Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G45790 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 0.0e+00 1567.4 817 100.0
AL1G53160 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 0.0e+00 1417.5 867 87.7
AL3G15920 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 0.0e+00 1407.5 867 87.1
AT1G20400 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 1.0e-114 418.7 797 36.3
AL3G49830 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 3.0e-114 417.2 868 36.6
AL9U10150 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 4.3e-113 413.3 884 36.1
AT4G20700 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 4.6e-54 217.2 389 38.3
AT4G20520 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 3.3e-44 184.5 330 38.5
Carub.0005s0210 Capsella rubella HOM05D010629 ORTHO05D005680 4.7e-43 180.6 659 28.2
AT1G32010 Arabidopsis thaliana HOM05D010629 ORTHO05D019745 8.1e-43 179.9 766 26.2
AT2G15420 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 2.6e-41 174.9 516 28.1
Carub.0007s2123 Capsella rubella HOM05D010629 ORTHO05D005680 1.0e-37 162.9 593 28.5
AT4G20650 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 3.4e-33 147.9 263 38.8
Sp4g04860 Schrenkiella parvula HOM05D010772 ORTHO05D005680 4.9e-32 144.1 648 25.3
AT5G38190 Arabidopsis thaliana HOM05D034490 ORTHO05D019745 2.7e-30 138.3 756 25.4
Carub.0006s0276 Capsella rubella HOM05D010629 ORTHO05D005680 2.7e-30 138.3 185 41.6
Carub.0002s1244 Capsella rubella HOM05D010629 ORTHO05D005680 4.6e-30 137.5 507 28.2
Carub.0007s3050 Capsella rubella HOM05D010629 ORTHO05D005680 1.0e-29 136.3 570 23.5
Carub.0004s1088 Capsella rubella HOM05D010629 ORTHO05D005680 1.7e-29 135.6 592 26.4
AT3G42060 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 2.3e-29 135.2 468 28.6
Carub.0005s0837 Capsella rubella HOM05D010629 ORTHO05D005680 2.3e-29 135.2 605 26.6
AL3G43600 Arabidopsis lyrata HOM05D010629 ORTHO05D005680 3.0e-29 134.8 273 34.1
Carub.0072s0001 Capsella rubella HOM05D010629 ORTHO05D005680 3.0e-29 134.8 601 24.3
Carub.0353s0001 Capsella rubella HOM05D010629 ORTHO05D005680 1.5e-28 132.5 542 26.6
AT4G20535 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 1.1e-26 126.3 187 42.2
AT4G20545 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 1.1e-26 126.3 187 42.2
AT4G20555 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 1.1e-26 126.3 187 42.2
AT4G20565 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 1.1e-26 126.3 187 42.2
AT4G20575 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 1.1e-26 126.3 187 42.2
Carub.0003s2807 Capsella rubella HOM05D010629 ORTHO05D005680 1.2e-22 112.8 303 28.7
Carub.0108s0001 Capsella rubella HOM05D016834 ORTHO05D016863 1.6e-22 112.5 618 23.9
Carub.0003s2394 Capsella rubella HOM05D016834 ORTHO05D016863 2.1e-22 112.1 624 23.9
AT4G20707 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 1.3e-21 109.4 255 32.9
Sp4g11160 Schrenkiella parvula HOM05D010772 ORTHO05D005680 1.7e-21 109.0 587 24.7
Carub.0002s1012 Capsella rubella HOM05D010629 ORTHO05D005680 1.9e-20 105.5 187 35.3
Sp7g05200 Schrenkiella parvula HOM05D002078 ORTHO05D005680 9.6e-20 103.2 278 26.3
Carub.0008s1221 Capsella rubella HOM05D016834 ORTHO05D016863 1.6e-19 102.4 619 22.6
Sp7g11540 Schrenkiella parvula HOM05D010529 ORTHO05D012528 4.0e-18 97.8 168 35.7
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 5.3e-18 97.4 590 25.1
