Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G45940 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.9e-62 242.3 120 100.0
AT2G25010 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 5.7e-38 161.0 111 76.6
AL4G16100 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 6.3e-37 157.5 111 74.8
Sp4g03990 Schrenkiella parvula HOM05D000176 ORTHO05D000106 6.3e-37 157.5 111 74.8
Thhalv10000135m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 1.4e-36 156.4 111 73.9
BolC4t27041H Brassica oleracea HOM05D000176 ORTHO05D000106 2.6e-35 152.1 110 72.7
BcaC02g08378 Brassica carinata HOM05D000176 ORTHO05D000106 7.7e-35 150.6 111 71.2
C04p55010 Brassica napus HOM05D000176 ORTHO05D000106 7.7e-35 150.6 111 71.2
A04p19430 Brassica napus HOM05D000176 ORTHO05D000106 1.0e-34 150.2 110 71.8
BraA04t17538Z Brassica rapa HOM05D000176 ORTHO05D000106 1.0e-34 150.2 110 71.8
BcaB06g28031 Brassica carinata HOM05D000176 ORTHO05D000106 5.0e-34 147.9 111 70.3
Aa31sc83G70 Aethionema arabicum HOM05D000176 ORTHO05D000106 2.5e-33 145.6 111 67.6
THA.LOC104823099 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 2.5e-33 145.6 111 66.7
Aa31LG11G4340 Aethionema arabicum HOM05D000176 ORTHO05D000106 7.5e-14 80.9 111 42.3
Thhalv10007522m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 1.7e-13 79.7 111 42.3
CARHR018550 Cardamine hirsuta HOM05D000176 ORTHO05D000106 2.2e-13 79.3 111 42.3
Sp1g16000 Schrenkiella parvula HOM05D000176 ORTHO05D000106 3.7e-13 78.6 111 41.4
THA.LOC104799018 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 3.7e-13 78.6 111 42.3
AL1G30280 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 4.8e-13 78.2 111 40.5
AT1G17930 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 4.8e-13 78.2 111 40.5
BcaB07g34015 Brassica carinata HOM05D000176 ORTHO05D000106 1.8e-12 76.3 112 42.9
C05p16290 Brassica napus HOM05D000176 ORTHO05D000106 1.8e-12 76.3 112 42.9
BolC5t30331H Brassica oleracea HOM05D000176 ORTHO05D000106 1.8e-12 76.3 112 42.9
A06p13970 Brassica napus HOM05D000176 ORTHO05D000106 3.1e-12 75.5 112 42.9
BraA06t24537Z Brassica rapa HOM05D000176 ORTHO05D000106 3.1e-12 75.5 112 42.9
CANSAT56G1843 Cannabis sativa HOM05D000176 ORTHO05D000106 1.6e-11 73.2 103 42.7
FvH4_6g33711 Fragaria vesca HOM05D000176 ORTHO05D000106 1.6e-11 73.2 106 42.5
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 3.5e-11 72.0 106 41.5
Ciclev10025397m.g Citrus clementina HOM05D000176 ORTHO05D000106 4.5e-11 71.6 74 51.4
Prupe.3G047800 Prunus persica HOM05D000176 ORTHO05D000106 4.5e-11 71.6 103 41.7
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 5.9e-11 71.2 103 41.7
BolC4t27039H Brassica oleracea HOM05D000176 ORTHO05D000106 7.7e-11 70.9 38 86.8
ClCG09G020530 Citrullus lanatus HOM05D000176 ORTHO05D000106 7.7e-11 70.9 111 42.3
CsaV3_5G025870 Cucumis sativus L. HOM05D000176 ORTHO05D000106 7.7e-11 70.9 111 42.3
AT2G04865 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 1.0e-10 70.5 111 40.5
MELO3C002881.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.0e-10 70.5 111 42.3
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 1.3e-10 70.1 115 40.0
arahy.Tifrunner.gnm1.ann1.6TXF5J Arachis hypogaea HOM05D000176 ORTHO05D000106 2.3e-10 69.3 71 50.7
FvH4_6g37771 Fragaria vesca HOM05D000176 ORTHO05D000106 2.3e-10 69.3 111 39.6
