Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G42670 Arabidopsis lyrata HOM05D000325 ORTHO05D000583 1.1e-20 102.4 55 100.0
Thhalv10025095m.g Eutrema salsugineum HOM05D000325 ORTHO05D000583 7.9e-11 69.7 54 77.8
AL4G23720 Arabidopsis lyrata HOM05D000325 ORTHO05D000583 1.0e-10 69.3 41 92.7
AL7G15380 Arabidopsis lyrata HOM05D000325 ORTHO05D000583 1.0e-10 69.3 50 84.0
Gohir.D11G177900 Gossypium hirsutum HOM05D000325 ORTHO05D000583 1.3e-10 68.9 54 75.9
Gorai.007G189800 Gossypium raimondii HOM05D000325 ORTHO05D000583 1.3e-10 68.9 54 75.9
Aa31LG6G12680 Aethionema arabicum HOM05D000325 ORTHO05D000583 1.8e-10 68.6 54 75.9
AT4G35730 Arabidopsis thaliana HOM05D000325 ORTHO05D000583 1.8e-10 68.6 50 82.0
BcaC01g00514 Brassica carinata HOM05D000325 ORTHO05D000583 1.8e-10 68.6 54 75.9
A01p02970 Brassica napus HOM05D000325 ORTHO05D000583 1.8e-10 68.6 54 75.9
A08p21750 Brassica napus HOM05D000325 ORTHO05D000583 1.8e-10 68.6 54 75.9
C01p03320 Brassica napus HOM05D000325 ORTHO05D000583 1.8e-10 68.6 54 75.9
C03p80840 Brassica napus HOM05D000325 ORTHO05D000583 1.8e-10 68.6 54 75.9
BolC1t00317H Brassica oleracea HOM05D000325 ORTHO05D000583 1.8e-10 68.6 54 75.9
BolC3t20338H Brassica oleracea HOM05D000325 ORTHO05D000583 1.8e-10 68.6 54 75.9
BraA01t00280Z Brassica rapa HOM05D000325 ORTHO05D000583 1.8e-10 68.6 54 75.9
BraA08t34128Z Brassica rapa HOM05D000325 ORTHO05D000583 1.8e-10 68.6 54 75.9
MD02G1121300 Malus domestica HOM05D000325 ORTHO05D000583 1.8e-10 68.6 54 75.9
Sp7g33480 Schrenkiella parvula HOM05D000325 ORTHO05D000583 1.8e-10 68.6 54 75.9
CANSAT25G0295 Cannabis sativa HOM05D000325 ORTHO05D000583 2.3e-10 68.2 54 74.1
CARHR244060 Cardamine hirsuta HOM05D000325 ORTHO05D000583 2.3e-10 68.2 50 82.0
Cfa007046 Carpinus fangiana HOM05D000199 ORTHO05D000583 2.3e-10 68.2 54 75.9
CiPaw.07G005000 Carya illinoinensis HOM05D000325 ORTHO05D000583 2.3e-10 68.2 54 75.9
CiPaw.08G180000 Carya illinoinensis HOM05D000325 ORTHO05D000583 2.3e-10 68.2 54 75.9
DCAR_014047 Daucus carota HOM05D000325 ORTHO05D000583 2.3e-10 68.2 54 75.9
Duzib187G1736 Durio zibethinus HOM05D000325 ORTHO05D000583 2.3e-10 68.2 54 75.9
MD15G1235100 Malus domestica HOM05D000325 ORTHO05D000583 2.3e-10 68.2 54 75.9
Thecc.01G009400 Theobroma cacao HOM05D000325 ORTHO05D000583 2.3e-10 68.2 54 75.9
Gohir.A11G170900 Gossypium hirsutum HOM05D000325 ORTHO05D000583 3.0e-10 67.8 54 74.1
QL06p052493 Quercus lobata HOM05D000325 ORTHO05D000583 3.0e-10 67.8 54 75.9
Ca_08921_v3 Cicer arietinum L. HOM05D000325 ORTHO05D000583 3.9e-10 67.4 54 74.1
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 3.9e-10 67.4 54 72.2
Glyma.02G043200 Glycine max HOM05D000325 ORTHO05D000583 3.9e-10 67.4 54 74.1
Glyma.16G120200 Glycine max HOM05D000325 ORTHO05D000583 3.9e-10 67.4 54 74.1
