Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 3.5e-214 748.0 384 100.0
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 7.7e-137 491.1 383 73.4
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.0e-136 490.7 383 72.8
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 8.5e-136 487.6 383 73.1
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 2.7e-134 482.6 384 71.1
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 7.9e-134 481.1 383 71.0
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 1.5e-132 476.9 386 69.7
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 8.2e-131 471.1 383 68.9
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 1.4e-130 470.3 383 68.9
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 3.1e-130 469.2 383 69.2
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 2.6e-129 466.1 384 68.8
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 3.5e-129 465.7 383 70.0
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 3.6e-126 455.7 395 66.3
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 7.7e-121 438.0 395 62.3
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.2e-116 424.1 399 58.9
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 3.4e-108 396.0 394 57.6
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 3.1e-106 389.4 394 56.9
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 5.4e-106 388.7 393 57.3
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 7.0e-106 388.3 394 56.9
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 9.2e-106 387.9 394 56.1
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 1.2e-105 387.5 395 56.7
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 1.6e-105 387.1 400 56.0
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 2.7e-105 386.3 394 55.6
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 3.5e-105 386.0 395 55.4
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 4.5e-105 385.6 395 55.7
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 4.5e-105 385.6 394 56.1
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 2.9e-104 382.9 394 55.3
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 5.0e-104 382.1 395 54.9
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 6.6e-104 381.7 395 55.2
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 6.6e-104 381.7 395 56.2
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 6.6e-104 381.7 394 56.1
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 1.1e-103 380.9 395 54.7
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 1.1e-103 380.9 394 55.3
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 2.5e-103 379.8 394 54.8
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 3.3e-103 379.4 396 55.1
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 7.3e-103 378.3 394 55.3
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 2.8e-102 376.3 395 55.2
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 6.1e-102 375.2 393 56.0
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 6.1e-102 375.2 398 55.3
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 2.3e-101 373.2 395 54.9
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 3.0e-101 372.9 396 55.1
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.0e-101 372.9 396 55.1
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 4.0e-101 372.5 394 56.1
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 4.0e-101 372.5 395 56.2
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 6.8e-101 371.7 395 54.4
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 8.9e-101 371.3 395 53.4
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 8.9e-101 371.3 396 55.1
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 1.2e-100 370.9 395 53.4
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.2e-100 370.9 395 53.9
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.5e-100 370.5 395 55.2
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 2.0e-100 370.2 396 54.8
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 4.4e-100 369.0 395 54.4
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 7.5e-100 368.2 387 55.3
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 7.5e-100 368.2 395 53.7
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 9.8e-100 367.9 383 53.8
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.3e-99 367.5 376 53.7
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.2e-99 366.7 394 54.3
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 2.9e-99 366.3 394 54.3
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 4.9e-99 365.5 395 53.4
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 6.4e-99 365.2 368 56.2
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 8.3e-99 364.8 395 54.7
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.1e-98 364.4 396 54.3
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 1.1e-98 364.4 396 53.5
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.8e-98 363.6 394 54.6
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 1.8e-98 363.6 395 53.4
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 2.4e-98 363.2 397 53.4
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.2e-98 362.8 396 54.3
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.2e-98 362.8 396 54.3
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 4.1e-98 362.5 401 52.6
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 5.4e-98 362.1 395 54.2
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 1.2e-97 360.9 395 53.4
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 1.6e-97 360.5 395 53.4
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 2.7e-97 359.8 394 53.0
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 4.6e-97 359.0 395 52.9
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 7.8e-97 358.2 395 52.7
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 1.3e-96 357.5 394 52.8
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 3.9e-96 355.9 395 52.4
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 5.0e-96 355.5 397 50.9
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 6.6e-96 355.1 396 52.3
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 8.6e-96 354.8 398 54.0
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 2.5e-95 353.2 394 52.3
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 3.3e-95 352.8 397 50.6
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 3.3e-95 352.8 394 52.8
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 1.2e-94 350.9 396 53.0
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 2.1e-94 350.1 397 50.6
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 2.8e-94 349.7 396 52.5
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 3.6e-94 349.4 397 49.9
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 5.2e-93 345.5 395 51.6
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 5.8e-92 342.0 394 50.5
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 1.1e-90 337.8 397 50.9
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 1.9e-90 337.0 395 50.4
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 3.5e-89 332.8 395 49.6
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 3.0e-88 329.7 368 53.3
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 5.0e-88 328.9 395 50.4
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 1.1e-87 327.8 369 52.0
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 2.3e-85 320.1 336 55.1
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 3.1e-85 319.7 369 51.8
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 3.1e-85 319.7 395 50.1
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.4e-76 289.7 407 43.7
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 7.6e-68 261.9 345 46.4
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.4e-66 255.8 314 50.6
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 4.6e-65 252.7 314 51.9
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 2.5e-63 246.9 312 47.8
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 9.9e-60 235.0 405 38.0
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 4.2e-58 229.6 270 51.5
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 3.6e-54 216.5 125 88.0
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 3.6e-54 216.5 259 50.6
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 1.1e-53 214.9 399 38.3
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 6.4e-51 205.7 204 56.9
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.7e-49 200.3 381 39.4
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 2.8e-46 190.3 136 71.3
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 3.7e-46 189.9 136 70.6
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 5.3e-45 186.0 136 70.6
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 5.8e-44 182.6 148 62.2
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 1.7e-43 181.0 136 68.4
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.9e-42 177.6 355 33.8
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 5.5e-42 176.0 118 73.7
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 9.3e-42 175.3 397 33.2
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 1.6e-41 174.5 427 32.6
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 5.1e-40 169.5 137 65.0
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 1.1e-39 168.3 137 64.2
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.2e-34 150.2 164 47.0
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 2.2e-27 127.5 153 47.7
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 3.1e-21 107.1 378 27.5
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 1.2e-20 105.1 95 57.9
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 1.5e-20 104.8 94 63.8
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 1.1e-13 82.0 364 26.1
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 1.2e-12 78.6 376 22.9
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.9e-11 73.9 190 30.0
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 6.5e-11 72.8 178 27.5
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.5e-10 69.7 74 51.4
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 1.0e-08 65.5 364 23.6
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 3.0e-08 63.9 59 61.0
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 6.7e-08 62.8 55 54.5


User provided reference genes

Program Settings