Ca_23329_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 2.9e-10 68.9 72 50.0
RcHm_v2.0_Chr2g0150841 Rosa chinensis HOM05D000176 ORTHO05D000106 3.8e-10 68.6 103 41.7
Sed0026480 Sechium edule HOM05D000176 ORTHO05D000106 3.8e-10 68.6 111 41.4
Sabra01G0157300 Salix brachista HOM05D000176 ORTHO05D000106 5.0e-10 68.2 77 45.5
arahy.Tifrunner.gnm1.ann1.PINR01 Arachis hypogaea HOM05D000176 ORTHO05D000106 6.6e-10 67.8 71 49.3
A03p44500 Brassica napus HOM05D000176 ORTHO05D000106 6.6e-10 67.8 111 38.7
C03p55310 Brassica napus HOM05D000176 ORTHO05D000106 6.6e-10 67.8 111 38.7
BolC3t17803H Brassica oleracea HOM05D000176 ORTHO05D000106 6.6e-10 67.8 111 38.7
BraA03t13583Z Brassica rapa HOM05D000176 ORTHO05D000106 6.6e-10 67.8 111 38.7
Lj6g0005713 Lotus japonicus HOM05D000176 ORTHO05D000106 8.6e-10 67.4 103 40.8
MD09G1156100 Malus domestica HOM05D000176 ORTHO05D000106 8.6e-10 67.4 103 40.8
Psat4g187840 Pisum sativum HOM05D000176 ORTHO05D000106 1.1e-09 67.0 71 49.3
Eucgr.A01958 Eucalyptus grandis HOM05D000176 ORTHO05D000106 1.5e-09 66.6 103 40.8
MD17G1142300 Malus domestica HOM05D000176 ORTHO05D000106 1.5e-09 66.6 103 39.8
QL05p010466 Quercus lobata HOM05D000176 ORTHO05D000106 1.5e-09 66.6 111 37.8
Oeu063771.2 Olea europaea HOM05D000176 ORTHO05D000106 1.9e-09 66.2 103 41.7
MD17G1142200 Malus domestica HOM05D000176 ORTHO05D000106 2.5e-09 65.9 103 40.8
Sp3g23470 Schrenkiella parvula HOM05D000176 ORTHO05D000106 2.5e-09 65.9 111 38.7
GSVIVG01006780001 Vitis vinifera HOM05D000176 ORTHO05D000106 2.5e-09 65.9 103 39.8
AL3G42490 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 3.3e-09 65.5 111 39.6
Prupe.4G252400 Prunus persica HOM05D000176 ORTHO05D000106 3.3e-09 65.5 103 41.7
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 4.2e-09 65.1 103 39.8
Nitab4.5_0000476g0120 Nicotiana tabacum HOM05D000176 ORTHO05D000106 4.2e-09 65.1 103 41.7
Atru.chr6.3350 Acer truncatum HOM05D000176 ORTHO05D000106 5.5e-09 64.7 111 37.8
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 5.5e-09 64.7 103 40.8
CSS0045164 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 5.5e-09 64.7 103 40.8
RcHm_v2.0_Chr5g0052481 Rosa chinensis HOM05D000176 ORTHO05D000106 5.5e-09 64.7 111 37.8
Aa31sc575G20 Aethionema arabicum HOM05D000176 ORTHO05D000106 7.2e-09 64.3 111 37.8
Thhalv10002429m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 7.2e-09 64.3 111 38.7
Lj3g0023710 Lotus japonicus HOM05D000176 ORTHO05D000106 7.2e-09 64.3 72 45.8
Ca_14624_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 9.5e-09 63.9 103 38.8
Ciclev10014335m.g Citrus clementina HOM05D000176 ORTHO05D000106 9.5e-09 63.9 111 38.7
Prupe.3G169000 Prunus persica HOM05D000176 ORTHO05D000106 9.5e-09 63.9 103 38.8
Ah.16g107440 Amaranthus hybridus HOM05D000176 ORTHO05D000106 1.2e-08 63.5 111 39.6
AUR62038386 Chenopodium quinoa HOM05D000176 ORTHO05D000106 1.2e-08 63.5 111 38.7
AUR62038389 Chenopodium quinoa HOM05D000176 ORTHO05D000106 1.2e-08 63.5 111 38.7
Duzib211G0089 Durio zibethinus HOM05D000176 ORTHO05D000106 1.2e-08 63.5 103 39.8
VMungo0540G2186 Vigna mungo HOM05D000176 ORTHO05D000106 1.2e-08 63.5 103 38.8
arahy.Tifrunner.gnm1.ann1.ZG7XLL Arachis hypogaea HOM05D000176 ORTHO05D000106 1.6e-08 63.2 103 39.8