BcaC04g21481 Brassica carinata HOM05D009676 ORTHO05D014479 4.5e-17 94.4 169 36.1
BolC8t48644H Brassica oleracea HOM05D002078 ORTHO05D005680 7.6e-17 93.6 174 31.6
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.7e-16 92.4 202 32.2
Carub.0003s2886 Capsella rubella HOM05D016834 ORTHO05D016863 3.8e-16 91.3 622 23.2
Carub.0009s0003 Capsella rubella HOM05D016834 ORTHO05D016863 4.9e-16 90.9 625 23.2
BcaC06g34587 Brassica carinata HOM05D002078 ORTHO05D005680 1.4e-15 89.4 161 36.6
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 9.3e-15 86.7 209 27.3
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.6e-14 85.9 209 26.8
BcaB05g24965 Brassica carinata HOM05D002078 ORTHO05D005680 1.6e-14 85.9 347 28.0
Carub.0006s2612 Capsella rubella HOM05D016834 ORTHO05D016863 1.6e-14 85.9 183 30.6
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.1e-14 85.5 209 27.8
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.1e-14 85.5 209 27.3
Carub.0007s3091 Capsella rubella HOM05D016834 ORTHO05D016863 2.1e-14 85.5 618 22.7
BolC5t33453H Brassica oleracea HOM05D003421 ORTHO05D003268 2.7e-14 85.1 218 28.4
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.5e-14 84.7 209 26.8
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.6e-14 84.3 209 26.3
BcaC05g27552 Brassica carinata HOM05D002078 ORTHO05D005680 4.6e-14 84.3 153 34.6
BcaB06g27178 Brassica carinata HOM05D002078 ORTHO05D005680 6.0e-14 84.0 573 24.6
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 7.9e-14 83.6 209 26.3
SpUn0003_0260 Schrenkiella parvula HOM05D010529 ORTHO05D012528 1.0e-13 83.2 140 37.1
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-13 82.4 209 26.3
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-13 82.4 209 26.8
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-13 82.4 180 27.2
Carub.0073s0002 Capsella rubella HOM05D016834 ORTHO05D016863 2.3e-13 82.0 465 23.0
BcaC05g27328 Brassica carinata HOM05D002078 ORTHO05D005680 3.0e-13 81.6 232 31.5
Sp5g17660 Schrenkiella parvula HOM05D010529 ORTHO05D012528 3.0e-13 81.6 131 36.6
BcaC01g04584 Brassica carinata HOM05D002078 ORTHO05D005680 3.9e-13 81.3 176 30.1
BcaC01g02138 Brassica carinata HOM05D002078 ORTHO05D005680 5.1e-13 80.9 163 32.5
BcaC02g10933 Brassica carinata HOM05D002078 ORTHO05D005680 6.7e-13 80.5 132 35.6
BcaC08g43200 Brassica carinata HOM05D002078 ORTHO05D005680 6.7e-13 80.5 183 29.0
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 8.7e-13 80.1 257 25.7
BcaC03g16426 Brassica carinata HOM05D002078 ORTHO05D005680 8.7e-13 80.1 127 35.4
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.1e-12 79.7 179 26.8
BcaB07g33910 Brassica carinata HOM05D002078 ORTHO05D005680 1.1e-12 79.7 184 30.4
BcaC02g10377 Brassica carinata HOM05D002078 ORTHO05D005680 1.1e-12 79.7 132 34.1
BcaC06g35846 Brassica carinata HOM05D002078 ORTHO05D005680 1.1e-12 79.7 302 28.5
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.5e-12 79.3 258 26.7
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.5e-12 79.3 188 26.1
BraA01t02722Z Brassica rapa HOM05D003421 ORTHO05D003268 1.5e-12 79.3 198 26.3
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.9e-12 79.0 331 23.9
BcaB03g14738 Brassica carinata HOM05D002078 ORTHO05D005680 1.9e-12 79.0 175 32.0
BcaC05g28690 Brassica carinata HOM05D002078 ORTHO05D005680 2.5e-12 78.6 259 28.2
BolC3t19281H Brassica oleracea HOM05D003421 ORTHO05D003268 2.5e-12 78.6 215 27.0
