Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 0.0e+00 1870.1 1098 100.0
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 0.0e+00 1205.3 1159 69.6
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 0.0e+00 1127.1 1129 68.8
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.6e-267 926.8 1123 60.1
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 6.9e-207 725.3 1123 53.3
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 1.2e-150 538.5 1124 40.6
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.7e-133 481.5 1234 38.7
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 3.5e-118 430.6 1153 36.4
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 6.2e-115 419.9 1158 36.0
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 3.3e-108 397.5 1154 35.6
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 8.1e-107 392.9 1153 34.8
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 1.1e-106 392.5 1155 35.1
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 1.8e-106 391.7 1156 35.0
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 2.5e-63 248.4 1142 29.0
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 5.2e-53 214.2 972 34.7
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 9.8e-52 209.9 1266 28.0
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 1.7e-51 209.1 972 34.3
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.8e-51 208.4 394 40.1
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 8.3e-51 206.8 972 34.2
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 5.4e-50 204.1 944 31.2
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 2.2e-27 129.0 802 26.6
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.1e-22 112.5 298 34.6
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 5.2e-21 107.8 336 33.0
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.2e-20 106.7 149 43.0
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.1e-18 100.1 236 34.3
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 3.2e-18 98.6 247 34.4
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.1e-18 97.4 289 31.1
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 2.1e-17 95.9 99 48.5
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 3.5e-17 95.1 124 40.3
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 3.5e-17 95.1 254 33.1
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 6.0e-17 94.4 86 52.3
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 6.0e-17 94.4 132 37.9
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 7.8e-17 94.0 83 53.0
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 7.8e-17 94.0 88 52.3
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.3e-16 92.4 106 44.3
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.3e-16 92.4 83 51.8
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.3e-16 92.4 102 44.1
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.0e-16 92.0 96 44.8
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.0e-16 92.0 106 44.3
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 3.0e-16 92.0 81 55.6
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 3.9e-16 91.7 83 54.2
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.1e-16 91.3 345 31.0
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 5.1e-16 91.3 90 48.9
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 6.6e-16 90.9 87 47.1
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 8.6e-16 90.5 88 47.7
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 8.6e-16 90.5 86 52.3
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.1e-15 90.1 91 45.1
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 1.5e-15 89.7 81 51.9
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 1.5e-15 89.7 84 42.9
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.9e-15 89.4 125 39.2
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 1.9e-15 89.4 81 46.9
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.5e-15 89.0 127 39.4
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 2.5e-15 89.0 176 33.0
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 3.3e-15 88.6 400 27.0
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 4.3e-15 88.2 80 51.2
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 7.3e-15 87.4 96 44.8
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 7.3e-15 87.4 83 48.2
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.2e-14 86.7 112 41.1
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.6e-14 86.3 138 35.5
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 1.6e-14 86.3 81 53.1
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 2.1e-14 85.9 141 36.9
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 2.1e-14 85.9 597 22.9
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 2.1e-14 85.9 98 39.8
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.8e-14 85.5 428 25.0
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.6e-14 85.1 146 36.3
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 3.6e-14 85.1 87 43.7
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 3.6e-14 85.1 93 40.9
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 4.7e-14 84.7 177 33.9
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 4.7e-14 84.7 81 46.9
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 4.7e-14 84.7 93 41.9
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 8.1e-14 84.0 87 43.7
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 2.4e-13 82.4 119 37.0
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 5.2e-13 81.3 90 43.3
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 5.2e-13 81.3 799 22.9
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 8.9e-13 80.5 111 33.3
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 8.9e-13 80.5 85 45.9
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 1.2e-12 80.1 128 32.8
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 4.4e-12 78.2 80 42.5
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 5.8e-12 77.8 84 46.4
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 5.8e-12 77.8 586 23.7
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 5.8e-12 77.8 84 46.4
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 1.3e-11 76.6 118 39.0
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 1.3e-11 76.6 118 39.0
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 1.3e-11 76.6 270 26.3
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.7e-11 76.3 166 31.9
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 1.7e-11 76.3 171 31.0
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 2.2e-11 75.9 442 26.2
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 2.9e-11 75.5 111 34.2
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 6.4e-11 74.3 799 22.2
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 6.4e-11 74.3 79 41.8
