Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G47220 Arabidopsis lyrata HOM05D007297 ORTHO05D009352 2.3e-128 462.2 228 100.0
Thhalv10025549m.g Eutrema salsugineum HOM05D007297 ORTHO05D009352 7.4e-71 271.2 240 63.8
Carub.0007s0016 Capsella rubella HOM05D007297 ORTHO05D009352 4.1e-69 265.4 244 61.5
AT4G38225 Arabidopsis thaliana HOM05D007297 ORTHO05D009352 1.1e-66 257.3 248 60.5
Sp7g37510 Schrenkiella parvula HOM05D007297 ORTHO05D009352 1.2e-65 253.8 245 60.8
CARHR294010 Cardamine hirsuta HOM05D007297 ORTHO05D009352 1.9e-58 229.9 247 58.3
AL7G10130 Arabidopsis lyrata HOM05D002051 ORTHO05D002041 3.6e-57 225.7 202 63.4
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 2.6e-55 219.5 246 55.3
THA.LOC104804081 Tarenaya hassleriana HOM05D007297 ORTHO05D009352 3.8e-51 205.7 235 54.0
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 5.0e-51 205.3 219 56.6
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 1.1e-50 204.1 220 55.9
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 1.2e-49 200.7 222 55.9
Aa31LG6G16890 Aethionema arabicum HOM05D007297 ORTHO05D009352 1.2e-44 184.1 252 51.2
Manes.15G114700 Manihot esculenta HOM05D007297 ORTHO05D009352 1.2e-41 174.1 218 48.6
Potri.004G207400 Populus trichocarpa HOM05D007297 ORTHO05D009352 3.6e-41 172.6 171 55.0
Cpa.g.sc60.2 Carica papaya HOM05D007297 ORTHO05D009352 1.4e-40 170.6 174 54.0
TWI79G0145 Tripterygium wilfordii HOM05D007297 ORTHO05D009352 8.8e-40 167.9 223 44.8
Sed0028195 Sechium edule HOM05D007297 ORTHO05D009352 5.7e-39 165.2 175 49.7
COL.COLO4_33139 Corchorus olitorius HOM05D007297 ORTHO05D009352 7.5e-39 164.9 174 54.0
Ciclev10028691m.g Citrus clementina HOM05D007297 ORTHO05D009352 9.8e-39 164.5 230 45.7
CiPaw.05G093700 Carya illinoinensis HOM05D007297 ORTHO05D009352 4.9e-38 162.2 187 50.3
QL11p056524 Quercus lobata HOM05D007297 ORTHO05D009352 8.3e-38 161.4 222 46.4
Thecc.02G146900 Theobroma cacao HOM05D007297 ORTHO05D009352 1.1e-37 161.0 186 48.4
Eucgr.H04994 Eucalyptus grandis HOM05D007297 ORTHO05D009352 1.4e-37 160.6 225 46.2
MELO3C015706.2 Cucumis melo HOM05D007297 ORTHO05D009352 1.8e-37 160.2 236 42.8
ECA233G4247 Erigeron canadensis HOM05D007297 ORTHO05D009352 2.4e-37 159.8 203 47.8
CsaV3_7G002000 Cucumis sativus L. HOM05D007297 ORTHO05D009352 3.1e-37 159.5 150 56.0
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 4.1e-37 159.1 178 48.9
Dinv14179 Davidia involucrata HOM05D007297 ORTHO05D009352 9.1e-37 157.9 148 54.7
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 9.1e-37 157.9 233 44.2
Duzib132G0252 Durio zibethinus HOM05D007297 ORTHO05D009352 1.2e-36 157.5 180 51.1
ClCG02G003330 Citrullus lanatus HOM05D007297 ORTHO05D009352 2.0e-36 156.8 177 48.6
CANSAT25G3874 Cannabis sativa HOM05D007297 ORTHO05D009352 2.7e-36 156.4 146 55.5
Cfa010687 Carpinus fangiana HOM05D007297 ORTHO05D009352 3.5e-36 156.0 188 47.9
Gorai.002G014500 Gossypium raimondii HOM05D007297 ORTHO05D009352 7.7e-36 154.8 181 47.5
