Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 7.8e-19 96.7 71 100.0
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.5e-17 92.4 71 95.8
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 8.1e-16 86.7 70 91.4
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 2.3e-15 85.1 71 88.7
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 2.6e-14 81.6 45 97.8
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 2.6e-14 81.6 45 97.8
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 2.6e-14 81.6 45 97.8
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 7.5e-14 80.1 65 93.8
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 9.9e-14 79.7 67 91.0
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 3.7e-13 77.8 47 89.4
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 6.4e-13 77.0 47 87.2
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 6.4e-13 77.0 42 97.6
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.1e-12 76.3 47 87.2
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 1.1e-12 76.3 47 87.2
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 1.4e-12 75.9 47 85.1
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 3.2e-12 74.7 47 83.0
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 5.4e-12 73.9 47 83.0
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 5.4e-12 73.9 47 83.0
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 5.4e-12 73.9 47 83.0
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 1.2e-11 72.8 47 83.0
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 2.1e-11 72.0 66 86.4
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.1e-11 72.0 47 80.9
C08p07830 Brassica napus HOM05D005458 ORTHO05D005672 3.5e-11 71.2 41 92.7
BolC8t47637H Brassica oleracea HOM05D005458 ORTHO05D005672 3.5e-11 71.2 41 92.7
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 3.5e-11 71.2 47 83.0
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 6.0e-11 70.5 44 86.4
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 7.8e-11 70.1 47 85.1
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 7.8e-11 70.1 48 81.2
BcaC07g37341 Brassica carinata HOM05D005458 ORTHO05D005672 1.0e-10 69.7 40 92.5
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.0e-10 69.7 48 81.2
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.0e-10 69.7 48 81.2
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 1.0e-10 69.7 48 83.3
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.0e-10 69.7 47 78.7
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 1.0e-10 69.7 47 83.0
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 1.7e-10 68.9 47 78.7
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 1.7e-10 68.9 48 81.2
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 2.3e-10 68.6 47 85.1
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 2.3e-10 68.6 45 82.2
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 3.0e-10 68.2 47 78.7
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 5.1e-10 67.4 48 79.2
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 5.1e-10 67.4 48 81.2
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 5.1e-10 67.4 47 78.7
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 6.6e-10 67.0 45 80.0
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 8.6e-10 66.6 45 80.0
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 8.6e-10 66.6 48 81.2
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 8.6e-10 66.6 47 78.7
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 8.6e-10 66.6 48 79.2
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.1e-09 66.2 45 80.0
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.1e-09 66.2 49 75.5
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.1e-09 66.2 49 75.5
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.1e-09 66.2 49 75.5
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 1.5e-09 65.9 47 78.7
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.9e-09 65.5 47 76.6
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 3.3e-09 64.7 48 77.1
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 3.3e-09 64.7 48 77.1
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 3.3e-09 64.7 48 77.1
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 3.3e-09 64.7 42 83.3
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 4.3e-09 64.3 47 78.7
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 4.3e-09 64.3 41 82.9
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 5.6e-09 63.9 48 81.2
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 5.6e-09 63.9 48 81.2
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 7.3e-09 63.5 47 72.3
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 7.3e-09 63.5 47 78.7
Carub.0007s2892 Capsella rubella HOM05D005458 ORTHO05D005672 9.5e-09 63.2 54 83.3
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 9.5e-09 63.2 48 77.1
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 9.5e-09 63.2 48 77.1
AL8G12500 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.2e-08 62.8 68 72.1
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 1.6e-08 62.4 41 82.9
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 2.8e-08 61.6 72 55.6
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 2.8e-08 61.6 48 75.0
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 3.6e-08 61.2 49 75.5
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 3.6e-08 61.2 46 78.3
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 3.6e-08 61.2 44 77.3
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 3.6e-08 61.2 47 76.6
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 3.6e-08 61.2 49 75.5
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 3.6e-08 61.2 48 75.0
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 4.7e-08 60.8 46 76.1
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 4.7e-08 60.8 37 86.5
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 4.7e-08 60.8 46 78.3
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 4.7e-08 60.8 48 72.9
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 6.2e-08 60.5 42 81.0
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 6.2e-08 60.5 47 72.3
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 8.1e-08 60.1 47 74.5
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.4e-07 59.3 47 76.6
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 1.8e-07 58.9 48 70.8
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 1.8e-07 58.9 47 74.5
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 2.4e-07 58.5 48 72.9
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 2.4e-07 58.5 48 72.9
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 2.4e-07 58.5 45 75.6
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 2.4e-07 58.5 45 75.6
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 5.2e-07 57.4 42 78.6
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 6.8e-07 57.0 47 74.5
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 6.8e-07 57.0 46 76.1
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 8.9e-07 56.6 48 70.8
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 8.9e-07 56.6 47 74.5
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 1.5e-06 55.8 45 73.3
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 1.5e-06 55.8 45 73.3
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 1.5e-06 55.8 42 78.6
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 1.5e-06 55.8 46 73.9
Zm00001eb356280 Zea mays HOM05D005458 ORTHO05D005672 1.5e-06 55.8 43 74.4
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 2.0e-06 55.5 47 66.0
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 2.0e-06 55.5 42 78.6
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 2.6e-06 55.1 43 76.7
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 3.4e-06 54.7 42 76.2
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 3.4e-06 54.7 42 76.2
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 3.4e-06 54.7 39 82.1
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 3.4e-06 54.7 43 79.1
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 3.4e-06 54.7 48 68.8
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 4.4e-06 54.3 46 71.7
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 4.4e-06 54.3 46 71.7
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 5.8e-06 53.9 46 71.7
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 7.6e-06 53.5 46 65.2
Ah.05g178960 Amaranthus hybridus HOM05D005458 ORTHO05D005672 9.9e-06 53.1 44 75.0
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 9.9e-06 53.1 41 75.6
BcaB03g16069 Brassica carinata HOM05D005458 ORTHO05D005672 9.9e-06 53.1 42 71.4


User provided reference genes

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