Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 0.0e+00 1704.5 902 100.0
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 0.0e+00 1598.6 902 92.4
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 0.0e+00 1567.0 907 89.6
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 0.0e+00 1485.7 910 86.4
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 0.0e+00 1398.6 919 81.4
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 0.0e+00 1392.9 919 83.4
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 0.0e+00 1290.8 925 74.3
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 0.0e+00 1246.9 910 75.5
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 0.0e+00 1224.2 907 74.8
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 0.0e+00 1222.6 904 74.9
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 0.0e+00 1220.3 907 74.9
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 0.0e+00 1204.9 926 73.1
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 0.0e+00 1197.2 933 72.1
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 0.0e+00 1100.5 921 64.6
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 0.0e+00 1080.5 942 65.2
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 4.0e-261 905.2 951 54.6
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.1e-253 880.6 869 56.0
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 5.2e-253 878.2 934 54.8
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 2.9e-251 872.5 938 53.7
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 3.8e-251 872.1 993 51.5
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 3.1e-245 852.4 933 53.9
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 6.9e-245 851.3 1003 50.4
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 9.9e-244 847.4 884 54.9
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 1.4e-242 843.6 884 54.4
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 1.9e-242 843.2 868 54.1
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 3.5e-241 839.0 932 53.1
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 6.0e-241 838.2 942 51.3
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 6.0e-241 838.2 916 52.7
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 1.7e-240 836.6 984 51.5
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.3e-240 836.3 897 53.1
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 3.9e-240 835.5 992 49.9
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 8.7e-240 834.3 932 52.8
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 5.6e-239 831.6 991 51.5
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 4.8e-238 828.6 868 54.7
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 2.4e-237 826.2 966 50.6
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 1.5e-236 823.5 938 50.5
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 2.6e-236 822.8 951 51.5
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 1.3e-235 820.5 868 54.1
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 6.4e-235 818.1 946 51.0
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.4e-234 817.0 898 52.1
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 4.2e-234 815.5 972 50.2
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 4.2e-234 815.5 870 53.6
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 4.2e-234 815.5 982 49.5
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 7.1e-234 814.7 724 60.1
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 4.6e-233 812.0 1019 48.6
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 2.3e-232 809.7 952 50.8
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 8.7e-232 807.7 896 51.9
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 1.5e-231 807.0 967 49.2
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.5e-231 807.0 872 53.7
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 2.1e-230 803.1 922 50.8
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 8.1e-230 801.2 872 52.8
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 4.0e-229 798.9 950 49.9
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 2.0e-228 796.6 965 49.9
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 4.5e-228 795.4 982 48.0
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 1.7e-227 793.5 972 48.0
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 1.4e-226 790.4 982 48.9
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.2e-225 787.3 928 50.1
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 2.7e-225 786.2 974 47.4
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 3.3e-223 779.2 929 49.8
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 4.3e-223 778.9 982 47.8
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 4.3e-223 778.9 950 50.1
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 9.6e-223 777.7 980 46.8
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 1.6e-222 776.9 966 48.1
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 1.8e-221 773.5 813 53.9
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 3.1e-221 772.7 977 47.5
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 6.9e-221 771.5 932 49.0
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 6.9e-221 771.5 942 47.8
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 2.0e-220 770.0 952 49.2
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.0e-219 767.7 1001 47.6
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 2.2e-219 766.5 826 52.9
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 2.5e-218 763.1 875 52.2
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 4.2e-218 762.3 706 58.1
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 9.3e-218 761.1 906 49.6
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 9.3e-218 761.1 875 51.9
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 2.1e-217 760.0 998 48.1
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 2.7e-217 759.6 943 49.5
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 1.8e-216 756.9 999 47.9
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.5e-215 753.8 1014 44.6
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 1.9e-215 753.4 873 49.9
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 7.4e-215 751.5 929 47.5
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 9.7e-215 751.1 878 49.2
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 1.3e-214 750.7 707 56.3
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 4.8e-214 748.8 865 50.2
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 4.8e-214 748.8 654 59.5
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.8e-213 746.9 911 47.2
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 3.1e-213 746.1 660 58.3
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 9.0e-213 744.6 857 50.4
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 1.2e-212 744.2 951 46.3
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.0e-211 741.1 863 50.2
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 2.9e-211 739.6 1075 43.6
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 8.5e-211 738.0 658 57.4
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.9e-210 736.9 919 47.1
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 7.2e-210 734.9 932 47.7
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 1.6e-209 733.8 663 58.5
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 3.6e-209 732.6 850 50.2
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 7.9e-209 731.5 938 46.6
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 5.7e-207 725.3 671 57.1
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 9.7e-207 724.5 941 46.9
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 1.3e-206 724.2 1015 45.3
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.5e-204 717.2 989 44.8
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 2.6e-204 716.5 693 54.8
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 4.5e-204 715.7 840 50.2
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 4.2e-202 709.1 910 48.8
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 4.7e-201 705.7 683 55.3
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.1e-199 701.0 914 47.5
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 2.0e-199 700.3 741 52.8
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 5.9e-196 688.7 865 48.1
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 3.7e-190 669.5 852 46.0
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 4.1e-189 666.0 876 46.7
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 2.7e-188 663.3 697 52.5
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 5.0e-187 659.1 697 52.2
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 6.8e-176 622.1 750 48.1
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.2e-175 621.3 755 46.6
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.8e-165 587.4 692 48.4
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.1e-161 573.9 941 40.3
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 4.3e-154 549.7 702 45.0
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 6.8e-144 515.8 637 45.4
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 1.3e-142 511.5 844 39.9
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 4.8e-121 439.9 667 40.5
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 2.4e-117 427.6 710 42.5
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.9e-106 391.3 516 39.5
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 4.5e-103 380.2 769 34.5
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 8.5e-102 375.9 483 40.4
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.0e-99 369.0 309 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 3.7e-89 334.0 451 40.1
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.9e-33 148.3 117 60.7
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 1.6e-31 142.5 135 63.7
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 2.1e-31 142.1 135 63.7
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.1e-31 142.1 117 58.1
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 2.1e-28 132.1 379 28.8
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 5.4e-24 117.5 172 41.3
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 4.7e-20 104.4 180 36.7
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 6.9e-19 100.5 84 69.0
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 3.4e-18 98.2 102 54.9
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.7e-17 95.9 301 33.2
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 1.4e-16 92.8 102 53.9
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 1.1e-13 83.2 70 70.0


User provided reference genes

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