Oeu032716.1 Olea europaea HOM05D007297 ORTHO05D009352 1.0e-35 154.5 144 56.2
Aqoxy5G00964 Aquilegia oxysepala HOM05D007297 ORTHO05D009352 1.3e-35 154.1 223 44.4
Gohir.D01G012700 Gossypium hirsutum HOM05D007297 ORTHO05D009352 1.3e-35 154.1 178 49.4
MBI05_g18176_MAGBIO Magnolia biondii HOM05D007297 ORTHO05D009352 1.3e-35 154.1 223 43.0
Gohir.A01G011500 Gossypium hirsutum HOM05D007297 ORTHO05D009352 2.9e-35 152.9 177 48.6
PSO170G5512 Papaver somniferum HOM05D007297 ORTHO05D009352 2.9e-35 152.9 182 44.0
MSTRG.27611 Avicennia marina HOM05D007297 ORTHO05D009352 3.8e-35 152.5 223 44.8
HanXRQChr16g0515151 Helianthus annuus HOM05D007297 ORTHO05D009352 3.8e-35 152.5 199 46.2
Migut.N01363 Erythranthe guttata HOM05D007297 ORTHO05D009352 6.6e-35 151.8 149 55.0
Glyma.10G244200 Glycine max HOM05D007297 ORTHO05D009352 6.6e-35 151.8 153 54.2
CSS0008013 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 8.6e-35 151.4 146 54.8
Phvul.007G061600 Phaseolus vulgaris HOM05D007297 ORTHO05D009352 1.1e-34 151.0 153 55.6
TAR381G0094 Trochodendron aralioides HOM05D007297 ORTHO05D009352 1.1e-34 151.0 192 43.8
MD05G1140800 Malus domestica HOM05D007297 ORTHO05D009352 1.9e-34 150.2 214 43.5
MD10G1142400 Malus domestica HOM05D007297 ORTHO05D009352 1.9e-34 150.2 218 45.9
DCAR_006267 Daucus carota HOM05D007297 ORTHO05D009352 2.5e-34 149.8 140 57.1
Nitab4.5_0001700g0150 Nicotiana tabacum HOM05D007297 ORTHO05D009352 2.5e-34 149.8 159 52.2
PGR042G0917 Punica granatum HOM05D007297 ORTHO05D009352 2.5e-34 149.8 211 47.9
arahy.Tifrunner.gnm1.ann1.114EL0 Arachis hypogaea HOM05D007297 ORTHO05D009352 3.3e-34 149.4 140 57.1
arahy.Tifrunner.gnm1.ann1.F5MDAV Arachis hypogaea HOM05D007297 ORTHO05D009352 3.3e-34 149.4 140 57.1
Rhsim05G0044900 Rhododendron simsii HOM05D007297 ORTHO05D009352 4.2e-34 149.1 197 45.7
FAN27G2312 Fragaria x ananassa HOM05D007297 ORTHO05D009352 5.5e-34 148.7 204 42.2
VMungo0720G0116 Vigna mungo HOM05D007297 ORTHO05D009352 9.5e-34 147.9 151 53.6
EL10Ac9g21544 Beta vulgaris HOM05D007297 ORTHO05D009352 1.2e-33 147.5 193 46.1
AUR62010181 Chenopodium quinoa HOM05D007297 ORTHO05D009352 1.6e-33 147.1 189 47.1
FAN15G2550 Fragaria x ananassa HOM05D007297 ORTHO05D009352 1.6e-33 147.1 204 41.7
Lsat_1_v5_gn_8_120880 Lactuca sativa HOM05D007297 ORTHO05D009352 1.6e-33 147.1 161 49.7
Solyc10g074580.2 Solanum lycopersicum HOM05D007297 ORTHO05D009352 2.1e-33 146.7 151 51.7
AUR62013182 Chenopodium quinoa HOM05D007297 ORTHO05D009352 2.8e-33 146.4 221 42.5
FvH4_2g16900 Fragaria vesca HOM05D007297 ORTHO05D009352 4.7e-33 145.6 204 41.2
RcHm_v2.0_Chr6g0281021 Rosa chinensis HOM05D007297 ORTHO05D009352 4.7e-33 145.6 211 42.2
Sopen10g027070 Solanum pennellii HOM05D007297 ORTHO05D009352 6.1e-33 145.2 151 51.7
Lj5g0024553 Lotus japonicus HOM05D007297 ORTHO05D009352 1.0e-32 144.4 140 54.3
Hund06358 Selenicereus undatus HOM05D007297 ORTHO05D009352 1.0e-32 144.4 199 44.2
