Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.7e-174 615.9 313 100.0
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 7.6e-135 484.2 312 82.7
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 5.0e-134 481.5 310 82.9
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 2.7e-132 475.7 316 81.6
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 4.6e-132 474.9 310 83.9
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 6.7e-131 471.1 313 82.1
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 2.5e-125 452.6 315 80.6
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 2.0e-122 443.0 320 76.9
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 2.8e-121 439.1 315 76.8
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 4.8e-121 438.3 321 76.6
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 5.3e-120 434.9 310 77.1
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 2.2e-118 429.5 317 75.4
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 7.2e-117 424.5 318 75.2
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 2.7e-116 422.5 311 75.6
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 1.8e-107 393.3 308 74.4
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 1.3e-105 387.1 312 73.7
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 1.3e-102 377.1 312 72.8
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 2.2e-102 376.3 305 73.1
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 2.5e-101 372.9 338 68.0
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 1.8e-96 356.7 336 63.1
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 4.1e-96 355.5 257 75.5
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 6.8e-91 338.2 335 61.2
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 2.3e-83 313.2 345 56.5
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 3.1e-75 286.2 299 59.2
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 4.6e-63 245.7 338 47.6
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 1.6e-60 237.3 335 46.9
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 3.6e-60 236.1 300 49.7
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 1.1e-59 234.6 343 46.6
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 2.0e-58 230.3 338 44.4
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 9.9e-58 228.0 344 46.2
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 1.7e-57 227.3 337 47.2
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.9e-57 226.5 325 47.4
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 6.4e-57 225.3 331 47.1
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 6.4e-57 225.3 325 47.1
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 1.1e-56 224.6 329 44.7
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 2.4e-56 223.4 330 44.8
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 4.2e-56 222.6 344 44.5
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 2.1e-55 220.3 322 46.3
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 7.8e-55 218.4 356 43.3
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 1.5e-53 214.2 325 44.9
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 1.9e-53 213.8 316 44.3
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.2e-52 211.1 262 48.1
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 9.0e-51 204.9 339 43.4
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 9.0e-51 204.9 334 43.4
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 1.2e-50 204.5 329 42.9
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 2.0e-50 203.8 282 48.2
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 3.4e-50 203.0 302 45.7
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 4.4e-50 202.6 329 43.8
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 5.8e-50 202.2 329 42.6
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.8e-50 202.2 349 43.6
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 9.9e-50 201.4 326 42.3
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 9.9e-50 201.4 342 43.0
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 1.3e-49 201.1 333 42.3
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 3.8e-49 199.5 335 42.1
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 4.9e-49 199.1 350 43.4
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 4.9e-49 199.1 343 42.9
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 6.4e-49 198.7 333 42.0
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 8.4e-49 198.4 266 46.6
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 1.4e-48 197.6 349 41.8
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.4e-48 195.7 351 43.0
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 5.4e-48 195.7 330 42.7
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 7.8e-47 191.8 332 42.2
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 1.3e-46 191.0 331 41.7
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 3.0e-46 189.9 337 40.4
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 3.9e-46 189.5 337 40.7
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 1.5e-45 187.6 267 46.8
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 1.9e-45 187.2 334 41.9
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.9e-45 187.2 263 44.9
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 1.9e-45 187.2 341 40.2
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 3.3e-45 186.4 263 44.9
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 5.6e-45 185.7 312 42.0
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 7.3e-45 185.3 326 42.6
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 1.6e-44 184.1 325 41.2
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 3.6e-44 183.0 309 41.4
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.1e-43 181.4 325 40.3
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.4e-43 181.0 353 39.4
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.8e-43 180.6 342 39.8
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 9.0e-43 178.3 331 38.1
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 9.0e-43 178.3 323 38.4
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 2.6e-42 176.8 310 40.0
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 9.9e-42 174.9 331 39.3
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 9.9e-42 174.9 336 39.0
