Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.1e-53 213.0 106 100.0
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.1e-40 169.9 108 83.3
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.1e-32 143.3 105 72.4
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.8e-32 142.5 107 68.2
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 5.9e-31 137.5 110 68.2
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.1e-29 133.3 107 66.4
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 4.3e-29 131.3 107 65.4
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-28 129.8 107 64.5
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-28 129.4 107 64.5
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.6e-28 129.4 107 64.5
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.6e-28 129.4 107 64.5
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.0e-27 126.7 109 64.2
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.2e-19 97.8 105 54.3
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-18 96.7 109 53.2
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.4e-18 95.1 109 54.1
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 9.8e-18 93.6 109 51.4
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.3e-17 93.2 100 54.0
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.2e-17 92.4 111 49.5
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.7e-17 91.7 111 49.5
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 4.9e-17 91.3 115 48.7
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 8.3e-17 90.5 109 50.5
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-16 89.7 109 51.4
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.4e-16 89.7 101 51.5
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 4.1e-16 88.2 109 50.5
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 3.5e-15 85.1 113 45.1
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.5e-15 85.1 105 50.5
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 7.8e-15 84.0 109 48.6
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.0e-14 83.6 93 50.5
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.3e-14 83.2 93 50.5
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.7e-14 82.8 100 48.0
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.7e-14 82.8 93 50.5
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 3.9e-14 81.6 103 50.5
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 5.1e-14 81.3 99 49.5
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 5.1e-14 81.3 96 50.0
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 6.6e-14 80.9 97 46.4
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 8.6e-14 80.5 106 46.2
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 2.5e-13 79.0 94 44.7
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 2.5e-13 79.0 93 48.4
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 2.5e-13 79.0 106 41.5
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 3.3e-13 78.6 111 45.9
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 4.3e-13 78.2 110 45.5
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 1.6e-12 76.3 94 47.9
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 2.1e-12 75.9 99 48.5
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 2.8e-12 75.5 101 42.6
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.8e-12 75.5 104 48.1
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.8e-12 75.5 96 45.8
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.6e-12 75.1 91 46.2
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 3.6e-12 75.1 93 49.5
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 4.7e-12 74.7 110 40.9
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.7e-12 74.7 113 45.1
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.7e-12 74.7 113 45.1
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 4.7e-12 74.7 104 41.3
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 6.2e-12 74.3 85 48.2
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 8.1e-12 73.9 105 45.7
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.1e-11 73.6 101 43.6
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.1e-11 73.6 108 46.3
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.8e-11 72.8 111 44.1
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.3e-11 72.4 98 46.9
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 2.3e-11 72.4 98 46.9
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.1e-11 72.0 84 50.0
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.1e-11 72.0 84 51.2
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 3.1e-11 72.0 107 46.7
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 3.1e-11 72.0 110 44.5
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 5.2e-11 71.2 102 42.2
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 5.2e-11 71.2 102 42.2
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.2e-11 71.2 105 40.0
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.2e-11 71.2 116 44.8
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 6.8e-11 70.9 108 43.5
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 6.8e-11 70.9 109 45.0
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 8.9e-11 70.5 111 47.7
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 8.9e-11 70.5 103 43.7
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 8.9e-11 70.5 103 44.7
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.9e-11 70.5 105 40.0
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 8.9e-11 70.5 103 41.7
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 8.9e-11 70.5 89 44.9
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.2e-10 70.1 112 43.8
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.2e-10 70.1 104 42.3
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.2e-10 70.1 109 43.1
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.2e-10 70.1 100 39.0
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-10 69.7 113 41.6
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.5e-10 69.7 111 39.6
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.5e-10 69.7 97 47.4
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.5e-10 69.7 116 43.1
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.0e-10 69.3 105 39.0
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 2.0e-10 69.3 94 45.7
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.6e-10 68.9 92 44.6
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.4e-10 68.6 114 43.0
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.4e-10 68.6 113 42.5
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 4.4e-10 68.2 87 43.7
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 4.4e-10 68.2 93 45.2
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 4.4e-10 68.2 79 53.2
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.8e-10 67.8 111 41.4
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 5.8e-10 67.8 106 45.3
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 5.8e-10 67.8 108 43.5
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 7.6e-10 67.4 96 45.8
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 7.6e-10 67.4 101 43.6
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.6e-10 67.4 113 41.6
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 9.9e-10 67.0 97 46.4
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 9.9e-10 67.0 110 41.8
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.3e-09 66.6 104 43.3
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 1.3e-09 66.6 99 41.4
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.3e-09 66.6 107 41.1
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 1.7e-09 66.2 113 42.5
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.7e-09 66.2 84 47.6
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.7e-09 66.2 108 42.6
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.2e-09 65.9 89 44.9
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 2.2e-09 65.9 112 38.4
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.2e-09 65.9 100 46.0
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.2e-09 65.9 106 42.5
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.2e-09 65.9 105 41.9
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.9e-09 65.5 105 41.9
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 2.9e-09 65.5 104 42.3
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.9e-09 65.5 89 46.1
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 3.8e-09 65.1 88 43.2
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 4.9e-09 64.7 92 42.4
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 4.9e-09 64.7 107 43.9
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 6.4e-09 64.3 81 44.4
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 6.4e-09 64.3 95 42.1
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 6.4e-09 64.3 86 44.2
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.1e-08 63.5 97 44.3
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.4e-08 63.2 89 42.7
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.9e-08 62.8 87 43.7
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 2.4e-08 62.4 88 46.6
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 2.4e-08 62.4 88 46.6
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.2e-08 62.0 97 44.3
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 3.2e-08 62.0 94 43.6
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.1e-08 61.6 97 43.3
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.1e-08 61.6 86 45.3
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.1e-08 61.6 92 41.3
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.4e-08 61.2 97 43.3
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 9.2e-08 60.5 98 40.8
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 9.2e-08 60.5 113 38.1
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 9.2e-08 60.5 97 44.3
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 9.2e-08 60.5 107 43.0
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 9.2e-08 60.5 88 42.0
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-07 60.1 99 42.4
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-07 60.1 98 43.9
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.2e-07 60.1 99 42.4
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.2e-07 60.1 97 44.3
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.2e-07 60.1 100 44.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.2e-07 60.1 108 38.9
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.2e-07 60.1 92 41.3
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 2.1e-07 59.3 98 43.9
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.1e-07 59.3 87 42.5
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.5e-07 58.5 103 42.7
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 4.6e-07 58.2 97 41.2
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 4.6e-07 58.2 93 40.9
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.6e-07 58.2 104 39.4
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 6.0e-07 57.8 99 38.4
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 6.0e-07 57.8 130 33.1
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 7.8e-07 57.4 80 47.5
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.0e-06 57.0 93 39.8
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.0e-06 57.0 102 43.1
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 2.3e-06 55.8 115 34.8
BcaC01g03387 Brassica carinata HOM05D037847 ORTHO05D032416 2.3e-06 55.8 57 54.4
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.0e-06 55.5 139 35.3
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.0e-06 55.5 139 35.3
C03p53040 Brassica napus HOM05D037847 ORTHO05D032416 3.9e-06 55.1 57 52.6
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 3.9e-06 55.1 87 43.7
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.9e-06 55.1 108 38.9
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.6e-06 54.3 107 39.3
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.6e-06 54.3 108 41.7


User provided reference genes

Program Settings