ATR0807G066 Amborella trichopoda HOM05D007297 ORTHO05D009352 1.4e-32 144.1 173 47.4
Peaxi162Scf00374g00734 Petunia axillaris HOM05D007297 ORTHO05D009352 1.8e-32 143.7 142 53.5
vmacro23445 Vaccinium macrocarpon HOM05D007297 ORTHO05D009352 1.8e-32 143.7 147 53.1
Ah.01g017630 Amaranthus hybridus HOM05D007297 ORTHO05D009352 5.2e-32 142.1 149 53.0
Nn5g31034 Nelumbo nucifera HOM05D007297 ORTHO05D009352 5.2e-32 142.1 174 43.7
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 6.8e-32 141.7 174 45.4
PGSC0003DMG400016829 Solanum tuberosum HOM05D007297 ORTHO05D009352 6.8e-32 141.7 183 44.3
Ca_10853_v3 Cicer arietinum L. HOM05D007297 ORTHO05D009352 8.9e-32 141.4 140 54.3
Sc18g0005810 Simmondsia chinensis HOM05D007297 ORTHO05D009352 2.0e-31 140.2 147 51.0
unitig_26.g9984 Utricularia gibba HOM05D007297 ORTHO05D009352 2.6e-31 139.8 146 52.1
CDE05G3233 Ceratophyllum demersum HOM05D007297 ORTHO05D009352 4.4e-31 139.0 145 49.7
SalBow5G1065 Salvia bowleyana HOM05D007297 ORTHO05D009352 5.7e-31 138.7 241 41.5
SalBow5G0092 Salvia bowleyana HOM05D007297 ORTHO05D009352 9.8e-31 137.9 241 41.5
Medtr1g102880 Medicago truncatula HOM05D007297 ORTHO05D009352 4.9e-30 135.6 140 53.6
Psat6g204280 Pisum sativum HOM05D007297 ORTHO05D009352 4.9e-30 135.6 140 52.1
SGA_v2.0_scaffold98G29306 Striga asiatica HOM05D007297 ORTHO05D009352 4.1e-29 132.5 184 41.8
Os03g0128800 Oryza sativa ssp. japonica HOM05D007297 ORTHO05D009352 3.5e-28 129.4 198 41.4
HPP92_012647 Vanilla planifolia HOM05D007297 ORTHO05D009352 5.9e-28 128.6 182 42.3
Zm00001eb002190 Zea mays HOM05D007297 ORTHO05D009352 5.9e-28 128.6 171 42.7
MD05G1140400 Malus domestica HOM05D007297 ORTHO05D009352 8.6e-27 124.8 176 43.2
Mapoly0005s0259 Marchantia polymorpha HOM05D007297 ORTHO05D009352 2.6e-23 113.2 195 37.4
Actinidia32005 Actinidia chinensis HOM05D007297 ORTHO05D009352 3.2e-21 106.3 101 56.4
CSS0007337 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 5.4e-21 105.5 113 50.4
CBR_g49409 Chara braunii HOM05D001007 ORTHO05D008005 2.0e-20 103.6 159 41.5
AagrBONN_evm.TU.Sc2ySwM_117.3353 Anthoceros agrestis HOM05D007297 ORTHO05D009352 3.5e-20 102.8 175 36.0
MD11G1100600 Malus domestica HOM05D007297 ORTHO05D009352 3.3e-18 96.3 83 61.4
SMO356G0187 Selaginella moellendorffii HOM05D007297 ORTHO05D009352 5.6e-18 95.5 140 37.9
Pp3c17_19510 Physcomitrium patens HOM05D007297 ORTHO05D009352 8.9e-16 88.2 153 37.9
Cpa.g.sc2396.1 Carica papaya HOM05D007297 ORTHO05D009352 3.7e-14 82.8 74 55.4
Lj9A408T85 Lonicera japonica HOM05D007297 ORTHO05D009352 8.3e-14 81.6 100 45.0
Pp3c2_4700 Physcomitrium patens HOM05D007297 ORTHO05D009352 1.5e-07 60.8 137 31.4
Eucgr.L00579 Eucalyptus grandis HOM05D007297 ORTHO05D009352 9.9e-07 58.2 97 40.2
Atru.chr5.3567 Acer truncatum HOM05D007297 ORTHO05D009352 1.7e-06 57.4 58 44.8


User provided reference genes

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