Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 2612.0 1340 100.0
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 2352.8 1327 91.2
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 2259.2 1308 88.7
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 2188.3 1338 84.3
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 2099.3 1329 81.4
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 2099.3 1329 81.4
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 2089.7 1330 81.2
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 2086.2 1332 81.0
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 2075.4 1331 80.5
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 0.0e+00 2037.3 1335 80.1
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1995.3 1308 78.2
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1672.1 1308 66.1
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1313.5 1302 54.7
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1254.2 1305 50.4
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1249.6 1305 50.6
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1239.2 1322 50.2
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1228.8 1314 49.6
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1228.8 1322 49.9
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1217.6 1314 49.2
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1216.8 1312 50.4
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1210.3 1314 49.2
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1209.5 1315 49.4
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1208.0 1284 49.9
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1202.2 1294 50.5
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1201.4 1293 50.5
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1201.0 1313 48.9
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1194.1 1293 49.0
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1185.2 1338 48.3
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1178.7 1424 46.6
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1174.8 1291 49.0
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1172.5 1316 48.9
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1162.5 1289 48.0
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1160.6 1319 48.5
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1155.2 1298 49.1
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1143.3 1294 47.6
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1142.5 1283 48.2
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 0.0e+00 1136.3 680 86.2
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1131.3 1272 48.7
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1129.8 1308 46.7
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1126.3 1294 46.4
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1124.4 1291 47.5
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1118.2 1193 50.4
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1114.4 1284 47.6
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1113.6 1305 47.2
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1107.4 1290 46.2
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1105.9 1303 46.0
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1087.8 1305 46.6
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1078.9 1138 50.4
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1077.4 1316 45.5
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 5.3e-310 1068.1 1303 45.7
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 5.3e-310 1068.1 1312 45.4
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 3.8e-308 1062.0 1151 50.4
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 1.2e-306 1057.0 1283 45.7
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 8.8e-305 1050.8 1298 45.7
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 2.8e-303 1045.8 1322 45.1
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 8.2e-303 1044.3 1332 44.5
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 8.2e-303 1044.3 1314 45.6
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 6.9e-302 1041.2 1336 45.1
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 1.9e-299 1033.1 1150 47.7
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 5.5e-299 1031.6 651 82.3
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 3.0e-297 1025.8 1314 45.1
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 5.2e-297 1025.0 1301 43.1
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 4.1e-294 1015.4 1134 47.3
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 5.5e-291 1005.0 1288 43.2
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 9.4e-291 1004.2 1040 51.7
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 1.2e-290 1003.8 1252 44.8
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 3.7e-287 992.3 1294 42.4
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 5.9e-285 984.9 1237 44.7
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 1.3e-279 967.2 1308 43.0
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 2.8e-279 966.1 1058 48.9
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 1.6e-277 960.3 1293 42.8
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 5.9e-277 958.4 1180 45.4
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 7.7e-277 958.0 1130 46.7
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 1.5e-275 953.7 1308 42.2
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 1.2e-274 950.7 1339 40.6
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 4.5e-269 932.2 1295 41.8
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 2.5e-267 926.4 1313 41.7
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 4.7e-266 922.2 921 52.9
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 1.0e-265 921.0 1298 41.6
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 6.8e-265 918.3 1250 42.4
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 3.4e-264 916.0 1201 43.5
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 3.7e-263 912.5 1156 45.8
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.1e-262 911.0 1249 42.8
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 1.1e-251 874.4 1271 39.8
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 5.2e-249 865.5 1303 39.9
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 8.4e-231 805.1 1058 43.5
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.1e-230 804.7 1123 40.8
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 4.0e-225 786.2 1010 44.8
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 2.9e-223 780.0 866 48.4
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 1.4e-214 751.1 1189 38.7
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 6.7e-204 715.7 1157 37.9
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 5.0e-199 699.5 1326 34.9
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 2.0e-192 677.6 873 43.5
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 6.7e-188 662.5 799 43.9
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 1.4e-185 654.8 747 46.7
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 1.5e-179 634.8 1009 37.8
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 1.6e-173 614.8 1033 37.9
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 1.0e-159 568.9 767 43.7
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 2.0e-147 528.1 580 49.8
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 3.9e-143 513.8 462 56.9
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 2.1e-141 508.1 646 43.5
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 5.1e-135 486.9 504 52.6
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 2.7e-128 464.5 396 62.1
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 3.6e-117 427.6 712 38.5
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.7e-111 408.7 491 47.0
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.5e-102 379.0 478 44.1
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 4.5e-91 340.9 1273 25.5
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 1.3e-87 329.3 1269 24.7
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 2.4e-68 265.4 357 37.8
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 1.0e-66 260.0 605 31.9
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 4.0e-63 248.1 393 35.9
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.7e-61 242.7 375 36.0
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 5.0e-58 231.1 160 77.5
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.2e-53 215.7 378 38.6
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 4.9e-45 188.0 110 84.5
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 8.6e-42 177.2 168 50.6
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 3.6e-40 171.8 292 32.2
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 4.3e-33 148.3 193 45.1
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 4.7e-32 144.8 327 32.4
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 4.4e-30 138.3 153 47.7
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 3.2e-28 132.1 144 47.2
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 3.9e-26 125.2 136 47.1
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 2.2e-21 109.4 116 54.3
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 4.6e-19 101.7 436 21.8
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 8.1e-16 90.9 208 26.4
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 1.4e-15 90.1 127 39.4
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 3.5e-11 75.5 115 37.4
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 3.5e-11 75.5 112 40.2
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 3.5e-11 75.5 120 33.3
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 1.3e-10 73.6 65 53.8
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 3.3e-09 68.9 59 62.7
Pp3c5_2370 Physcomitrium patens HOM05D005651 ORTHO05D006877 5.6e-09 68.2 293 22.2
Pp3c1_19010 Physcomitrium patens HOM05D005651 ORTHO05D006877 1.5e-06 60.1 107 35.5


User provided reference genes

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