Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 5.4e-259 897.1 450 100.0
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 5.5e-251 870.5 450 95.8
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 5.1e-241 837.4 439 92.7
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 2.2e-231 805.4 440 90.9
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 8.2e-223 776.9 458 86.0
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 8.2e-223 776.9 458 86.0
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 2.0e-221 772.3 456 85.7
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 2.6e-221 771.9 458 84.9
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 1.3e-220 769.6 456 85.3
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 1.3e-220 769.6 456 85.3
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 9.7e-216 753.4 451 81.6
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 1.2e-202 709.9 385 89.9
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 1.3e-188 663.3 350 92.3
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 2.3e-185 652.5 437 74.6
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 4.2e-158 562.0 430 64.0
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 1.9e-155 553.1 426 63.1
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 2.1e-154 549.7 430 62.8
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.1e-153 547.4 430 62.3
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.1e-153 545.8 430 62.6
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.8e-151 538.9 430 61.2
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 4.9e-151 538.5 453 61.4
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 1.4e-150 537.0 433 62.4
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 8.7e-148 527.7 438 60.7
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.1e-147 527.3 437 61.1
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 1.9e-147 526.6 484 57.2
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 4.3e-147 525.4 440 60.7
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 9.6e-147 524.2 435 60.2
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 2.8e-146 522.7 440 60.2
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 4.8e-146 521.9 432 60.9
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 2.4e-145 519.6 436 58.9
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 6.9e-145 518.1 428 57.2
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 7.6e-144 514.6 443 59.8
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 9.9e-144 514.2 419 61.6
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 1.7e-143 513.5 438 59.8
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.1e-142 510.8 429 58.0
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.4e-142 510.4 430 57.9
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 1.9e-142 510.0 432 58.8
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 4.2e-142 508.8 430 57.9
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 5.4e-142 508.4 457 57.8
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 7.1e-142 508.1 461 57.3
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 2.7e-141 506.1 438 59.6
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 1.3e-140 503.8 435 59.5
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 3.0e-140 502.7 434 57.1
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 8.7e-140 501.1 432 57.4
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 2.8e-138 496.1 444 56.5
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 4.8e-138 495.4 433 57.0
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.8e-137 493.4 423 57.7
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 2.4e-137 493.0 436 58.3
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 6.9e-137 491.5 431 57.1
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 2.0e-136 490.0 438 57.5
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 5.8e-136 488.4 438 56.4
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 7.6e-136 488.0 469 55.0
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 9.9e-136 487.6 376 63.0
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 6.4e-135 485.0 433 57.3
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 4.2e-134 482.3 423 57.0
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 4.2e-134 482.3 437 55.1
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.5e-134 481.9 377 62.3
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 5.5e-134 481.9 418 58.4
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 9.3e-134 481.1 461 55.7
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 6.0e-133 478.4 461 55.7
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 3.0e-132 476.1 418 56.0
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.5e-131 473.8 446 57.2
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 2.5e-131 473.0 471 52.7
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 5.6e-131 471.9 425 55.5
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 6.9e-129 464.9 414 55.8
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 1.3e-127 460.7 383 59.8
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 9.3e-126 454.5 432 51.4
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 2.7e-125 453.0 485 50.7
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 1.0e-124 451.1 439 52.6
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 2.3e-124 449.9 431 52.7
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 5.1e-124 448.7 440 51.4
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 6.7e-124 448.4 385 58.2
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 2.5e-123 446.4 383 57.4
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 7.4e-123 444.9 379 57.8
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 2.4e-121 439.9 432 53.2
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 4.1e-121 439.1 429 52.4
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 9.0e-121 438.0 467 51.6
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 2.6e-120 436.4 378 57.9
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 1.7e-119 433.7 381 55.4
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 2.2e-119 433.3 453 52.1
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 2.9e-119 433.0 429 51.7
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 1.9e-118 430.3 441 51.0
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 1.4e-116 424.1 372 55.6
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 2.0e-115 420.2 379 56.2
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 5.7e-115 418.7 443 52.8
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 4.8e-114 415.6 435 47.6
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 5.3e-113 412.1 380 54.2
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 4.5e-112 409.1 377 54.9
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 3.9e-108 396.0 323 59.1
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 2.0e-107 393.7 377 51.5
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 2.8e-106 389.8 405 51.4
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 3.1e-105 386.3 403 49.6
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 5.3e-105 385.6 441 47.2
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 2.5e-102 376.7 442 48.9
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 2.1e-101 373.6 464 45.9
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 3.9e-100 369.4 445 47.0
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 1.1e-99 367.9 429 46.4
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 7.4e-99 365.2 442 45.0
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 1.7e-98 364.0 443 44.5
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 2.2e-98 363.6 442 45.2
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 2.8e-98 363.2 436 46.6
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 1.1e-97 361.3 440 45.9
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 1.6e-96 357.5 427 44.7
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 2.6e-96 356.7 427 44.7
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 1.7e-95 354.0 433 45.5
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 3.2e-94 349.7 345 54.2
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 6.8e-92 342.0 429 40.8
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 2.8e-90 336.7 293 54.9
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 4.8e-90 335.9 454 42.1
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.0e-87 328.2 446 40.6
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 1.3e-87 327.8 423 46.1
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 1.3e-87 327.8 447 42.5
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 7.2e-86 322.0 429 40.1
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 9.4e-86 321.6 387 46.8
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.4e-84 317.8 438 42.7
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.2e-83 314.7 468 42.3
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 4.4e-83 312.8 438 42.2
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 1.3e-82 311.2 394 43.7
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 7.2e-78 295.4 349 47.0
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 3.7e-74 283.1 436 38.3
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 6.6e-71 272.3 272 52.2
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 8.0e-69 265.4 393 38.4
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 6.6e-55 219.2 437 31.8
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 3.1e-52 210.3 278 43.2
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 1.5e-27 128.3 137 48.2
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 5.6e-22 109.8 147 42.9
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.3e-13 82.0 76 51.3
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 9.0e-12 75.9 58 70.7
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 9.3e-09 65.9 60 53.3
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 2.3e-07 61.2 52 63.5
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 3.0e-07 60.8 78 52.6
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 6.7e-07 59.7 53 60.4
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 7.4e-06 56.2 53 52.8


User provided reference genes

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