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 1.1e-10 73.6 575 24.0
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.1e-10 73.6 742 22.9
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.4e-10 73.2 57 56.1
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.4e-10 73.2 80 41.2
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 1.9e-10 72.8 78 39.7
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.4e-10 72.4 83 41.0
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.4e-10 72.4 92 37.0
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 4.2e-10 71.6 87 35.6
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 4.2e-10 71.6 241 26.1
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 4.2e-10 71.6 81 38.3
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.2e-10 71.6 127 32.3
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 5.4e-10 71.2 316 26.6
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 5.4e-10 71.2 81 38.3
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 9.2e-10 70.5 98 41.8
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 9.2e-10 70.5 80 40.0
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 1.2e-09 70.1 94 37.2
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 1.2e-09 70.1 151 31.8
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 1.2e-09 70.1 81 43.2
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.6e-09 69.7 185 30.8
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.6e-09 69.7 98 41.8
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.6e-09 69.7 98 41.8
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 1.6e-09 69.7 174 28.7
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 2.1e-09 69.3 175 30.3
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 2.7e-09 68.9 81 39.5
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 3.5e-09 68.6 81 40.7
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 4.6e-09 68.2 424 23.6
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 6.0e-09 67.8 80 36.2
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 6.0e-09 67.8 98 37.8
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 6.0e-09 67.8 299 24.4
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 7.8e-09 67.4 151 30.5
A07p05110 Brassica napus HOM05D008497 ORTHO05D003355 7.8e-09 67.4 277 35.0
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 7.8e-09 67.4 97 36.1
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 7.8e-09 67.4 80 41.2
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 7.8e-09 67.4 88 37.5
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 1.0e-08 67.0 93 35.5
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 1.0e-08 67.0 227 23.3
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 1.0e-08 67.0 86 34.9
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 1.0e-08 67.0 81 40.7
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 1.3e-08 66.6 102 35.3
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.3e-08 66.6 98 39.8
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 1.3e-08 66.6 98 37.8
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.7e-08 66.2 166 28.3
Aa31sc26G90 Aethionema arabicum HOM05D005863 ORTHO05D003355 1.7e-08 66.2 150 30.0
BcaC04g22710 Brassica carinata HOM05D008497 ORTHO05D027096 1.7e-08 66.2 118 47.5
BolC9t54519H Brassica oleracea HOM05D008497 ORTHO05D027096 1.7e-08 66.2 118 47.5
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 1.7e-08 66.2 189 25.9
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.7e-08 66.2 189 29.1
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.7e-08 66.2 172 27.3
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 2.3e-08 65.9 163 30.7
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 2.3e-08 65.9 614 21.7
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 2.3e-08 65.9 88 36.4
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 3.0e-08 65.5 86 39.5
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 3.0e-08 65.5 81 39.5
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 3.0e-08 65.5 80 40.0
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 5.1e-08 64.7 244 24.6
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 6.6e-08 64.3 81 39.5
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 8.7e-08 63.9 93 33.3
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 8.7e-08 63.9 81 38.3
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 8.7e-08 63.9 75 42.7
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 8.7e-08 63.9 75 42.7
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 1.1e-07 63.5 67 44.8
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 1.1e-07 63.5 67 44.8
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.1e-07 63.5 81 35.8
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.1e-07 63.5 81 35.8
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 1.1e-07 63.5 150 30.7
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 1.5e-07 63.2 81 37.0
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 1.5e-07 63.2 135 30.4
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.5e-07 63.2 81 39.5
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.5e-07 63.2 71 43.7
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.9e-07 62.8 82 40.2
Sp7g05240 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.9e-07 62.8 59 62.7
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 2.5e-07 62.4 117 33.3
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 2.5e-07 62.4 81 35.8
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 3.3e-07 62.0 760 22.2
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 4.3e-07 61.6 470 22.3
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 4.3e-07 61.6 82 39.0
CARHR174360 Cardamine hirsuta HOM05D005863 ORTHO05D003355 7.3e-07 60.8 60 50.0
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 7.3e-07 60.8 162 29.0
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 7.3e-07 60.8 178 22.5
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 9.6e-07 60.5 84 32.1
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.3e-06 60.1 124 30.6
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 1.6e-06 59.7 89 34.8
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 1.6e-06 59.7 89 34.8
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 2.8e-06 58.9 167 26.3
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 3.6e-06 58.5 77 40.3
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 3.6e-06 58.5 81 35.8
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 4.8e-06 58.2 87 35.6
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 4.8e-06 58.2 199 26.6
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 4.8e-06 58.2 77 35.1


User provided reference genes

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