Cpa.g.sc136.13 Carica papaya HOM05D000176 ORTHO05D000106 1.6e-08 63.2 103 40.8
Solyc05g056010.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.6e-08 63.2 103 40.8
Sopen05g034420 Solanum pennellii HOM05D000176 ORTHO05D000106 1.6e-08 63.2 103 40.8
PGSC0003DMG400023346 Solanum tuberosum HOM05D000176 ORTHO05D000106 1.6e-08 63.2 103 40.8
FvH4_3g28611 Fragaria vesca HOM05D000176 ORTHO05D000106 2.1e-08 62.8 111 38.7
PGR042G1331 Punica granatum HOM05D000176 ORTHO05D000106 2.1e-08 62.8 103 40.8
Hund07743 Selenicereus undatus HOM05D000176 ORTHO05D000106 2.1e-08 62.8 111 37.8
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 2.8e-08 62.4 111 38.7
Peaxi162Scf00384g01218 Petunia axillaris HOM05D000176 ORTHO05D000106 2.8e-08 62.4 103 39.8
Rhsim06G0121800 Rhododendron simsii HOM05D000176 ORTHO05D000106 2.8e-08 62.4 103 38.8
TWI36G1460 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 2.8e-08 62.4 103 39.8
MELO3C019704.2 Cucumis melo HOM05D000176 ORTHO05D000106 3.6e-08 62.0 103 39.8
Duzib138G0102 Durio zibethinus HOM05D000176 ORTHO05D000106 3.6e-08 62.0 103 38.8
Lj3C925T6 Lonicera japonica HOM05D000176 ORTHO05D000106 3.6e-08 62.0 103 40.8
TPR.G1842 Trifolium pratense HOM05D000176 ORTHO05D000106 3.6e-08 62.0 103 36.9
MSTRG.10797 Avicennia marina HOM05D000176 ORTHO05D000106 4.7e-08 61.6 103 39.8
CARHR102890 Cardamine hirsuta HOM05D000176 ORTHO05D000106 4.7e-08 61.6 111 36.9
Dinv18200 Davidia involucrata HOM05D000176 ORTHO05D000106 4.7e-08 61.6 103 39.8
Migut.K00126 Erythranthe guttata HOM05D000176 ORTHO05D000106 4.7e-08 61.6 103 38.8
QL08p043592 Quercus lobata HOM05D000176 ORTHO05D000106 4.7e-08 61.6 103 37.9
CSS0002500 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.1e-08 61.2 103 38.8
CSS0014815 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.1e-08 61.2 103 38.8
Lsat_1_v5_gn_7_67341 Lactuca sativa HOM05D000176 ORTHO05D000106 6.1e-08 61.2 103 38.8
EL10As19g24186 Beta vulgaris HOM05D000176 ORTHO05D000106 8.0e-08 60.8 111 37.8
Atru.chr6.3553_Atru.chr6.3554 Acer truncatum HOM05D000176 ORTHO05D000106 1.0e-07 60.5 111 35.1
Psat5g183880 Pisum sativum HOM05D000176 ORTHO05D000106 1.0e-07 60.5 103 36.9
Sed0012746 Sechium edule HOM05D000176 ORTHO05D000106 1.0e-07 60.5 111 36.9
arahy.Tifrunner.gnm1.ann1.B0WW5W Arachis hypogaea HOM05D000176 ORTHO05D000106 1.4e-07 60.1 103 38.8
CsaV3_6G015670 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.8e-07 59.7 103 38.8
Sabra02G0169600 Salix brachista HOM05D000176 ORTHO05D000106 1.8e-07 59.7 103 39.8
HanXRQChr09g0246821 Helianthus annuus HOM05D000176 ORTHO05D000106 2.3e-07 59.3 103 36.9
Lalb_Chr20g0114151 Lupinus albus HOM05D000176 ORTHO05D000106 4.0e-07 58.5 111 35.1
Gorai.001G193000 Gossypium raimondii HOM05D000176 ORTHO05D000106 5.2e-07 58.2 103 36.9
THA.LOC104808853 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 6.8e-07 57.8 111 35.1
Lalb_Chr15g0080531 Lupinus albus HOM05D000176 ORTHO05D000106 8.9e-07 57.4 103 35.9
ECA240G4387 Erigeron canadensis HOM05D000176 ORTHO05D000106 1.2e-06 57.0 103 35.9
AUR62022514 Chenopodium quinoa HOM05D000176 ORTHO05D000106 5.7e-06 54.7 111 37.8
TAR075G0001 Trochodendron aralioides HOM05D000176 ORTHO05D000106 9.8e-06 53.9 77 37.7


User provided reference genes

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