Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 5.2e-300 1033.9 633 100.0
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 5.8e-267 924.1 640 92.7
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.3e-215 752.7 649 71.3
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.4e-207 726.9 652 79.6
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 6.8e-199 698.0 672 74.1
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 6.0e-195 684.9 666 75.4
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 8.1e-168 594.7 652 71.0
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 1.7e-165 587.0 665 70.1
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.2e-165 586.6 670 69.9
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.1e-161 574.3 697 66.7
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 9.6e-153 544.7 659 58.3
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 3.2e-140 503.1 704 59.8
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 9.1e-135 485.0 652 63.8
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.2e-132 476.1 687 60.3
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 6.8e-74 282.7 563 49.9
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 8.9e-74 282.3 263 66.5
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.7e-70 270.8 579 47.3
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 5.1e-69 266.5 563 49.2
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 7.3e-68 262.7 734 43.1
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.1e-67 261.2 574 46.3
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.8e-66 258.1 569 46.9
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 5.8e-65 253.1 729 42.1
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 7.6e-65 252.7 752 38.3
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 9.9e-65 252.3 732 42.2
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 8.4e-64 249.2 634 39.3
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 5.4e-63 246.5 754 40.1
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 9.3e-63 245.7 726 37.5
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.7e-62 244.2 698 37.1
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 3.0e-61 240.7 758 37.6
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.5e-60 238.4 770 40.3
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.9e-60 238.0 691 37.8
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 4.3e-60 236.9 643 41.2
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.4e-58 231.1 743 41.3
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 2.4e-58 231.1 570 41.6
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 4.0e-58 230.3 717 39.5
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.7e-56 224.9 692 42.3
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.8e-56 223.8 681 38.9
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 3.8e-56 223.8 743 41.7
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 5.4e-55 219.9 718 34.3
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 6.0e-54 216.5 715 33.7
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 7.9e-54 216.1 778 37.8
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.0e-53 215.7 772 39.2
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.5e-52 211.8 731 43.6
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.9e-52 211.5 699 36.3
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.9e-52 211.5 699 36.3
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 2.5e-52 211.1 777 37.1
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 2.5e-52 211.1 592 37.5
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.5e-52 211.1 682 39.0
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 3.3e-52 210.7 803 39.5
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 3.3e-52 210.7 707 39.7
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 4.3e-52 210.3 690 41.2
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 7.4e-52 209.5 749 37.7
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 9.6e-52 209.1 719 41.4
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.3e-51 208.8 732 35.0
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.6e-51 208.4 649 42.8
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 2.1e-51 208.0 700 36.6
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 2.8e-51 207.6 778 38.2
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 2.8e-51 207.6 712 41.0
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.8e-51 206.8 700 36.4
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 4.8e-51 206.8 770 38.8
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.4e-50 204.5 661 38.1
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.2e-49 202.2 723 39.0
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.0e-49 201.4 619 39.1
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 2.0e-49 201.4 713 42.6
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.6e-49 201.1 646 40.1
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 2.6e-49 201.1 694 34.9
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 5.8e-49 199.9 619 41.0
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.3e-48 198.7 758 36.4
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.2e-48 198.0 702 36.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 8.4e-48 196.1 722 36.7
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 1.1e-47 195.7 758 40.6
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.4e-47 195.3 702 39.6
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 4.2e-47 193.7 785 35.7
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.5e-47 193.4 668 36.1
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 2.1e-46 191.4 725 39.9
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 2.7e-46 191.0 736 38.0
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 3.5e-46 190.7 684 41.7
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 4.6e-46 190.3 638 34.6
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 6.0e-46 189.9 712 34.1
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 7.9e-46 189.5 618 35.4
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.3e-45 188.7 711 37.6
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 2.3e-45 188.0 714 38.5
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 3.0e-45 187.6 642 33.0
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 5.1e-45 186.8 629 37.4
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.3e-44 184.1 746 34.5
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 1.3e-43 182.2 687 34.4
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 2.1e-43 181.4 662 34.7
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.1e-43 181.4 688 36.9
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 4.8e-43 180.3 369 42.0
