Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 2.4e-110 402.1 198 100.0
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 4.4e-104 381.3 198 94.4
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.2e-101 373.2 198 91.4
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 3.5e-101 371.7 198 90.4
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 1.7e-100 369.4 198 90.9
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 1.7e-100 369.4 198 90.9
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 1.7e-100 369.4 198 90.9
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 3.9e-100 368.2 198 91.4
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.9e-99 365.9 198 88.9
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 4.3e-99 364.8 198 88.4
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 4.3e-99 364.8 198 89.9
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.4e-97 359.8 198 87.9
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 4.0e-97 358.2 198 87.4
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.5e-96 356.3 198 86.4
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 2.0e-96 355.9 198 86.9
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 2.6e-96 355.5 198 86.4
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 9.9e-96 353.6 219 81.7
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 9.9e-96 353.6 216 82.4
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 2.4e-94 349.0 198 86.9
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.4e-86 322.4 198 76.3
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 2.1e-82 309.3 180 82.8
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 4.0e-81 305.1 198 74.2
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 5.3e-81 304.7 198 73.2
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 71.2
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 71.2
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 71.2
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 72.2
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 70.2
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 70.7
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 70.2
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 2.4e-78 295.8 198 71.2
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 70.7
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 70.7
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.2e-77 293.5 198 71.2
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 69.7
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 69.7
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 4.6e-77 291.6 198 69.2
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 6.0e-77 291.2 198 70.2
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 67.2
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 70.2
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 69.2
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 69.7
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 69.2
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 71.2
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 6.6e-76 287.7 199 68.8
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 6.6e-76 287.7 198 68.2
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 6.6e-76 287.7 198 69.2
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 8.7e-76 287.3 198 67.7
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 8.7e-76 287.3 198 67.7
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 66.7
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 68.2
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 7.3e-75 284.3 198 68.2
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 7.3e-75 284.3 198 68.2
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.3e-74 283.5 198 68.7
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.3e-74 283.5 200 68.0
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 1.6e-74 283.1 198 67.7
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.6e-74 283.1 198 67.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.6e-74 283.1 198 67.2
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 3.6e-74 282.0 199 68.8
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 3.6e-74 282.0 198 65.7
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 3.6e-74 282.0 198 67.7
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 4.8e-74 281.6 198 69.2
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 4.8e-74 281.6 198 69.2
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 8.1e-74 280.8 198 67.7
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 65.2
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 67.2
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 3.1e-73 278.9 198 67.2
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 5.3e-73 278.1 198 66.7
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 6.9e-73 277.7 198 67.2
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 1.2e-72 276.9 198 66.7
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 3.4e-72 275.4 198 64.6
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 4.5e-72 275.0 198 65.2
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 5.8e-72 274.6 198 64.6
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 9.9e-72 273.9 198 64.1
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.3e-71 273.5 198 63.1
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.3e-71 273.5 198 64.1
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 2.2e-71 272.7 200 63.0
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 2.9e-71 272.3 198 61.6
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 3.8e-71 271.9 198 64.6
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 5.5e-70 268.1 198 62.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.2e-69 266.9 198 65.2
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.6e-69 266.5 206 61.7
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 2.7e-69 265.8 217 61.8
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.6e-69 265.0 206 61.2
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 6.0e-69 264.6 198 63.6
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 5.1e-68 261.5 236 56.4
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 8.7e-68 260.8 198 60.6
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 2.5e-67 259.2 145 85.5
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 3.3e-67 258.8 234 55.6
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 4.3e-67 258.5 234 55.1
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 7.4e-67 257.7 233 56.7
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.6e-67 257.3 198 61.6
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.6e-66 256.5 241 55.2
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 2.1e-66 256.1 176 68.8
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.4e-65 253.4 170 70.6
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 3.4e-64 248.8 253 51.4
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 7.6e-64 247.7 198 58.1
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 3.8e-63 245.4 198 60.6
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 6.5e-63 244.6 171 63.7
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 8.4e-63 244.2 173 65.3
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 2.7e-61 239.2 155 71.0
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 7.9e-61 237.7 198 57.6
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 1.8e-60 236.5 170 63.5
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 3.0e-60 235.7 188 62.2
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 7.4e-59 231.1 160 68.8
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.3e-58 230.3 198 59.1
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.4e-57 226.9 198 52.5
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.7e-55 219.9 191 55.0
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 2.5e-54 216.1 167 64.1
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 7.2e-54 214.5 198 55.6
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 1.2e-53 213.8 198 49.0
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 5.1e-52 208.4 133 69.9
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 6.3e-50 201.4 135 70.4
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.2e-48 197.2 198 44.9
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 1.5e-48 196.8 196 47.4
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.3e-47 193.7 197 45.7
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 9.7e-43 177.6 120 65.8
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 1.4e-41 173.7 130 60.0
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 1.3e-39 167.2 185 50.8
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.7e-39 166.8 130 62.3
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.9e-38 163.3 115 64.3
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 1.9e-38 163.3 142 55.6
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 1.0e-36 157.5 115 64.3
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.5e-35 153.7 109 72.5
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 3.3e-35 152.5 160 45.6
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.4e-33 147.1 115 52.2
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.8e-33 146.7 115 52.2
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 2.4e-33 146.4 142 45.8
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 8.0e-29 131.3 143 45.5
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 4.0e-28 129.0 87 59.8
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 2.8e-26 122.9 82 75.6
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.8e-25 120.2 145 38.6
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 2.4e-25 119.8 121 52.9
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.3e-23 114.0 77 75.3
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 3.8e-23 112.5 77 76.6
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 9.4e-22 107.8 77 72.7
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 3.6e-21 105.9 77 68.8
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 3.6e-21 105.9 77 68.8
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 4.7e-21 105.5 77 68.8
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 1.8e-20 103.6 60 73.3
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 4.0e-20 102.4 75 68.0
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 5.2e-20 102.1 77 67.5
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.3e-18 97.4 83 60.2
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.8e-18 96.3 77 59.7
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 4.1e-17 92.4 69 69.6
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 7.0e-17 91.7 72 56.9
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.6e-16 90.5 75 61.3
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 2.7e-16 89.7 72 63.9
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 7.7e-16 88.2 56 75.0
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 1.3e-15 87.4 91 45.1
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 1.1e-14 84.3 54 66.7
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.9e-14 83.6 145 38.6
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 3.2e-14 82.8 56 71.4
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 5.5e-14 82.0 61 63.9
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 1.2e-13 80.9 191 27.7
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 1.8e-12 77.0 64 57.8
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 1.2e-11 74.3 119 35.3
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 8.3e-10 68.2 52 57.7
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.4e-09 67.4 55 54.5
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 5.4e-09 65.5 54 42.6
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 1.2e-08 64.3 54 46.3
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.9e-08 62.0 53 54.7
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 1.7e-07 60.5 68 51.5


User provided reference genes

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