Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 3.4e-98 361.7 185 100.0
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 8.6e-94 347.1 184 95.7
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 6.8e-91 337.4 184 92.9
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 9.9e-90 333.6 184 91.8
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 6.6e-86 320.9 184 87.5
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.1e-85 320.1 184 85.3
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.1e-85 320.1 184 85.3
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.1e-85 320.1 184 85.3
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.5e-85 319.7 184 86.4
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.5e-85 319.7 184 86.4
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 1.5e-85 319.7 184 85.9
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 1.9e-85 319.3 184 85.9
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 7.3e-85 317.4 184 87.0
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.8e-84 315.5 184 84.2
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 4.7e-84 314.7 183 85.8
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 6.2e-84 314.3 183 85.2
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 2.4e-83 312.4 183 85.2
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 4.0e-83 311.6 183 84.7
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 8.9e-83 310.5 187 84.0
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 1.2e-79 300.1 185 82.7
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 4.0e-75 285.0 184 77.2
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 6.9e-75 284.3 184 74.5
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 7.6e-74 280.8 184 76.6
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.3e-73 280.0 184 74.5
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 2.2e-73 279.3 184 72.3
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 3.8e-73 278.5 184 72.3
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 4.9e-73 278.1 184 73.9
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 8.4e-73 277.3 184 72.3
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 1.1e-72 276.9 184 75.0
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 3.2e-72 275.4 184 73.4
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 4.2e-72 275.0 184 73.9
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 5.4e-72 274.6 184 74.5
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 7.1e-72 274.2 186 77.4
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 9.3e-72 273.9 184 72.8
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 1.2e-71 273.5 184 73.9
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.2e-71 273.5 184 73.9
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 1.2e-71 273.5 184 72.8
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 2.1e-71 272.7 184 73.4
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.5e-71 271.9 184 74.5
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 6.0e-71 271.2 184 70.7
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 7.9e-71 270.8 184 73.4
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 7.9e-71 270.8 184 73.4
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 1.0e-70 270.4 184 73.4
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.8e-70 269.6 161 84.5
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.8e-70 269.6 184 73.9
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 1.8e-70 269.6 184 71.2
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 2.3e-70 269.2 184 71.2
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 2.3e-70 269.2 184 72.3
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 3.9e-70 268.5 184 73.4
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 3.9e-70 268.5 184 71.7
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.1e-70 268.1 184 72.8
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 6.7e-70 267.7 184 69.6
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 6.7e-70 267.7 184 72.8
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.1e-69 266.9 184 71.2
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.1e-69 266.9 184 71.7
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 1.5e-69 266.5 184 70.7
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 3.3e-69 265.4 184 70.7
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 7.4e-69 264.2 184 71.2
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 9.6e-69 263.8 175 72.0
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 9.6e-69 263.8 184 70.7
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 1.6e-68 263.1 184 69.6
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 1.6e-68 263.1 184 68.5
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 3.6e-68 261.9 184 70.7
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 6.2e-68 261.2 184 70.7
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 6.2e-68 261.2 184 70.7
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.4e-67 260.0 184 68.5
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 1.8e-67 259.6 184 67.4
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 1.8e-67 259.6 184 70.1
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 2.4e-67 259.2 184 70.7
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 3.1e-67 258.8 176 72.7
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.0e-67 258.5 184 70.7
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 5.3e-67 258.1 184 67.4
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.9e-67 257.7 184 70.1
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 3.4e-66 255.4 182 69.2
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 3.4e-66 255.4 184 67.9
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 4.5e-66 255.0 184 68.5
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.6e-66 254.2 185 70.3
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 7.6e-66 254.2 184 70.7
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 7.6e-66 254.2 176 69.9
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 2.2e-65 252.7 184 64.7
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 3.8e-65 251.9 184 69.0
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 4.9e-65 251.5 176 71.0
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.1e-64 250.4 204 66.2
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 1.1e-64 250.4 196 65.3
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 1.4e-64 250.0 185 69.2
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 7.1e-64 247.7 184 66.8
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 1.6e-63 246.5 184 66.8
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.1e-63 246.1 179 68.2
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 2.1e-63 246.1 179 67.0
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 2.7e-63 245.7 184 66.3
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 3.5e-63 245.4 184 67.9
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 6.0e-63 244.6 183 67.2
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 7.9e-63 244.2 186 66.1
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 1.3e-62 243.4 184 66.8
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 1.3e-62 243.4 184 65.8
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 1.8e-62 243.0 183 64.5
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 6.7e-62 241.1 184 66.8
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 8.7e-62 240.7 184 64.1
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 1.9e-61 239.6 184 66.3
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 2.5e-61 239.2 176 68.2
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 3.3e-61 238.8 176 67.6
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 5.6e-61 238.0 176 67.0
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.6e-60 236.5 184 64.7
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 3.7e-60 235.3 176 67.6
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.8e-60 235.0 165 68.5
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 6.2e-60 234.6 165 68.5
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 5.3e-59 231.5 184 64.1
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 4.5e-58 228.4 176 65.3
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 1.0e-57 227.3 176 65.3
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 4.9e-57 224.9 159 69.2
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 6.5e-57 224.6 184 62.0
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 1.9e-56 223.0 184 64.1
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 5.5e-56 221.5 181 59.7
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 1.0e-54 217.2 186 60.8
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 3.3e-53 212.2 306 43.1
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 7.4e-53 211.1 184 57.6
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 2.6e-50 202.6 147 70.1
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 7.6e-50 201.1 234 49.1
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 1.0e-49 200.7 221 50.7
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.3e-46 190.3 219 52.1
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 3.0e-46 189.1 158 59.5
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 8.7e-46 187.6 203 51.2
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 2.8e-44 182.6 181 50.3
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 6.9e-43 177.9 174 51.1
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 4.5e-42 175.3 128 69.5
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 9.4e-40 167.5 210 47.6
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 6.7e-38 161.4 104 75.0
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 2.6e-37 159.5 181 47.5
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 4.8e-36 155.2 184 45.7
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 2.0e-34 149.8 103 71.8
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.7e-33 146.7 144 52.1
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 6.5e-33 144.8 101 68.3
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 2.7e-31 139.4 112 61.6
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 5.2e-30 135.2 159 45.3
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.6e-29 132.9 114 59.6
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 3.3e-29 132.5 94 67.0
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 4.4e-29 132.1 103 65.0
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 5.7e-29 131.7 85 72.9
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.6e-26 122.9 74 79.7
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.0e-25 120.9 74 78.4
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.7e-25 120.2 169 40.2
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 2.9e-25 119.4 105 61.0
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.6e-23 112.5 73 72.6
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 3.6e-23 112.5 70 78.6
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 4.7e-23 112.1 130 45.4
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 6.7e-22 108.2 75 74.7
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 4.4e-21 105.5 170 38.2
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.8e-19 100.1 71 69.0
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.2e-17 93.2 77 61.0
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 6.5e-17 91.7 68 66.2
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.5e-16 90.5 110 43.6
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.5e-13 80.5 84 50.0
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 4.4e-13 79.0 157 33.8
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 5.7e-13 78.6 103 45.6
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 2.8e-12 76.3 49 71.4
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.7e-12 75.9 56 62.5
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 4.1e-11 72.4 65 60.0
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 1.6e-10 70.5 70 50.0
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.6e-10 70.5 45 73.3
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 2.9e-09 66.2 181 29.3
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 1.9e-08 63.5 40 72.5
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 3.2e-08 62.8 45 64.4
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 1.6e-07 60.5 73 49.3
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 8.0e-07 58.2 42 61.9


User provided reference genes

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