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 6.2e-43 179.9 628 37.9
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.1e-42 179.1 689 34.4
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.8e-42 178.3 664 38.4
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 2.4e-42 177.9 552 40.8
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 2.4e-42 177.9 764 32.9
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 3.1e-42 177.6 710 36.6
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 2.0e-41 174.9 562 39.5
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 2.0e-41 174.9 562 39.5
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 2.6e-41 174.5 560 38.2
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 4.5e-41 173.7 677 34.3
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 7.6e-41 172.9 572 38.3
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.0e-40 172.6 648 36.4
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 2.2e-40 171.4 712 40.2
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.9e-40 171.0 462 35.5
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 3.8e-40 170.6 707 33.0
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 8.4e-40 169.5 683 36.9
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 8.4e-40 169.5 683 35.7
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.1e-38 164.9 689 38.0
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.7e-38 164.5 731 30.8
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.8e-37 161.8 334 42.8
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 2.3e-37 161.4 574 40.4
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.9e-37 160.6 610 39.8
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 4.3e-36 157.1 600 32.5
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 7.4e-36 156.4 560 43.9
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.1e-35 154.8 648 34.3
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 3.7e-35 154.1 728 40.2
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 4.8e-35 153.7 632 32.1
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 4.8e-35 153.7 744 34.7
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.1e-34 152.5 590 35.1
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 2.4e-34 151.4 440 38.0
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 5.3e-34 150.2 621 36.9
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 7.6e-33 146.4 736 35.6
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.0e-32 146.0 604 33.3
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 1.7e-32 145.2 644 31.5
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 9.3e-31 139.4 793 35.7
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.6e-30 138.7 693 29.1
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 3.6e-30 137.5 623 36.0
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.0e-29 136.0 620 30.5
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 6.7e-29 133.3 682 32.6
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 9.7e-28 129.4 609 30.9
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 2.2e-27 128.3 649 29.0
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 3.7e-27 127.5 640 30.9
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 4.8e-27 127.1 593 30.2
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.1e-26 125.9 623 31.6
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.8e-26 125.2 609 30.4
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 3.1e-26 124.4 321 38.6
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 9.1e-26 122.9 517 29.6
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.0e-25 121.7 678 30.5
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.4e-25 120.9 277 39.4
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.4e-23 115.5 637 30.3
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 3.2e-23 114.4 633 29.7
Aa31LG1G18520 Aethionema arabicum HOM05D003795 ORTHO05D026452 7.2e-23 113.2 118 66.1
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 7.2e-23 113.2 662 30.1
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.6e-22 112.1 441 35.4
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 6.1e-22 110.2 397 47.6
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.4e-21 109.0 298 33.9
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.1e-20 105.9 530 28.5
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.5e-20 105.5 649 28.5
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.8e-19 101.3 292 33.2
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.3e-18 97.1 660 34.2
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 9.1e-18 96.3 61 85.2
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 5.0e-16 90.5 421 39.7
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.5e-15 88.2 229 39.3
BraA05t20886Z Brassica rapa HOM05D003089 ORTHO05D001766 7.2e-15 86.7 181 60.2
BcaB04g20778 Brassica carinata HOM05D011073 ORTHO05D013800 6.1e-14 83.6 170 46.5
A05p19800 Brassica napus HOM05D011073 ORTHO05D013800 6.1e-14 83.6 236 53.0
BraA06t25267Z Brassica rapa HOM05D003795 ORTHO05D026452 3.9e-13 80.9 81 63.0
C03p77490 Brassica napus HOM05D011073 ORTHO05D013800 6.7e-13 80.1 81 69.1
BraA02t06724Z Brassica rapa HOM05D011073 ORTHO05D013800 6.7e-13 80.1 81 69.1
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 8.8e-13 79.7 75 64.0
A06p21800 Brassica napus HOM05D003795 ORTHO05D026452 2.6e-12 78.2 81 61.7
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 7.4e-12 76.6 380 40.5
C03p10570 Brassica napus HOM05D011073 ORTHO05D013800 1.7e-11 75.5 81 66.7
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.2e-11 75.1 672 24.7
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 2.8e-11 74.7 505 37.2
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.7e-11 74.3 743 24.9
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.8e-10 72.0 182 35.7
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 2.4e-10 71.6 104 45.2
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 4.1e-10 70.9 144 42.4
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 4.1e-10 70.9 80 57.5
BolC4t22963H Brassica oleracea HOM05D011073 ORTHO05D013800 9.1e-10 69.7 76 65.8
BolC9t54509H Brassica oleracea HOM05D011073 ORTHO05D013800 5.9e-09 67.0 76 64.5
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.8e-08 64.3 152 38.2
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 8.5e-08 63.2 121 43.0
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.5e-07 62.4 274 29.2
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.2e-07 60.1 201 34.8
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.6e-06 58.9 67 59.7
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 3.6e-06 57.8 91 45.1
BcaC04g22717 Brassica carinata HOM05D011073 ORTHO05D013800 8.0e-06 56.6 52 65.4


User provided reference genes

Program Settings