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.3e-12 78.2 165 27.3
BcaC05g27553 Brassica carinata HOM05D002078 ORTHO05D005680 3.3e-12 78.2 135 34.1
BcaC07g38368 Brassica carinata HOM05D002078 ORTHO05D005680 3.3e-12 78.2 127 37.0
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.6e-12 77.4 257 24.9
BcaC03g16774 Brassica carinata HOM05D002078 ORTHO05D005680 5.6e-12 77.4 159 32.7
Thhalv10023163m.g Eutrema salsugineum HOM05D010629 ORTHO05D016863 5.6e-12 77.4 87 47.1
BcaC06g35883 Brassica carinata HOM05D002078 ORTHO05D005680 7.4e-12 77.0 170 31.2
BcaC07g37378 Brassica carinata HOM05D002078 ORTHO05D005680 7.4e-12 77.0 127 33.9
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 9.6e-12 76.6 257 25.3
BcaC01g03754 Brassica carinata HOM05D002078 ORTHO05D005680 9.6e-12 76.6 127 33.9
BcaC04g20964 Brassica carinata HOM05D003421 ORTHO05D003268 1.3e-11 76.3 180 28.9
BcaC02g09312 Brassica carinata HOM05D002078 ORTHO05D005680 1.6e-11 75.9 176 28.4
BcaC02g10452 Brassica carinata HOM05D002078 ORTHO05D005680 1.6e-11 75.9 127 34.6
BcaC05g27420 Brassica carinata HOM05D002078 ORTHO05D005680 1.6e-11 75.9 226 27.9
BcaC02g10131 Brassica carinata HOM05D002078 ORTHO05D005680 2.1e-11 75.5 131 33.6
BcaC09g49433 Brassica carinata HOM05D002078 ORTHO05D005680 2.1e-11 75.5 119 35.3
BcaC02g11611 Brassica carinata HOM05D002078 ORTHO05D005680 2.8e-11 75.1 127 36.2
BcaC08g44804 Brassica carinata HOM05D002078 ORTHO05D005680 3.6e-11 74.7 217 30.0
BcaC02g10668 Brassica carinata HOM05D002078 ORTHO05D005680 6.2e-11 73.9 222 28.4
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.1e-10 73.2 163 27.0
BcaC02g09798 Brassica carinata HOM05D002078 ORTHO05D005680 1.1e-10 73.2 119 35.3
BcaC03g14208 Brassica carinata HOM05D002078 ORTHO05D005680 1.1e-10 73.2 272 27.6
BcaC07g37462 Brassica carinata HOM05D002078 ORTHO05D005680 1.4e-10 72.8 119 35.3
BcaC09g49293 Brassica carinata HOM05D002078 ORTHO05D005680 1.8e-10 72.4 169 29.0
Sp6g10630 Schrenkiella parvula HOM05D010529 ORTHO05D012528 1.8e-10 72.4 113 38.1
BolC4t23765H Brassica oleracea HOM05D003421 ORTHO05D003268 2.4e-10 72.0 202 26.7
BcaB08g35469 Brassica carinata HOM05D009676 ORTHO05D005680 4.0e-10 71.2 95 41.1
BcaC05g26934 Brassica carinata HOM05D002078 ORTHO05D005680 4.0e-10 71.2 129 34.1
Sp6g11050 Schrenkiella parvula HOM05D010529 ORTHO05D012528 4.0e-10 71.2 518 22.8
BcaC03g16104 Brassica carinata HOM05D002078 ORTHO05D005680 5.3e-10 70.9 170 30.0
BolC2t08631H Brassica oleracea HOM05D009676 ORTHO05D014479 5.3e-10 70.9 105 39.0
BcaC05g27300 Brassica carinata HOM05D002078 ORTHO05D005680 6.9e-10 70.5 132 33.3
BolC2t09439H Brassica oleracea HOM05D003421 ORTHO05D003268 6.9e-10 70.5 211 25.1
BcaC04g21351 Brassica carinata HOM05D002078 ORTHO05D005680 9.0e-10 70.1 271 26.2
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.2e-09 69.7 172 29.7
BcaB03g15586 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-09 69.7 127 33.9
BcaC04g20801 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-09 69.7 125 32.8
BolC1t03978H Brassica oleracea HOM05D003421 ORTHO05D003268 1.2e-09 69.7 183 27.9
BcaC03g16343 Brassica carinata HOM05D002078 ORTHO05D005680 1.5e-09 69.3 127 30.7
BcaC04g19675 Brassica carinata HOM05D002078 ORTHO05D005680 1.5e-09 69.3 125 32.0
BcaC02g10884 Brassica carinata HOM05D002078 ORTHO05D005680 2.0e-09 68.9 127 31.5
C08p07900 Brassica napus HOM05D002078 ORTHO05D005680 2.0e-09 68.9 127 29.9
