6e-55 219.2 157 74.5
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 3.4e-55 218.8 171 68.4
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 4.5e-55 218.4 186 64.0
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 5.8e-55 218.0 162 69.8
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 5.8e-55 218.0 171 67.8
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 1.3e-54 216.9 157 73.2
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.9e-54 215.7 171 69.0
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 5.0e-54 214.9 160 68.8
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 8.4e-54 214.2 150 74.0
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 8.4e-54 214.2 176 64.8
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 1.1e-53 213.8 188 62.8
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 2.5e-53 212.6 157 71.3
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.0e-51 207.2 190 62.1
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 1.3e-51 206.8 186 62.4
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 1.3e-51 206.8 158 67.1
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 1.5e-50 203.4 176 62.5
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 6.3e-49 198.0 158 69.0
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.5e-47 193.4 186 59.7
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 2.0e-47 193.0 151 72.8
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 5.9e-47 191.4 225 51.6
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 1.0e-46 190.7 138 70.3
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 6.5e-46 188.0 174 61.5
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 3.6e-44 182.2 150 62.0
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 6.1e-44 181.4 194 55.7
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 7.9e-44 181.0 143 66.4
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 1.4e-43 180.3 136 66.9
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 2.5e-42 176.0 143 62.9
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.2e-41 172.9 112 75.9
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 2.2e-41 172.9 212 51.9
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.3e-38 163.7 105 75.2
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 3.8e-38 162.2 171 56.1
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 8.5e-38 161.0 171 55.6
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.7e-36 155.2 157 58.6
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 7.9e-36 154.5 131 62.6
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 7.9e-36 154.5 134 64.9
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 1.4e-35 153.7 157 53.5
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 8.8e-35 151.0 113 67.3
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.5e-34 150.2 111 72.1
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 3.3e-34 149.1 169 50.9
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 3.3e-34 149.1 145 52.4
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.2e-33 146.4 132 61.4
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.4e-32 143.7 132 60.6
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 5.3e-32 141.7 123 65.0
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 9.1e-32 141.0 92 75.0
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.2e-31 140.6 132 61.4
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.5e-31 140.2 131 58.0
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 4.5e-31 138.7 157 51.0
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 2.9e-30 136.0 83 78.3
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.9e-29 133.3 158 44.3
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 7.2e-29 131.3 154 44.2
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.7e-25 120.2 114 55.3
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 6.5e-22 108.2 96 61.5
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 7.2e-21 104.8 154 42.9
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.4e-16 90.5 87 58.6
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 1.5e-13 80.5 59 66.1
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 8.8e-11 71.2 78 60.3
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 9.1e-08 61.2 98 40.8
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 4.5e-07 58.9 137 35.8


User provided reference genes

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