Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 3.8e-98 361.7 209 100.0
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 5.7e-86 321.2 212 88.2
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 2.9e-82 308.9 213 84.0
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 6.6e-82 307.8 212 80.7
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 1.2e-75 287.0 213 76.5
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 1.2e-75 287.0 213 76.5
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 2.7e-75 285.8 209 77.0
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 2.6e-70 269.2 184 81.0
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 2.6e-70 269.2 209 75.6
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 9.8e-70 267.3 214 73.4
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 2.1e-59 233.0 213 67.1
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 2.3e-58 229.6 181 75.7
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.4e-47 193.7 218 55.5
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.2e-46 190.7 209 56.9
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 6.6e-42 174.9 223 51.6
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 2.5e-41 172.9 223 51.1
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 1.6e-40 170.2 223 51.6
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 1.6e-40 170.2 223 51.6
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 1.6e-40 170.2 223 51.6
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 6.2e-40 168.3 220 53.2
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 3.1e-39 166.0 226 51.8
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 1.2e-38 164.1 227 51.5
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 4.9e-37 158.7 214 50.5
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 1.9e-36 156.8 100 82.0
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.7e-35 152.9 215 48.8
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.7e-34 150.2 225 45.3
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 6.2e-32 141.7 222 49.5
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 7.9e-27 124.8 222 45.0
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 3.0e-26 122.9 218 43.6
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 3.9e-26 122.5 225 40.4
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 1.9e-25 120.2 224 46.4
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 3.7e-24 115.9 186 44.1
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 3.7e-24 115.9 217 38.2
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 6.2e-24 115.2 217 38.2
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 6.2e-24 115.2 170 42.9
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 1.1e-23 114.4 187 42.2
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 1.4e-23 114.0 184 41.8
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 1.8e-23 113.6 219 38.4
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 4.0e-23 112.5 210 42.4
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 6.9e-23 111.7 204 38.2
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 9.0e-23 111.3 208 41.8
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 9.0e-23 111.3 208 42.3
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 1.5e-22 110.5 177 46.9
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 3.4e-22 109.4 219 42.5
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 5.8e-22 108.6 222 39.6
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 7.6e-22 108.2 214 39.3
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 7.6e-22 108.2 203 39.9
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 1.3e-21 107.5 225 41.8
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 1.3e-21 107.5 199 42.2
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 2.9e-21 106.3 228 35.1
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 2.9e-21 106.3 246 37.0
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 3.8e-21 105.9 195 41.5
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 6.5e-21 105.1 209 39.7
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 6.5e-21 105.1 214 37.9
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 8.4e-21 104.8 195 41.0
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 8.4e-21 104.8 211 39.8
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 1.1e-20 104.4 223 37.2
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 1.1e-20 104.4 159 43.4
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 1.4e-20 104.0 218 39.4
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 1.4e-20 104.0 162 43.2
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 1.9e-20 103.6 255 33.3
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 3.2e-20 102.8 218 38.1
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 7.1e-20 101.7 210 43.8
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 7.1e-20 101.7 218 37.6
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 7.1e-20 101.7 218 38.1
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 7.1e-20 101.7 173 42.2
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 9.3e-20 101.3 183 45.4
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 1.2e-19 100.9 219 37.9
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.2e-19 100.9 219 37.9
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 1.2e-19 100.9 206 43.2
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 1.2e-19 100.9 224 36.6
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.6e-19 100.5 179 41.9
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 1.6e-19 100.5 183 42.6
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 2.7e-19 99.8 199 36.7
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 2.7e-19 99.8 167 43.1
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 3.5e-19 99.4 182 39.0
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 4.6e-19 99.0 115 50.4
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 6.0e-19 98.6 200 38.5
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 2.3e-18 96.7 205 37.6
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.3e-18 96.7 179 38.0
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 3.0e-18 96.3 175 38.9
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 3.9e-18 95.9 171 43.9
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 3.9e-18 95.9 183 36.6
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 6.7e-18 95.1 208 38.5
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 6.7e-18 95.1 205 37.6
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 8.7e-18 94.7 217 34.1
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 8.7e-18 94.7 211 37.9
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 1.5e-17 94.0 153 46.4
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.9e-17 93.6 109 53.2
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 3.3e-17 92.8 189 41.8
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 4.3e-17 92.4 171 42.1
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 5.7e-17 92.0 98 53.1
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 5.7e-17 92.0 213 35.7
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 1.3e-16 90.9 206 36.4
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 1.3e-16 90.9 183 37.7
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 1.3e-16 90.9 212 41.0
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 1.6e-16 90.5 199 33.7
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 1.6e-16 90.5 170 37.1
BcaC01g03341 Brassica carinata HOM05D005697 ORTHO05D006951 3.7e-16 89.4 196 39.8
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 4.8e-16 89.0 247 33.6
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 6.2e-16 88.6 91 52.7
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 8.2e-16 88.2 203 36.5
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 1.1e-15 87.8 159 42.8
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 1.1e-15 87.8 185 38.4
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 1.4e-15 87.4 194 37.1
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 1.4e-15 87.4 111 48.6
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 1.4e-15 87.4 108 49.1
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 1.8e-15 87.0 201 38.3
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 2.4e-15 86.7 121 43.8
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 3.1e-15 86.3 159 40.3
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 4.0e-15 85.9 223 33.2
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 4.0e-15 85.9 168 36.9
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 5.3e-15 85.5 187 38.5
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 5.3e-15 85.5 159 45.9
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 5.3e-15 85.5 207 39.1
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 6.9e-15 85.1 180 39.4
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.2e-14 84.3 213 32.9
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 4.5e-14 82.4 179 39.1
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 1.0e-13 81.3 231 35.9
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 2.9e-13 79.7 183 39.3
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 3.8e-13 79.3 193 33.7
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 1.1e-12 77.8 223 31.8
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 1.1e-12 77.8 223 31.8
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 9.3e-12 74.7 174 33.3
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 9.3e-12 74.7 118 42.4
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 7.9e-11 71.6 168 38.7
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 1.0e-10 71.2 94 46.8
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 1.2e-06 57.8 192 31.8


User provided reference genes

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