Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 8.7e-135 483.8 271 100.0
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 7.6e-123 444.1 297 86.5
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 2.4e-121 439.1 295 86.8
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.2e-121 438.3 296 86.5
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 2.1e-120 436.0 295 83.7
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 2.7e-120 435.6 296 78.7
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 2.5e-118 429.1 297 80.1
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.3e-117 426.8 297 77.1
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 3.7e-117 425.2 297 76.8
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 6.2e-117 424.5 297 76.8
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.2e-115 420.2 251 88.0
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 1.7e-114 416.4 295 76.9
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 1.1e-113 413.7 316 72.2
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 1.6e-112 409.8 316 71.8
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.9e-110 402.9 294 74.8
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 5.6e-110 401.4 295 75.6
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.6e-109 399.8 290 75.5
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 8.2e-109 397.5 299 73.9
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.1e-108 397.1 259 81.5
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.1e-105 387.1 271 83.4
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 4.6e-104 381.7 303 69.0
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 7.9e-104 380.9 302 68.5
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 7.9e-104 380.9 296 68.6
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.8e-103 379.8 300 69.3
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 2.3e-103 379.4 302 68.2
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 1.5e-102 376.7 262 78.2
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 5.7e-102 374.8 312 65.7
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 5.7e-102 374.8 300 67.3
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 7.4e-102 374.4 296 66.9
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 7.4e-102 374.4 255 79.2
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 7.4e-102 374.4 296 69.3
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 1.3e-101 373.6 298 67.1
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 1.6e-101 373.2 299 67.2
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 2.2e-101 372.9 302 66.2
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 6.3e-101 371.3 302 66.6
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.8e-100 369.8 303 66.7
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.4e-100 369.4 297 66.7
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 2.4e-100 369.4 302 66.6
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 2.4e-100 369.4 301 66.1
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 3.1e-100 369.0 298 66.1
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 4.1e-100 368.6 304 68.1
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 4.1e-100 368.6 304 67.8
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 5.3e-100 368.2 296 65.9
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 1.2e-99 367.1 296 68.2
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 4.5e-99 365.2 297 67.0
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 7.6e-99 364.4 295 67.5
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.7e-98 363.2 292 67.8
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.2e-98 362.8 304 65.1
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 3.8e-98 362.1 302 66.2
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 5.0e-98 361.7 313 66.5
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.0e-98 361.7 292 67.5
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 5.0e-98 361.7 298 67.4
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 6.5e-98 361.3 304 64.8
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 8.5e-98 360.9 304 65.1
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 8.5e-98 360.9 300 64.3
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.1e-97 360.5 292 67.5
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.9e-97 359.8 289 67.8
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 2.5e-97 359.4 301 66.4
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 3.2e-97 359.0 290 67.2
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.6e-96 356.7 300 63.7
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.6e-96 356.7 262 72.5
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.1e-96 356.3 300 66.3
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.7e-96 355.9 306 65.0
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.4e-95 353.6 302 65.2
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 1.8e-95 353.2 292 67.5
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.3e-95 352.8 302 63.2
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 3.9e-95 352.1 300 66.0
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 8.8e-95 350.9 300 65.0
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.1e-94 350.5 303 62.7
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.5e-94 350.1 297 65.7
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.5e-94 350.1 294 65.6
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 5.7e-94 348.2 292 66.1
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 9.7e-94 347.4 261 69.3
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 1.7e-93 346.7 298 63.8
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.7e-93 346.7 290 65.5
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 2.8e-93 345.9 261 69.3
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 2.8e-93 345.9 261 69.3
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.7e-93 345.5 297 65.7
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.4e-92 343.6 287 65.9
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 6.9e-92 341.3 215 84.2
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 9.1e-92 340.9 264 69.7
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 9.1e-92 340.9 302 63.2
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.6e-91 339.3 295 64.4
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.5e-91 338.6 295 64.4
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 5.9e-91 338.2 261 68.2
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.0e-90 337.4 293 62.5
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.7e-90 336.7 296 64.9
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 2.2e-90 336.3 282 65.6
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.9e-90 335.9 303 62.4
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.1e-89 334.0 282 64.9
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 2.5e-89 332.8 295 63.7
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 3.2e-89 332.4 290 63.1
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 3.2e-89 332.4 297 62.0
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 9.4e-89 330.9 346 56.9
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.6e-88 330.1 292 61.3
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 2.7e-88 329.3 283 64.7
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 4.7e-88 328.6 261 67.8
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 6.1e-88 328.2 295 61.4
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 7.9e-88 327.8 261 67.4
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 7.9e-88 327.8 292 61.0
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.4e-87 327.0 293 61.8
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 3.0e-87 325.9 289 62.3
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 6.3e-85 318.2 298 59.1
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 4.5e-83 312.0 246 69.1
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 4.5e-83 312.0 302 60.3
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 4.5e-83 312.0 295 62.7
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 5.9e-83 311.6 246 69.1
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 7.7e-83 311.2 243 70.0
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 7.7e-83 311.2 226 73.9
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 2.2e-82 309.7 292 57.9
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.0e-79 300.8 246 66.3
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.5e-78 297.0 228 71.1
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 2.2e-77 293.1 254 64.6
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 6.3e-77 291.6 304 54.6
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 8.2e-77 291.2 235 66.4
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 1.8e-76 290.0 227 69.2
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.6e-75 286.2 286 55.9
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.2e-74 283.1 257 63.8
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 4.7e-72 275.4 279 56.6
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 3.7e-69 265.8 293 53.9
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 8.2e-69 264.6 205 70.2
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 4.5e-67 258.8 238 60.9
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.1e-65 254.2 233 63.1
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.1e-65 254.2 215 66.5
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.1e-64 250.0 179 74.3
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 2.3e-63 246.5 249 56.6
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.0e-63 246.1 179 70.4
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 4.4e-62 242.3 243 56.8
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 7.7e-59 231.5 237 56.1
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.7e-58 230.3 230 60.9
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 7.2e-57 224.9 207 58.9
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.2e-56 224.2 317 42.3
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.6e-56 223.8 303 45.2
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 2.8e-56 223.0 302 43.4
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.4e-55 220.7 214 60.3
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 6.3e-53 211.8 269 46.8
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.2e-51 207.6 179 60.3
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 5.0e-50 202.2 221 52.9
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.4e-47 194.1 255 48.6
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 1.8e-47 193.7 177 55.4
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 6.8e-47 191.8 128 75.0
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.4e-46 189.1 163 60.7
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 3.3e-41 172.9 143 66.4
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.3e-41 172.6 198 53.0
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.2e-40 171.0 120 76.7
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 6.0e-35 152.1 139 61.2
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.0e-34 151.4 213 39.0
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.7e-32 142.5 137 59.1
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 2.6e-30 136.7 170 51.8
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.3e-29 134.4 77 84.4
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 9.2e-20 101.7 66 80.3
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.1e-15 88.2 56 78.6
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.2e-14 84.7 107 48.6
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 5.8e-14 82.4 112 47.3
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 4.9e-13 79.3 42 88.1
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 9.3e-12 75.1 45 84.4
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.6e-11 72.8 45 77.8
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.0e-10 71.6 65 58.5
BcaNung06412 Brassica carinata HOM05D004545 ORTHO05D095766 5.3e-07 59.3 114 38.6


User provided reference genes

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