Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 3961.8 2106 100.0
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 2866.3 2218 70.6
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 2651.3 2137 68.1
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 2635.1 1657 84.1
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2063.5 2172 54.8
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2043.9 2173 54.5
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 2036.5 2174 54.6
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 2030.0 2178 55.5
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2001.5 2172 54.9
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 1991.5 2184 53.5
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 1949.9 2201 53.2
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 1948.7 2159 53.3
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 1929.8 2179 52.5
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 1916.7 2190 52.4
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 1911.0 2173 53.4
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1906.3 2175 51.9
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 1897.9 2180 52.2
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 1896.7 2172 53.4
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1895.6 2164 53.3
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1890.5 2165 52.4
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 1888.2 2160 52.8
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1884.4 2168 51.0
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1880.5 2175 51.6
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1871.7 2180 52.0
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1870.9 2185 51.9
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 1865.1 2199 50.9
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 1854.3 2171 51.4
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 1853.6 2164 52.2
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 1853.2 2176 51.7
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 1845.1 2172 51.2
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 1841.2 2181 50.4
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1836.2 2257 50.2
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 1831.2 2169 50.9
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 1811.6 2178 50.9
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 1801.6 2022 51.3
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 1798.1 2184 49.5
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 1785.0 2173 50.5
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 1783.5 2190 48.6
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 1781.1 2189 49.7
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 1760.7 2203 49.3
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 1760.0 2181 49.6
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1758.8 2165 48.8
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 1753.0 2187 48.9
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1749.2 2000 51.0
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 1747.3 2165 49.6
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 1744.9 2177 48.2
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1734.9 2174 48.3
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 1724.1 2171 48.3
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1721.4 2152 50.0
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 1704.9 2165 48.8
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 1695.6 2261 47.8
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1661.0 2140 47.8
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1641.3 2124 46.4
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 1640.2 2109 48.6
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 1637.5 1956 51.6
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1630.5 2160 46.6
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1615.5 2289 44.8
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1603.6 1881 51.4
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1601.3 1882 51.0
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 1598.9 2050 47.3
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1598.2 2124 45.1
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1551.2 2186 45.8
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1499.2 2131 45.0
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1494.6 1906 49.2
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1466.8 2086 44.5
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1449.1 2019 45.4
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1441.8 1679 51.1
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1435.6 1854 47.0
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1392.1 1974 45.5
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1375.5 1940 45.4
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1372.1 1973 42.3
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1359.7 1506 51.5
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1231.1 1750 44.3
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1216.1 1781 41.4
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 0.0e+00 1214.5 2295 37.9
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1172.1 1693 44.3
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1151.3 1123 56.6
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1150.2 1667 44.6
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1115.1 1555 45.9
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1105.9 1694 42.4
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 0.0e+00 1099.3 1921 37.1
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 7.8e-300 1035.0 2242 35.5
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 8.7e-275 951.8 1015 53.2
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 1.7e-257 894.4 1022 54.3
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 3.3e-250 870.2 1292 41.8
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 7.0e-248 862.4 1140 47.2
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 2.3e-243 847.4 959 51.5
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 4.0e-235 820.1 1123 46.9
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.3e-222 778.5 1380 35.9
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 9.5e-221 772.3 961 47.6
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 3.6e-204 717.2 2443 28.3
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 4.5e-170 604.0 1435 30.2
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 9.9e-170 602.8 634 54.1
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.6e-167 595.5 879 41.3
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 2.3e-166 591.7 507 64.3
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 5.5e-160 570.5 510 61.8
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 2.0e-114 419.1 415 57.1
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 1.0e-110 406.8 379 58.3
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 2.5e-96 359.0 542 48.2
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 2.8e-95 355.5 333 61.0
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 6.2e-95 354.4 220 78.6
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 1.4e-91 343.2 408 49.8
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 3.0e-89 335.5 407 48.6
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 3.9e-89 335.1 216 74.1
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.8e-86 326.2 343 52.5
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 7.1e-83 314.3 183 83.6
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 7.1e-83 314.3 230 68.3
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 3.7e-76 292.0 336 50.3
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 3.6e-55 222.2 128 82.8
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 9.0e-54 217.6 375 47.5
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 3.0e-49 202.6 547 31.8
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 7.4e-48 198.0 204 52.0
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 1.6e-47 196.8 362 41.7
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 1.8e-46 193.4 148 66.2
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 5.8e-45 188.3 287 44.3
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 5.1e-41 175.3 306 52.3
CSS0002002 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.6e-31 143.7 73 87.7
CSS0008041 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.6e-31 143.7 73 87.7
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 6.9e-30 138.3 120 60.0
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 6.9e-30 138.3 120 60.0
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.6e-26 127.1 95 63.2
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 2.1e-26 126.7 317 46.1
Actinidia21203 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.4e-25 124.0 64 85.9
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 3.8e-20 105.9 135 45.9
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 7.2e-19 101.7 219 33.3
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 9.4e-19 101.3 135 55.6
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 9.4e-19 101.3 132 50.0
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 1.6e-18 100.5 132 50.0
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.0e-17 97.8 135 43.0
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.4e-17 97.4 355 41.7
CSS0032650 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 8.8e-17 94.7 57 78.9
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 8.8e-17 94.7 85 58.8
Nitab4.5_0011076g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 2.6e-16 93.2 73 68.5
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 3.3e-16 92.8 184 40.2
Dinv00622 Davidia involucrata HOM05D004910 ORTHO05D006864 9.7e-16 91.3 79 60.8
ClCG00G006380 Citrullus lanatus HOM05D004910 ORTHO05D006864 4.1e-14 85.9 53 79.2
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 5.9e-13 82.0 65 60.0
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 1.3e-12 80.9 78 78.2
Phvul.010G039400 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 2.0e-08 67.0 60 63.3
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 2.6e-08 66.6 65 55.4
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 1.3e-07 64.3 55 56.4
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 1.1e-06 61.2 60 50.0
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 7.0e-06 58.5 49 63.3


User provided reference genes

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