Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G41680 Arabidopsis lyrata HOM05D002768 ORTHO05D002993 3.7e-17 90.5 47 100.0
AT4G14455 Arabidopsis thaliana HOM05D002768 ORTHO05D002993 1.1e-16 89.0 47 97.9
Sp7g12540 Schrenkiella parvula HOM05D002768 ORTHO05D002993 3.1e-16 87.4 47 93.6
BcaB04g18223 Brassica carinata HOM05D002768 ORTHO05D002993 4.1e-16 87.0 47 93.6
Thhalv10026530m.g Eutrema salsugineum HOM05D002768 ORTHO05D002993 7.0e-16 86.3 47 93.6
BcaC07g37818 Brassica carinata HOM05D002768 ORTHO05D002993 9.1e-16 85.9 47 91.5
BolC8t48206H Brassica oleracea HOM05D002768 ORTHO05D002993 9.1e-16 85.9 47 91.5
BraA08t33106Z Brassica rapa HOM05D002768 ORTHO05D002993 9.1e-16 85.9 47 91.5
THA.LOC104822247 Tarenaya hassleriana HOM05D002768 ORTHO05D002993 2.1e-12 74.7 47 76.6
A08p11120 Brassica napus HOM05D002768 ORTHO05D002993 1.0e-11 72.4 39 89.7
Aa31LG9G2840 Aethionema arabicum HOM05D002768 ORTHO05D002993 2.3e-11 71.2 39 87.2
ECA233G0123 Erigeron canadensis HOM05D002768 ORTHO05D002993 6.3e-09 63.2 43 67.4
SGA_v2.0_scaffold308G48098 Striga asiatica HOM05D002768 ORTHO05D002993 8.3e-09 62.8 43 67.4
Thecc.04G249500 Theobroma cacao HOM05D002768 ORTHO05D002993 8.3e-09 62.8 47 63.8
TWI53G0410 Tripterygium wilfordii HOM05D002768 ORTHO05D002993 8.3e-09 62.8 43 67.4
TWI53G0514 Tripterygium wilfordii HOM05D002768 ORTHO05D002993 8.3e-09 62.8 43 67.4
Duzib052G1024 Durio zibethinus HOM05D002768 ORTHO05D002993 1.1e-08 62.4 46 63.0
Duzib212G0529 Durio zibethinus HOM05D002768 ORTHO05D002993 1.1e-08 62.4 47 61.7
Gohir.D09G226400 Gossypium hirsutum HOM05D002768 ORTHO05D002993 1.1e-08 62.4 47 63.8
Duzib151G1077 Durio zibethinus HOM05D002768 ORTHO05D002993 1.4e-08 62.0 47 66.0
Gorai.006G248000 Gossypium raimondii HOM05D002768 ORTHO05D002993 1.4e-08 62.0 47 63.8
CAN.G793.3 Capsicum annuum HOM05D002768 ORTHO05D002993 2.4e-08 61.2 43 65.1
COL.COLO4_15824 Corchorus olitorius HOM05D002768 ORTHO05D002993 2.4e-08 61.2 47 61.7
Potri.010G074100 Populus trichocarpa HOM05D002768 ORTHO05D002993 5.4e-08 60.1 45 60.0
Solyc09g089630.3 Solanum lycopersicum HOM05D002768 ORTHO05D002993 7.0e-08 59.7 43 62.8
Sopen09g032570 Solanum pennellii HOM05D002768 ORTHO05D002993 7.0e-08 59.7 43 62.8
PGSC0003DMG400017253 Solanum tuberosum HOM05D002768 ORTHO05D002993 7.0e-08 59.7 43 62.8
Peaxi162Scf00024g01616 Petunia axillaris HOM05D002768 ORTHO05D002993 1.2e-07 58.9 39 66.7
Migut.N00252 Erythranthe guttata HOM05D002768 ORTHO05D002993 2.0e-07 58.2 43 60.5
Nitab4.5_0000342g0230 Nicotiana tabacum HOM05D002768 ORTHO05D002993 2.7e-07 57.8 38 65.8
Hma1.2p1_0310F.1_g120760 Hydrangea macrophylla HOM05D002768 ORTHO05D002993 3.5e-07 57.4 44 63.6
Lsat_1_v5_gn_5_72000 Lactuca sativa HOM05D002768 ORTHO05D002993 3.5e-07 57.4 39 64.1
Nitab4.5_0007234g0030 Nicotiana tabacum HOM05D002768 ORTHO05D002993 3.5e-07 57.4 37 67.6
TPR.G15862 Trifolium pratense HOM05D002768 ORTHO05D002993 3.5e-07 57.4 43 60.5
Medtr1g044145 Medicago truncatula HOM05D002768 ORTHO05D002993 4.5e-07 57.0 43 60.5
Atru.chr4.2140 Acer truncatum HOM05D002768 ORTHO05D002993 5.9e-07 56.6 41 65.9
CSS0009501 Camellia sinensis var. sinensis HOM05D002768 ORTHO05D002993 5.9e-07 56.6 43 62.8
Glyma.10G008300 Glycine max HOM05D002768 ORTHO05D002993 5.9e-07 56.6 43 60.5
Lalb_Chr03g0037081 Lupinus albus HOM05D002768 ORTHO05D002993 5.9e-07 56.6 43 60.5
MD16G1212900 Malus domestica HOM05D002768 ORTHO05D002993 5.9e-07 56.6 43 58.1
Glyma.20G087600 Glycine max HOM05D002768 ORTHO05D002993 7.7e-07 56.2 43 60.5
QL06p016605 Quercus lobata HOM05D002768 ORTHO05D002993 7.7e-07 56.2 43 62.8
Lj6g0019280 Lotus japonicus HOM05D002768 ORTHO05D002993 1.0e-06 55.8 43 60.5
MD13G1210000 Malus domestica HOM05D002768 ORTHO05D002993 1.7e-06 55.1 43 58.1
Actinidia40069 Actinidia chinensis HOM05D002768 ORTHO05D002993 2.2e-06 54.7 43 60.5
EL10Ac3g05908 Beta vulgaris HOM05D002768 ORTHO05D002993 2.2e-06 54.7 43 55.8
Ciclev10006204m.g Citrus clementina HOM05D002768 ORTHO05D002993 2.2e-06 54.7 41 61.0
Manes.03G167200 Manihot esculenta HOM05D002768 ORTHO05D002993 2.9e-06 54.3 47 53.2
PGR031G3610 Punica granatum HOM05D002768 ORTHO05D002993 2.9e-06 54.3 43 58.1
PGR048G0003 Punica granatum HOM05D002768 ORTHO05D002993 2.9e-06 54.3 43 58.1
CsaV3_3G023820 Cucumis sativus L. HOM05D002768 ORTHO05D002993 5.0e-06 53.5 43 58.1
Dinv44655 Davidia involucrata HOM05D000816 ORTHO05D005265 5.0e-06 53.5 43 60.5
Phvul.007G271900 Phaseolus vulgaris HOM05D002768 ORTHO05D002993 5.0e-06 53.5 43 55.8
Sed0005455 Sechium edule HOM05D002768 ORTHO05D002993 5.0e-06 53.5 43 58.1
PGR031G1335 Punica granatum HOM05D002768 ORTHO05D002993 6.5e-06 53.1 43 55.8
Sc25g0004060 Simmondsia chinensis HOM05D002768 ORTHO05D002993 8.5e-06 52.8 39 56.4
vmacro08445 Vaccinium macrocarpon HOM05D002768 ORTHO05D002993 8.5e-06 52.8 43 51.2


User provided reference genes

Program Settings