Lj4g0024469 Lotus japonicus HOM05D000325 ORTHO05D000583 3.9e-10 67.4 54 74.1
Lalb_Chr05g0229731 Lupinus albus HOM05D000325 ORTHO05D000583 3.9e-10 67.4 54 74.1
Medtr8g074540 Medicago truncatula HOM05D000325 ORTHO05D000583 3.9e-10 67.4 54 74.1
Phvul.003G268000 Phaseolus vulgaris HOM05D000325 ORTHO05D000583 3.9e-10 67.4 54 74.1
THA.LOC104804285 Tarenaya hassleriana HOM05D000325 ORTHO05D000583 3.9e-10 67.4 54 74.1
TPR.G14971 Trifolium pratense HOM05D000325 ORTHO05D000583 3.9e-10 67.4 54 74.1
VMungo0251G2355 Vigna mungo HOM05D000325 ORTHO05D000583 3.9e-10 67.4 54 74.1
Carub.0007s0453 Capsella rubella HOM05D000325 ORTHO05D000583 5.1e-10 67.0 50 82.0
Dinv08536 Davidia involucrata HOM05D000325 ORTHO05D000583 5.1e-10 67.0 54 74.1
PGR119G1953 Punica granatum HOM05D000325 ORTHO05D000583 5.1e-10 67.0 54 72.2
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 5.1e-10 67.0 54 70.4
COL.COLO4_22516 Corchorus olitorius HOM05D000325 ORTHO05D000583 6.7e-10 66.6 54 74.1
Lsat_1_v5_gn_2_74980 Lactuca sativa HOM05D000325 ORTHO05D000583 6.7e-10 66.6 52 75.0
Manes.01G153000 Manihot esculenta HOM05D000325 ORTHO05D000583 6.7e-10 66.6 54 74.1
Prupe.7G178000 Prunus persica HOM05D000325 ORTHO05D000583 6.7e-10 66.6 54 74.1
ClCG01G020720 Citrullus lanatus HOM05D000325 ORTHO05D000583 8.7e-10 66.2 54 74.1
MELO3C007956.2 Cucumis melo HOM05D000325 ORTHO05D000583 8.7e-10 66.2 54 74.1
CsaV3_6G047650 Cucumis sativus L. HOM05D000325 ORTHO05D000583 8.7e-10 66.2 54 74.1
Eucgr.I02282 Eucalyptus grandis HOM05D000199 ORTHO05D001039 8.7e-10 66.2 54 70.4
HanXRQChr07g0192581 Helianthus annuus HOM05D000325 ORTHO05D000583 8.7e-10 66.2 52 75.0
Hma1.2p1_1639F.1_g294970 Hydrangea macrophylla HOM05D000325 ORTHO05D000583 8.7e-10 66.2 54 74.1
Psat4g103920 Pisum sativum HOM05D000325 ORTHO05D000583 8.7e-10 66.2 54 72.2
arahy.Tifrunner.gnm1.ann1.4BAF6Y Arachis hypogaea HOM05D000325 ORTHO05D000583 1.1e-09 65.9 54 72.2
arahy.Tifrunner.gnm1.ann1.E29QEI Arachis hypogaea HOM05D000325 ORTHO05D000583 1.1e-09 65.9 54 72.2
Ca_22399_v3 Cicer arietinum L. HOM05D000325 ORTHO05D000583 1.1e-09 65.9 43 83.7
Migut.L00738 Erythranthe guttata HOM05D000325 ORTHO05D000583 1.1e-09 65.9 54 70.4
Rhsim08G0028800 Rhododendron simsii HOM05D000325 ORTHO05D000583 1.1e-09 65.9 54 74.1
vmacro18447 Vaccinium macrocarpon HOM05D000325 ORTHO05D000583 1.5e-09 65.5 54 74.1
EL10Ac6g13353 Beta vulgaris HOM05D000325 ORTHO05D000583 2.5e-09 64.7 54 68.5
Nn5g30906 Nelumbo nucifera HOM05D000325 ORTHO05D000583 2.5e-09 64.7 51 74.5
Sed0001918 Sechium edule HOM05D000325 ORTHO05D000583 2.5e-09 64.7 54 72.2
RcHm_v2.0_Chr2g0097911 Rosa chinensis HOM05D000325 ORTHO05D000583 3.3e-09 64.3 54 72.2
GSVIVG01004308001 Vitis vinifera HOM05D000325 ORTHO05D000583 3.3e-09 64.3 54 70.4
