Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 4.5e-110 401.4 218 100.0
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 1.7e-88 329.7 221 83.3
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 2.4e-87 325.9 218 83.0
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 2.7e-86 322.4 218 81.7
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 2.3e-77 292.7 208 78.4
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 1.2e-73 280.4 243 68.7
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 3.4e-73 278.9 209 80.9
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 2.7e-70 269.2 203 75.9
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 2.7e-70 269.2 203 75.9
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 1.7e-69 266.5 197 76.1
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 3.3e-68 262.3 203 71.9
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 4.3e-68 261.9 213 71.8
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 2.1e-67 259.6 204 74.0
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 2.1e-67 259.6 213 71.4
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 3.1e-66 255.8 200 72.5
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 5.8e-65 251.5 196 73.5
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 6.4e-64 248.1 223 66.4
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 1.1e-63 247.3 196 75.0
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 4.3e-52 208.8 205 63.9
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 4.5e-49 198.7 205 57.6
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 6.5e-48 194.9 199 56.8
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 2.5e-47 193.0 196 56.1
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 4.2e-47 192.2 205 55.6
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 4.2e-47 192.2 199 55.8
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 9.3e-47 191.0 207 55.1
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 1.2e-46 190.7 209 54.5
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 1.6e-46 190.3 208 53.8
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 2.7e-46 189.5 201 54.7
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 2.7e-46 189.5 204 53.9
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 1.8e-45 186.8 160 58.8
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 2.3e-45 186.4 205 52.2
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 2.3e-45 186.4 158 57.6
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 3.0e-45 186.0 181 57.5
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 3.0e-45 186.0 184 57.1
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 3.0e-45 186.0 196 53.6
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 3.0e-45 186.0 176 52.8
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 3.9e-45 185.7 210 52.9
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 3.9e-45 185.7 188 56.9
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 5.1e-45 185.3 181 57.5
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 5.1e-45 185.3 209 55.0
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 6.7e-45 184.9 148 64.2
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 6.7e-45 184.9 204 53.4
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 1.1e-44 184.1 203 53.7
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 1.9e-44 183.3 182 54.9
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 2.5e-44 183.0 183 55.7
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 2.5e-44 183.0 204 52.9
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 2.5e-44 183.0 180 55.6
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 3.3e-44 182.6 199 50.3
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 3.3e-44 182.6 190 51.6
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 9.6e-44 181.0 164 58.5
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 1.3e-43 180.6 209 48.8
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 1.3e-43 180.6 182 56.0
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 1.3e-43 180.6 210 51.9
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 1.6e-43 180.3 181 56.4
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 2.1e-43 179.9 210 50.5
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 2.1e-43 179.9 212 51.4
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 3.7e-43 179.1 205 50.2
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 3.7e-43 179.1 188 55.9
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 4.8e-43 178.7 156 61.5
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 6.3e-43 178.3 210 50.0
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 6.3e-43 178.3 225 48.0
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 8.2e-43 177.9 177 53.7
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 1.4e-42 177.2 178 55.1
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 4.1e-42 175.6 195 53.3
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 5.3e-42 175.3 157 58.0
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 6.9e-42 174.9 169 53.3
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 6.9e-42 174.9 177 54.8
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 9.0e-42 174.5 202 50.5
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 1.2e-41 174.1 218 48.6
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 1.5e-41 173.7 207 49.3
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 1.5e-41 173.7 155 54.2
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 2.0e-41 173.3 213 49.3
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 2.0e-41 173.3 192 53.6
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 2.0e-41 173.3 237 46.4
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 4.5e-41 172.2 219 46.6
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 1.0e-40 171.0 196 51.0
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 1.0e-40 171.0 212 49.1
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 1.3e-40 170.6 202 50.5
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 1.3e-40 170.6 212 49.5
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 1.7e-40 170.2 198 51.5
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 2.2e-40 169.9 169 49.7
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 5.0e-40 168.7 189 52.9
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 1.9e-39 166.8 155 56.8
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 1.2e-38 164.1 143 53.8
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 2.7e-38 162.9 204 49.0
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 6.1e-38 161.8 179 49.2
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 7.9e-38 161.4 219 46.6
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 1.3e-37 160.6 203 46.3
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 1.3e-37 160.6 182 54.9
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 1.8e-37 160.2 144 55.6
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 1.8e-37 160.2 144 55.6
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 2.3e-37 159.8 173 52.0
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 3.0e-37 159.5 181 51.4
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 3.9e-37 159.1 167 58.7
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 8.7e-37 157.9 181 50.3
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 8.7e-37 157.9 115 65.2
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 9.7e-36 154.5 210 48.1
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 3.7e-35 152.5 138 57.2
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 4.8e-35 152.1 211 46.0
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 4.1e-34 149.1 147 57.8
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 5.3e-34 148.7 181 51.9
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 2.0e-33 146.7 207 44.4
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 4.5e-33 145.6 209 44.0
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 1.4e-31 140.6 210 45.2
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 5.5e-31 138.7 133 52.6
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 7.2e-31 138.3 130 55.4
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 1.2e-30 137.5 209 41.6
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 3.9e-29 132.5 129 50.4
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 5.1e-29 132.1 80 77.5
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 2.6e-28 129.8 124 50.8
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 7.4e-28 128.3 198 41.4
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 2.2e-27 126.7 203 42.9
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 2.2e-27 126.7 127 47.2
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 5.3e-26 122.1 97 59.8
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 1.6e-22 110.5 157 46.5
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 6.1e-22 108.6 103 51.5
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 5.2e-21 105.5 136 47.1
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 1.1e-20 104.4 88 58.0
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 4.4e-20 102.4 90 55.6
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 1.2e-14 84.3 122 48.4
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 4.7e-14 82.4 141 39.0
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 2.7e-09 66.6 62 58.1
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 3.8e-08 62.8 65 50.8


User provided reference genes

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