Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 1.7e-221 772.7 503 100.0
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 3.8e-184 648.7 503 88.5
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 3.5e-174 615.5 507 84.8
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 1.1e-170 604.0 507 85.2
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 2.8e-155 552.7 508 81.1
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 2.6e-148 529.6 508 78.0
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 5.7e-148 528.5 517 77.2
C09p44340 Brassica napus HOM05D007897 ORTHO05D010061 1.7e-139 500.4 503 76.5
BolC9t57304H Brassica oleracea HOM05D007897 ORTHO05D010061 5.9e-137 491.9 503 76.5
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 1.0e-136 491.1 505 76.2
BraA10t43238Z Brassica rapa HOM05D007897 ORTHO05D010061 1.5e-135 487.3 505 75.8
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 2.4e-122 443.4 511 72.0
BcaC04g20377 Brassica carinata HOM05D007897 ORTHO05D010061 1.2e-118 431.0 503 63.4
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 3.5e-113 412.9 507 67.7
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 2.7e-81 307.0 454 62.3
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 6.0e-81 305.8 438 62.8
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 5.6e-79 299.3 450 62.0
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 2.8e-78 297.0 466 53.6
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 4.0e-77 293.1 510 57.3
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 9.0e-77 292.0 466 59.2
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 1.5e-76 291.2 453 59.6
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 3.4e-76 290.0 469 58.8
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.1e-74 285.0 449 59.9
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 9.3e-74 282.0 429 56.4
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 2.7e-73 280.4 432 54.2
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.7e-73 280.4 429 56.4
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 6.0e-73 279.3 458 59.8
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 2.3e-72 277.3 466 59.0
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 5.6e-71 272.7 430 53.0
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 4.5e-68 263.1 430 51.9
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 4.9e-67 259.6 427 47.8
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 6.4e-67 259.2 443 47.6
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 1.4e-66 258.1 458 57.9
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 3.2e-66 256.9 458 57.6
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 9.3e-66 255.4 473 57.9
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 1.2e-65 255.0 442 57.7
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 2.7e-65 253.8 435 58.6
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.8e-64 251.1 432 60.0
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 5.1e-64 249.6 484 55.6
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 5.1e-64 249.6 500 53.0
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 1.5e-63 248.1 442 57.0
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.3e-62 245.0 450 57.3
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 4.8e-62 243.0 462 47.6
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 9.0e-61 238.8 471 54.6
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 1.2e-60 238.4 442 57.7
Lsat_1_v5_gn_1_70121 Lactuca sativa HOM05D007897 ORTHO05D010061 5.8e-60 236.1 429 53.1
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 9.9e-60 235.3 441 54.6
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 2.9e-59 233.8 442 57.2
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 2.9e-59 233.8 436 56.9
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 3.8e-59 233.4 452 55.8
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 8.4e-59 232.3 442 54.1
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 1.4e-58 231.5 441 57.4
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 9.3e-58 228.8 382 63.1
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 2.1e-57 227.6 429 53.8
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.3e-56 224.9 417 57.8
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 6.7e-56 222.6 449 54.6
Glyma.11G253700 Glycine max HOM05D007897 ORTHO05D010061 4.8e-54 216.5 445 54.8
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 3.2e-50 203.8 185 56.8
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 4.6e-49 199.9 194 55.2
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 3.9e-48 196.8 187 54.0
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 1.5e-47 194.9 373 60.6
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 4.3e-47 193.4 375 61.1
Thhalv10027431m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 9.0e-45 185.7 105 81.9
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.7e-44 182.6 382 57.9
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 3.8e-43 180.3 165 54.5
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 8.5e-43 179.1 415 52.5
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 6.7e-40 169.5 180 48.3
Manes.05G199032 Manihot esculenta HOM05D007897 ORTHO05D010061 2.6e-36 157.5 291 69.4
Prupe.1G171300 Prunus persica HOM05D007897 ORTHO05D010061 2.2e-27 127.9 143 51.0
arahy.Tifrunner.gnm1.ann1.EZRM4Y Arachis hypogaea HOM05D007897 ORTHO05D010061 7.2e-26 122.9 322 59.9
A02p10540 Brassica napus HOM05D007897 ORTHO05D010061 9.4e-18 95.9 62 75.8
HanXRQChr09g0243521 Helianthus annuus HOM05D007897 ORTHO05D010061 1.0e-16 92.4 128 37.5
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.0e-15 88.2 414 36.7
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.2e-12 79.0 428 38.1
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 1.6e-12 78.6 194 33.0
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 4.5e-12 77.0 194 29.4
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 7.7e-12 76.3 194 29.4
BcaC04g20378 Brassica carinata HOM05D007897 ORTHO05D032930 1.0e-11 75.9 106 49.1
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 1.0e-11 75.9 175 31.4
C09p44300 Brassica napus HOM05D007897 ORTHO05D032930 3.8e-11 73.9 106 48.1
BolC9t57302H Brassica oleracea HOM05D007897 ORTHO05D032930 3.8e-11 73.9 106 48.1
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 5.0e-11 73.6 196 29.1
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 6.5e-11 73.2 200 29.0
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 8.5e-11 72.8 196 30.1
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 3.2e-10 70.9 195 28.7
Gohir.D07G125650 Gossypium hirsutum HOM05D007897 ORTHO05D010061 9.4e-10 69.3 55 50.9
Gorai.001G135500 Gossypium raimondii HOM05D007897 ORTHO05D010061 1.6e-09 68.6 101 39.6
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 3.6e-09 67.4 118 33.9
Gohir.D01G146401 Gossypium hirsutum HOM05D007897 ORTHO05D010061 6.1e-09 66.6 101 40.6
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 8.0e-09 66.2 188 28.7
HanXRQChr09g0243531 Helianthus annuus HOM05D007897 ORTHO05D010061 1.4e-08 65.5 84 38.1
Gohir.D13G096925 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.8e-08 65.1 83 41.0
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 3.0e-08 64.3 126 32.5
Gorai.002G182100 Gossypium raimondii HOM05D007897 ORTHO05D010061 5.2e-08 63.5 97 37.1


User provided reference genes

Program Settings