Actinidia28738 Actinidia chinensis HOM05D000325 ORTHO05D000583 4.3e-09 63.9 54 70.4
CSS0008458 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 4.3e-09 63.9 54 72.2
Potri.007G059800 Populus trichocarpa HOM05D000325 ORTHO05D000583 4.3e-09 63.9 54 70.4
Cpa.g.sc6.332 Carica papaya HOM05D000325 ORTHO05D000583 5.7e-09 63.5 54 70.4
AUR62026197 Chenopodium quinoa HOM05D000325 ORTHO05D000583 5.7e-09 63.5 54 68.5
AUR62026392 Chenopodium quinoa HOM05D000325 ORTHO05D000583 5.7e-09 63.5 54 68.5
Oeu012557.1 Olea europaea HOM05D000325 ORTHO05D000583 5.7e-09 63.5 54 68.5
SalBow5G2025 Salvia bowleyana HOM05D000325 ORTHO05D000583 5.7e-09 63.5 54 68.5
Sc03g0003820 Simmondsia chinensis HOM05D000325 ORTHO05D000583 5.7e-09 63.5 54 68.5
FvH4_1g10740 Fragaria vesca HOM05D000325 ORTHO05D000583 7.4e-09 63.2 54 70.4
FAN19G0858 Fragaria x ananassa HOM05D000325 ORTHO05D000583 7.4e-09 63.2 54 70.4
FAN26G1371 Fragaria x ananassa HOM05D000325 ORTHO05D000583 7.4e-09 63.2 54 70.4
FAN28G2846 Fragaria x ananassa HOM05D000325 ORTHO05D000583 7.4e-09 63.2 54 70.4
PSO541G2141 Papaver somniferum HOM05D000325 ORTHO05D000583 7.4e-09 63.2 51 74.5
PSO675G8055 Papaver somniferum HOM05D000325 ORTHO05D000583 7.4e-09 63.2 51 74.5
TWI73G0463 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 7.4e-09 63.2 54 70.4
Aqoxy6G01823_Aqoxy6G01824 Aquilegia oxysepala HOM05D000325 ORTHO05D000583 9.7e-09 62.8 51 72.5
Lj2A489T53 Lonicera japonica HOM05D000325 ORTHO05D000583 9.7e-09 62.8 53 71.7
Atru.chr3.936 Acer truncatum HOM05D000325 ORTHO05D000583 1.3e-08 62.4 54 70.4
Ah.03g134160 Amaranthus hybridus HOM05D000325 ORTHO05D000583 1.3e-08 62.4 54 66.7
Hund03658 Selenicereus undatus HOM05D000325 ORTHO05D000583 1.6e-08 62.0 54 66.7
TAR628G0568 Trochodendron aralioides HOM05D000325 ORTHO05D000583 1.6e-08 62.0 51 70.6
Peaxi162Scf00300g00516 Petunia axillaris HOM05D000325 ORTHO05D000583 2.2e-08 61.6 53 69.8
Sabra07G0050600 Salix brachista HOM05D000325 ORTHO05D000583 2.2e-08 61.6 54 68.5
Solyc02g083130.4 Solanum lycopersicum HOM05D000325 ORTHO05D000583 2.2e-08 61.6 53 69.8
Sopen02g027890 Solanum pennellii HOM05D000325 ORTHO05D000583 2.2e-08 61.6 53 69.8
PGSC0003DMG400001544 Solanum tuberosum HOM05D000325 ORTHO05D000583 2.2e-08 61.6 53 69.8
SGA_v2.0_scaffold132G34540 Striga asiatica HOM05D000325 ORTHO05D000583 2.2e-08 61.6 54 66.7
TWI09G0359 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 2.2e-08 61.6 54 68.5
AL6G53370 Arabidopsis lyrata HOM05D000325 ORTHO05D000583 2.8e-08 61.2 36 91.7
CAN.G890.7 Capsicum annuum HOM05D000325 ORTHO05D000583 2.8e-08 61.2 53 67.9
Nitab4.5_0004994g0010 Nicotiana tabacum HOM05D000325 ORTHO05D000583 2.8e-08 61.2 53 69.8
Nitab4.5_0005413g0060 Nicotiana tabacum HOM05D000325 ORTHO05D000583 2.8e-08 61.2 53 69.8
Cc07_g11510 Coffea canephora HOM05D000325 ORTHO05D000583 6.3e-08 60.1 54 64.8