Sp3g29710 Schrenkiella parvula HOM05D010772 ORTHO05D005680 2.0e-09 68.9 597 21.4
BcaC05g27779 Brassica carinata HOM05D002078 ORTHO05D005680 2.6e-09 68.6 163 35.0
BcaC08g43339 Brassica carinata HOM05D002078 ORTHO05D005680 2.6e-09 68.6 172 34.9
BcaC09g50043 Brassica carinata HOM05D002078 ORTHO05D005680 2.6e-09 68.6 127 32.3
BcaC03g17328 Brassica carinata HOM05D002078 ORTHO05D005680 3.4e-09 68.2 202 30.7
BcaC05g26653 Brassica carinata HOM05D009676 ORTHO05D005680 3.4e-09 68.2 95 41.1
BcaC06g35850 Brassica carinata HOM05D002078 ORTHO05D005680 3.4e-09 68.2 127 32.3
BolC8t48271H Brassica oleracea HOM05D003421 ORTHO05D003268 3.4e-09 68.2 164 29.3
BolC8t47641H Brassica oleracea HOM05D002078 ORTHO05D005680 4.5e-09 67.8 127 29.1
BcaC01g01023 Brassica carinata HOM05D002078 ORTHO05D005680 5.8e-09 67.4 119 32.8
Sp4g04760 Schrenkiella parvula HOM05D010772 ORTHO05D005680 5.8e-09 67.4 105 35.2
BcaC03g17686 Brassica carinata HOM05D002078 ORTHO05D005680 7.6e-09 67.0 271 23.2
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 7.6e-09 67.0 157 27.4
BcaC02g09148 Brassica carinata HOM05D002078 ORTHO05D005680 9.9e-09 66.6 125 32.0
BcaC03g16508 Brassica carinata HOM05D002078 ORTHO05D005680 1.3e-08 66.2 119 35.3
BolC8t47514H Brassica oleracea HOM05D003421 ORTHO05D003268 1.7e-08 65.9 165 27.3
A08p08190 Brassica napus HOM05D008596 ORTHO05D003268 2.2e-08 65.5 200 25.5
BcaC06g36507 Brassica carinata HOM05D006121 ORTHO05D009559 6.4e-08 63.9 481 23.5
AT1G36100 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.4e-07 62.8 84 38.1
BcaC08g42839 Brassica carinata HOM05D002078 ORTHO05D005680 1.4e-07 62.8 197 27.9
Sp6g07550 Schrenkiella parvula HOM05D010772 ORTHO05D005680 1.4e-07 62.8 107 34.6
BcaC07g37480 Brassica carinata HOM05D007986 ORTHO05D003268 1.9e-07 62.4 116 26.7
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.4e-07 62.0 123 32.5
BcaC07g37412 Brassica carinata HOM05D002078 ORTHO05D005680 2.4e-07 62.0 125 33.6
A05p19660 Brassica napus HOM05D008596 ORTHO05D003268 4.2e-07 61.2 179 26.3
BcaC07g37211 Brassica carinata HOM05D002078 ORTHO05D005680 9.3e-07 60.1 81 40.7
BcaC08g44035 Brassica carinata HOM05D002078 ORTHO05D005680 9.3e-07 60.1 126 30.2
BcaC05g26571 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-06 59.7 127 30.7
A01p26930 Brassica napus HOM05D008596 ORTHO05D003268 1.6e-06 59.3 163 24.5
BcaC08g43484 Brassica carinata HOM05D002078 ORTHO05D005680 2.1e-06 58.9 318 25.2
BcaC08g43500 Brassica carinata HOM05D002078 ORTHO05D005680 2.1e-06 58.9 164 32.3
BolC5t31433H Brassica oleracea HOM05D010358 ORTHO05D021654 2.1e-06 58.9 283 25.1
AT4G06688 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.7e-06 58.5 88 36.4
BcaC03g15357 Brassica carinata HOM05D002078 ORTHO05D005680 2.7e-06 58.5 79 40.5
CARHR259430 Cardamine hirsuta HOM05D010629 ORTHO05D005680 2.7e-06 58.5 70 38.6
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.6e-06 57.8 726 21.3
AT3G43148 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 6.0e-06 57.4 84 34.5
BcaC03g17136 Brassica carinata HOM05D002078 ORTHO05D005680 6.0e-06 57.4 270 26.7
BolC9t56870H Brassica oleracea HOM05D003421 ORTHO05D003268 6.0e-06 57.4 162 25.9
CARHR184520 Cardamine hirsuta HOM05D008458 ORTHO05D010628 6.0e-06 57.4 154 23.4
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 7.9e-06 57.0 260 24.2


User provided reference genes

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