Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 4.3e-89 331.3 162 100.0
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 1.0e-74 283.5 164 84.8
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 1.6e-72 276.2 164 86.6
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 3.4e-62 241.9 163 79.8
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 8.4e-61 237.3 166 75.9
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 1.3e-58 229.9 146 81.5
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 2.5e-52 209.1 162 70.4
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 2.5e-52 209.1 162 70.4
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 3.3e-49 198.7 166 67.5
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 5.9e-46 188.0 157 65.6
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 5.9e-46 188.0 162 63.6
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 5.9e-46 188.0 162 63.6
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 4.1e-39 165.2 163 57.1
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 3.6e-35 152.1 154 57.1
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 2.3e-18 96.3 160 41.2
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 7.5e-17 91.3 167 36.5
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.3e-16 90.5 139 40.3
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 2.8e-16 89.4 114 45.6
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 2.8e-16 89.4 149 41.6
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 8.3e-16 87.8 161 36.0
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.8e-15 86.7 152 38.2
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.8e-15 86.7 158 38.6
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 2.4e-15 86.3 104 48.1
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 7.0e-15 84.7 134 40.3
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 1.2e-14 84.0 169 37.3
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.2e-14 84.0 139 37.4
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.6e-14 83.6 152 37.5
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 1.6e-14 83.6 157 38.2
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.5e-14 82.4 133 36.8
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 5.9e-14 81.6 157 37.6
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 1.7e-13 80.1 142 40.8
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 2.2e-13 79.7 144 43.1
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.5e-13 78.2 144 42.4
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 6.5e-13 78.2 138 39.1
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 1.5e-12 77.0 98 43.9
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.5e-12 77.0 144 42.4
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.9e-12 76.6 163 39.3
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 1.9e-12 76.6 156 35.9
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 1.9e-12 76.6 144 38.9
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.5e-12 76.3 141 39.0
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.5e-12 76.3 139 38.1
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 4.2e-12 75.5 144 41.0
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 5.5e-12 75.1 146 35.6
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 5.5e-12 75.1 71 56.3
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 7.2e-12 74.7 141 37.6
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 7.2e-12 74.7 150 37.3
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 1.6e-11 73.6 147 37.4
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 2.7e-11 72.8 145 40.0
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 3.6e-11 72.4 141 39.0
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.7e-11 72.0 164 36.0
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 6.1e-11 71.6 137 37.2
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 8.0e-11 71.2 164 36.6
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 8.0e-11 71.2 158 34.2
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 1.0e-10 70.9 157 33.8
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 1.4e-10 70.5 152 38.8
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 1.4e-10 70.5 151 35.1
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.4e-10 70.5 142 41.5
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.4e-10 70.5 143 34.3
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.4e-10 70.5 143 34.3
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 1.4e-10 70.5 148 35.1
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.8e-10 70.1 159 34.6
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.8e-10 70.1 159 34.6
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 2.3e-10 69.7 150 34.0
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 3.0e-10 69.3 136 36.8
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 4.0e-10 68.9 73 54.8
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 5.2e-10 68.6 136 36.8
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 5.2e-10 68.6 73 53.4
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 6.8e-10 68.2 67 55.2
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 6.8e-10 68.2 85 48.2
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 6.8e-10 68.2 144 37.5
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 1.2e-09 67.4 144 34.7
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 1.5e-09 67.0 135 37.0
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 1.5e-09 67.0 136 35.3
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 1.5e-09 67.0 139 35.3
Aqoxy7G03536 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 2.0e-09 66.6 153 38.6
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.0e-09 66.6 143 35.0
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 3.4e-09 65.9 88 42.0
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 3.4e-09 65.9 141 36.9
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 3.4e-09 65.9 146 37.7
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 3.4e-09 65.9 155 34.8
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 4.4e-09 65.5 61 52.5
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 4.4e-09 65.5 137 36.5
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 4.4e-09 65.5 151 31.8
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 7.5e-09 64.7 142 39.4
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 9.8e-09 64.3 136 37.5
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.3e-08 63.9 149 32.2
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 1.7e-08 63.5 133 35.3
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 1.7e-08 63.5 134 32.1
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 2.2e-08 63.2 90 46.7
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.2e-08 63.2 100 42.0
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.2e-08 63.2 144 31.9
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.8e-08 62.8 144 33.3
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.8e-08 62.8 140 34.3
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 3.7e-08 62.4 133 36.8
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 3.7e-08 62.4 61 50.8
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 3.7e-08 62.4 121 37.2
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 3.7e-08 62.4 131 35.1
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 3.7e-08 62.4 143 31.5
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 4.9e-08 62.0 138 37.0
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 4.9e-08 62.0 148 35.8
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 4.9e-08 62.0 116 36.2
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 4.9e-08 62.0 70 47.1
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 4.9e-08 62.0 69 49.3
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 6.3e-08 61.6 55 50.9
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 6.3e-08 61.6 144 34.7
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 8.3e-08 61.2 144 33.3
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 8.3e-08 61.2 144 33.3
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 8.3e-08 61.2 139 33.8
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 8.3e-08 61.2 137 31.4
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.1e-07 60.8 154 31.8
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.1e-07 60.8 144 33.3
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 1.1e-07 60.8 137 35.8
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 1.1e-07 60.8 144 32.6
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.1e-07 60.8 142 29.6
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 1.4e-07 60.5 144 35.4
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 1.8e-07 60.1 92 41.3
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 1.8e-07 60.1 116 42.2
PSO384G4887 Papaver somniferum HOM05D000107 ORTHO05D000062 1.8e-07 60.1 63 50.8
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 1.8e-07 60.1 143 34.3
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.8e-07 60.1 137 34.3
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 2.4e-07 59.7 143 32.9
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 3.1e-07 59.3 74 48.6
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 3.1e-07 59.3 140 31.4
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 3.1e-07 59.3 140 35.0
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 4.1e-07 58.9 140 35.0
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 4.1e-07 58.9 77 36.4
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 4.1e-07 58.9 53 54.7
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 5.4e-07 58.5 91 41.8
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 5.4e-07 58.5 57 49.1
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 5.4e-07 58.5 52 53.8
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 7.0e-07 58.2 85 43.5
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 7.0e-07 58.2 149 35.6
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 7.0e-07 58.2 92 40.2
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 9.2e-07 57.8 134 32.1
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.2e-06 57.4 48 54.2
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 1.2e-06 57.4 129 35.7
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.2e-06 57.4 80 41.2
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 1.6e-06 57.0 162 30.9
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 1.6e-06 57.0 133 31.6
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.0e-06 56.6 82 41.5
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 2.7e-06 56.2 150 33.3
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.7e-06 56.2 95 40.0
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.7e-06 56.2 133 30.8
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 3.5e-06 55.8 49 59.2
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 3.5e-06 55.8 50 52.0
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 3.5e-06 55.8 144 30.6
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 4.5e-06 55.5 139 33.1
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.5e-06 55.5 82 41.5
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.9e-06 55.1 72 44.4
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 7.7e-06 54.7 152 33.6


User provided reference genes

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