FAN23G0592 Fragaria x ananassa HOM05D000325 ORTHO05D000583 6.3e-08 60.1 54 68.5
MBI08_g37912_MAGBIO Magnolia biondii HOM05D000325 ORTHO05D000583 6.3e-08 60.1 51 68.6
Ciclev10026997m.g Citrus clementina HOM05D000325 ORTHO05D000583 1.4e-07 58.9 39 84.6
Hund08025 Selenicereus undatus HOM05D000030 ORTHO05D000031 1.8e-07 58.5 39 76.9
Hund26034 Selenicereus undatus HOM05D000030 ORTHO05D000031 3.1e-07 57.8 41 73.2
CDE05G0658 Ceratophyllum demersum HOM05D000325 ORTHO05D000583 5.3e-07 57.0 37 78.4
CSS0031658 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 2.0e-06 55.1 54 57.4
Eucgr.C03936 Eucalyptus grandis HOM05D000325 ORTHO05D000583 2.0e-06 55.1 51 60.8
TWI32G0264 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 2.0e-06 55.1 54 55.6
HPP92_012952 Vanilla planifolia HOM05D000325 ORTHO05D000583 2.0e-06 55.1 51 64.7
Duzib211G0208 Durio zibethinus HOM05D000325 ORTHO05D000583 2.6e-06 54.7 54 55.6
Haze_17882 Corylus avellana HOM05D000325 ORTHO05D000583 3.4e-06 54.3 54 53.7
Dinv44715 Davidia involucrata HOM05D000325 ORTHO05D000583 3.4e-06 54.3 54 53.7
Atru.chr13.1887 Acer truncatum HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
Aqoxy5G01982 Aquilegia oxysepala HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
Cc10_g06150 Coffea canephora HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
Eucgr.C03673 Eucalyptus grandis HOM05D000325 ORTHO05D000583 4.5e-06 53.9 51 60.8
FvH4_2g12480 Fragaria vesca HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
FAN24G2200 Fragaria x ananassa HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
Gohir.A05G248700 Gossypium hirsutum HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
Gohir.D05G250500 Gossypium hirsutum HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
Gorai.009G261900 Gossypium raimondii HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
Hma1.2p1_1088F.1_g255560 Hydrangea macrophylla HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 51.9
Hma1.2p1_2822F.1_g329040 Hydrangea macrophylla HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 51.9
MD00G1078400 Malus domestica HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
MD15G1309100 Malus domestica HOM05D000325 ORTHO05D000583 4.5e-06 53.9 38 78.9
Prupe.8G049000 Prunus persica HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
PGR102G1485 Punica granatum HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
Thecc.08G198200 Theobroma cacao HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
GSVIVG01001596001 Vitis vinifera HOM05D000325 ORTHO05D000583 4.5e-06 53.9 54 53.7
Cpa.g.sc66.122 Carica papaya HOM05D000325 ORTHO05D000583 5.9e-06 53.5 54 51.9
CiPaw.15G007100 Carya illinoinensis HOM05D000325 ORTHO05D000583 5.9e-06 53.5 54 53.7