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 9.9e-42 174.9 348 37.4
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 3.8e-41 172.9 335 37.6
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 8.4e-41 171.8 273 43.2
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.4e-40 170.2 348 36.8
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 5.4e-40 169.1 337 40.4
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 7.1e-40 168.7 331 38.7
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 7.1e-40 168.7 338 38.8
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 9.3e-40 168.3 294 39.1
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 1.2e-39 167.9 267 42.7
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 3.5e-39 166.4 262 42.4
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 4.6e-39 166.0 184 53.3
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 1.0e-38 164.9 336 37.8
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.8e-38 164.1 331 37.2
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 2.3e-38 163.7 269 40.9
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 2.3e-38 163.7 327 37.3
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.0e-38 163.3 335 37.9
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 3.9e-38 162.9 342 35.4
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 3.9e-38 162.9 352 35.8
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.9e-38 162.9 334 37.7
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 3.9e-38 162.9 267 42.3
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 8.7e-38 161.8 268 41.0
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.9e-37 160.6 325 37.2
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 2.5e-37 160.2 339 37.8
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 5.6e-37 159.1 326 36.2
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 1.6e-36 157.5 274 40.9
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.6e-36 157.5 270 40.7
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.6e-36 157.5 318 37.7
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 3.7e-36 156.4 288 38.5
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 3.7e-36 156.4 356 34.3
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 4.8e-36 156.0 331 35.3
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 1.1e-35 154.8 295 38.3
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.4e-35 154.5 274 41.6
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 4.0e-35 152.9 323 35.9
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 4.0e-35 152.9 295 36.9
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 1.2e-34 151.4 304 37.8
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 1.2e-34 151.4 272 41.2
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 1.5e-34 151.0 301 36.9
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 2.0e-34 150.6 262 37.8
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 4.5e-34 149.4 318 35.2
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 7.6e-34 148.7 185 48.1
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 7.6e-34 148.7 306 34.6
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.0e-33 148.3 264 37.5
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 1.3e-33 147.9 259 40.2
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 1.3e-33 147.9 190 46.8
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 1.4e-32 144.4 190 45.3
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 2.5e-32 143.7 353 35.4
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 5.5e-32 142.5 302 36.8
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 6.0e-31 139.0 193 44.0
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 7.9e-31 138.7 185 44.3
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.0e-30 138.3 276 38.8
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 5.1e-30 136.0 416 31.2
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 8.7e-30 135.2 322 34.8
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.5e-26 124.4 266 36.5
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 2.6e-26 123.6 284 34.5
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 1.3e-25 121.3 327 32.1
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.2e-25 120.6 227 40.5
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 9.3e-24 115.2 277 34.7
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 9.3e-24 115.2 294 29.9
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 1.8e-22 110.9 244 39.3
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 5.1e-22 109.4 206 38.8
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 4.3e-21 106.3 172 40.7
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 1.4e-19 101.3 92 58.7
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 2.6e-18 97.1 85 57.6
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 1.0e-17 95.1 216 37.0
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 2.9e-17 93.6 153 41.8
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 2.9e-17 93.6 236 32.2
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 1.9e-16 90.9 76 60.5
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.9e-16 90.9 249 31.7
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 1.9e-16 90.9 275 29.8
BcaC07g37844 Brassica carinata HOM05D004643 ORTHO05D005535 2.7e-15 87.0 97 60.8
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 4.1e-11 73.2 55 61.8
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 5.3e-11 72.8 141 34.8
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 8.5e-09 65.5 213 29.1
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 4.2e-08 63.2 90 41.1
PSO724G1109 Papaver somniferum HOM05D001047 ORTHO05D000768 2.7e-07 60.5 99 39.4
PSO386G0059 Papaver somniferum HOM05D001047 ORTHO05D000768 3.6e-07 60.1 99 39.4
Manes.03G055200 Manihot esculenta HOM05D001047 ORTHO05D000768 1.4e-06 58.2 214 29.4
Sabra06G0167500 Salix brachista HOM05D001047 ORTHO05D000768 1.8e-06 57.8 149 30.9
Potri.006G217200 Populus trichocarpa HOM05D001047 ORTHO05D000768 2.3e-06 57.4 161 29.2
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 3.9e-06 56.6 60 50.0
Eucgr.C00753 Eucalyptus grandis HOM05D001047 ORTHO05D000768 3.9e-06 56.6 226 30.5
Potri.018G047100 Populus trichocarpa HOM05D001047 ORTHO05D000768 3.9e-06 56.6 150 30.0


User provided reference genes

Program Settings