Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 2.8e-296 1021.1 513 100.0
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 1.1e-258 896.3 509 90.0
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 3.1e-242 841.6 489 84.9
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 2.1e-230 802.4 489 82.0
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 4.1e-226 788.1 493 82.2
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 3.9e-221 771.5 515 75.7
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 4.8e-219 764.6 445 82.9
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 2.4e-218 762.3 445 82.7
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 3.1e-218 761.9 458 82.1
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 1.0e-216 756.9 445 81.6
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 2.2e-216 755.7 445 81.3
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.1e-214 749.2 462 80.7
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 1.4e-194 683.3 513 72.1
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 1.4e-194 683.3 513 72.1
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 1.7e-187 659.8 512 66.4
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 9.5e-167 590.9 480 61.9
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 4.4e-164 582.0 483 61.5
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 2.9e-163 579.3 460 61.3
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.4e-162 577.0 469 61.8
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 2.4e-162 576.2 506 58.3
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 4.1e-162 575.5 509 58.5
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 5.4e-162 575.1 460 62.4
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 2.7e-161 572.8 455 62.4
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.0e-160 570.9 455 62.0
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 8.6e-160 567.8 476 60.1
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 2.5e-159 566.2 459 62.3
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 6.2e-158 561.6 520 55.4
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 1.1e-157 560.8 482 57.7
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 1.4e-157 560.5 481 60.1
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 2.3e-157 559.7 455 61.1
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.1e-157 559.3 488 57.6
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 5.2e-157 558.5 478 58.2
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 6.8e-157 558.1 470 58.9
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 7.6e-156 554.7 481 56.8
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 8.4e-155 551.2 460 58.3
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 1.1e-154 550.8 480 57.5
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 3.2e-154 549.3 459 60.6
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 1.6e-153 547.0 462 58.2
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 3.5e-153 545.8 452 60.6
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 3.0e-152 542.7 480 58.1
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 6.6e-152 541.6 453 58.3
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 1.5e-151 540.4 473 57.5
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 7.3e-151 538.1 457 58.6
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 1.6e-150 537.0 451 59.2
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 1.2e-148 530.8 476 55.5
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 2.6e-148 529.6 459 55.8
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 3.4e-148 529.3 450 57.6
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 7.6e-148 528.1 473 56.2
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 2.9e-147 526.2 450 58.4
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 3.8e-147 525.8 459 57.1
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 6.4e-147 525.0 473 55.8
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 6.4e-147 525.0 456 54.8
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 1.1e-146 524.2 498 54.8
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 1.4e-146 523.9 458 55.7
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 2.4e-146 523.1 459 56.9
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 2.4e-146 523.1 455 57.8
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 5.4e-146 521.9 473 55.8
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 5.4e-146 521.9 457 56.9
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 5.4e-146 521.9 490 52.9
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 2.5e-143 513.1 456 56.8
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 9.6e-143 511.1 466 54.7
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.3e-142 510.8 464 54.7
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 2.1e-142 510.0 466 54.7
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 6.2e-142 508.4 437 54.9
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.1e-141 507.7 471 52.4
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 1.8e-141 506.9 488 52.0
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 2.4e-141 506.5 456 56.6
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 5.3e-141 505.4 456 53.5
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 1.2e-140 504.2 488 51.4
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 4.4e-140 502.3 460 54.8
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 1.3e-139 500.7 460 54.6
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 2.2e-139 500.0 472 53.4
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 3.8e-139 499.2 450 56.4
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 6.4e-139 498.4 385 64.7
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 1.1e-138 497.7 473 53.1
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 4.2e-138 495.7 501 49.9
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 1.2e-137 494.2 486 49.8
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 1.3e-136 490.7 456 52.4
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 5.1e-136 488.8 472 53.0
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 2.5e-135 486.5 455 53.2
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 5.6e-135 485.3 461 51.8
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 8.1e-134 481.5 459 53.2
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 1.2e-132 477.6 468 53.8
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.2e-129 467.6 459 53.6
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 2.6e-124 449.9 457 49.0
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.6e-121 440.7 458 51.3
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 2.8e-118 429.9 427 52.7
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 1.1e-117 427.9 467 45.6
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 9.0e-117 424.9 347 59.7
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 1.4e-114 417.5 507 53.5
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 4.2e-114 416.0 342 59.6
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 2.8e-110 403.3 366 55.7
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 2.5e-106 390.2 453 42.6
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 9.4e-106 388.3 469 46.9
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 1.0e-104 384.8 360 53.3
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 5.3e-101 372.5 453 42.6
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 7.7e-100 368.6 403 49.6
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.3e-99 367.9 507 41.6
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 2.1e-97 360.5 485 40.2
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 7.9e-97 358.6 460 42.8
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 4.8e-94 349.4 375 48.5
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 1.4e-93 347.8 210 81.4
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 2.0e-92 344.0 471 39.1
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 8.0e-89 332.0 364 48.6
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.6e-87 327.0 289 55.4
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 2.2e-86 323.9 441 42.2
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 6.3e-86 322.4 443 41.3
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 2.7e-84 317.0 308 50.0
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 1.3e-83 314.7 360 46.9
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 3.5e-76 290.0 417 37.2
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.6e-73 281.2 241 58.9
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.8e-61 241.1 196 63.3
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 2.4e-61 240.7 177 66.1
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 1.2e-60 238.4 318 38.4
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 3.6e-57 226.9 124 82.3
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 6.2e-57 226.1 219 52.1
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 5.8e-55 219.5 248 43.1
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 8.3e-54 215.7 167 59.3
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 7.8e-44 182.6 145 59.3
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 3.0e-43 180.6 175 54.3
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 6.0e-28 129.8 145 42.8
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 1.6e-20 105.1 130 46.2
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 9.6e-18 95.9 65 61.5
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 3.1e-08 64.3 79 39.2
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 5.3e-08 63.5 73 45.2
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 8.4e-06 56.2 145 29.0


User provided reference genes

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