Ciclev10000853m.g Citrus clementina HOM05D000325 ORTHO05D000583 5.9e-06 53.5 52 55.8
Duzib116G0729 Durio zibethinus HOM05D000325 ORTHO05D000583 5.9e-06 53.5 54 53.7
ECA247G1322 Erigeron canadensis HOM05D000325 ORTHO05D000583 5.9e-06 53.5 54 53.7
FAN20G2075 Fragaria x ananassa HOM05D000325 ORTHO05D000583 5.9e-06 53.5 54 53.7
HanXRQChr02g0043691 Helianthus annuus HOM05D000325 ORTHO05D000583 5.9e-06 53.5 54 53.7
Lsat_1_v5_gn_1_4741 Lactuca sativa HOM05D000325 ORTHO05D000583 5.9e-06 53.5 54 53.7
Manes.02G187600 Manihot esculenta HOM05D000325 ORTHO05D000583 5.9e-06 53.5 54 53.7
Sc26g0002360 Simmondsia chinensis HOM05D000325 ORTHO05D000583 5.9e-06 53.5 54 53.7
ATR0661G158 Amborella trichopoda HOM05D000169 ORTHO05D000542 7.7e-06 53.1 52 55.8
ClCG08G003020 Citrullus lanatus HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
MELO3C026153.2 Cucumis melo HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
CsaV3_6G002880 Cucumis sativus L. HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
DCAR_019987 Daucus carota HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
Eucgr.F04150 Eucalyptus grandis HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
Gohir.D06G113600 Gossypium hirsutum HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
Lj4A110G75 Lonicera japonica HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
MBI05_g01283_MAGBIO Magnolia biondii HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
Nn1g05203 Nelumbo nucifera HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
Rhsim06G0087600 Rhododendron simsii HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
Hund26660 Selenicereus undatus HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
SEGI_36265 Sequoiadendron giganteum HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 55.6
SGA_v2.0_scaffold201G41421 Striga asiatica HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
TAR381G0770 Trochodendron aralioides HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
vmacro21209 Vaccinium macrocarpon HOM05D000325 ORTHO05D000583 7.7e-06 53.1 54 53.7
EL10Ac1g00867 Beta vulgaris HOM05D000325 ORTHO05D000583 1.0e-05 52.8 54 51.9
AUR62024881 Chenopodium quinoa HOM05D000325 ORTHO05D000583 1.0e-05 52.8 54 53.7
Gorai.010G129400 Gossypium raimondii HOM05D000325 ORTHO05D000583 1.0e-05 52.8 54 53.7
Mapoly0105s0005 Marchantia polymorpha HOM05D000325 ORTHO05D000583 1.0e-05 52.8 52 57.7
Potri.019G087400 Populus trichocarpa HOM05D000325 ORTHO05D000583 1.0e-05 52.8 54 51.9
QL02p034859 Quercus lobata HOM05D000325 ORTHO05D000583 1.0e-05 52.8 54 51.9
RcHm_v2.0_Chr6g0272921 Rosa chinensis HOM05D000325 ORTHO05D000583 1.0e-05 52.8 54 51.9


User provided reference genes

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