Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 2857.0 1480 100.0
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 2677.9 1480 94.1
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 2442.5 1485 86.7
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 2418.3 1487 85.9
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 2412.5 1501 85.1
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 2411.7 1462 86.4
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 2404.4 1462 86.0
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 2404.0 1485 85.5
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1586.2 1477 58.3
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1585.9 1463 60.1
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1575.8 1449 60.1
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1575.1 1458 59.5
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1572.8 1476 58.7
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1572.4 1483 58.9
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1565.8 1465 58.8
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1564.7 1457 58.8
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1557.7 1463 58.0
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1555.8 1437 59.6
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1553.1 1504 57.5
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1529.2 1467 57.7
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1526.5 1480 57.5
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1525.4 1464 57.2
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1525.0 1431 58.4
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1524.2 1472 57.3
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1520.8 1480 57.6
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1508.8 1463 57.8
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1503.8 1470 57.7
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1501.1 1391 58.9
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1500.3 1445 57.1
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1494.9 1482 55.9
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1490.3 1371 59.4
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1435.6 1477 54.5
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1425.6 1512 53.8
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1423.3 1473 53.7
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1401.3 1467 54.1
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1396.3 1421 54.3
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1387.5 1468 52.8
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1387.5 1476 52.6
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1381.7 1476 52.6
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1380.9 1461 52.5
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1370.9 1468 51.8
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1369.0 1464 51.6
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1367.4 1460 53.2
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1367.1 1504 51.3
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1359.7 1459 52.5
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1350.1 1512 51.6
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1291.2 1510 49.3
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1286.2 1454 49.7
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1279.2 1222 57.9
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1269.6 1472 51.1
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1230.3 1571 46.2
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1228.8 1493 47.8
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1224.5 1349 52.0
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1220.7 1528 47.6
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1137.9 1353 49.4
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 1.3e-293 1013.8 1265 46.0
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 3.4e-281 972.6 1227 48.2
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.1e-268 931.0 1240 43.9
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 9.5e-268 927.9 764 64.0
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 8.3e-264 914.8 1054 48.6
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 4.3e-260 902.5 975 53.3
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 4.3e-260 902.5 1500 39.5
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 9.5e-260 901.4 1450 38.3
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 1.6e-251 874.0 974 52.1
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.1e-244 851.3 934 52.5
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.1e-207 728.4 405 92.3
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 3.7e-195 686.8 561 65.8
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.8e-189 667.9 678 52.8
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 2.6e-188 664.1 1212 36.2
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 7.2e-175 619.4 546 59.0
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.2e-158 565.5 324 88.6
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 4.9e-155 553.5 635 50.4
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 3.9e-144 517.3 1001 33.6
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 2.1e-142 511.5 749 42.2
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 9.0e-101 373.2 700 37.6
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.3e-96 359.4 198 93.9
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.9e-79 302.4 207 81.2
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 1.7e-67 262.7 256 55.5
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.7e-67 262.7 216 61.1
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.2e-65 256.5 157 85.4
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-46 193.4 235 45.1
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 6.3e-46 191.0 125 72.8
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.4e-45 189.9 241 46.5
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 2.5e-42 179.1 149 63.1
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 1.5e-39 169.9 131 62.6
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 7.5e-39 167.5 110 86.4
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 7.0e-37 161.0 121 66.9
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 9.2e-29 134.0 217 38.2
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 3.1e-24 119.0 88 67.0
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 2.2e-22 112.8 113 44.2
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 2.4e-21 109.4 113 43.4
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 2.4e-21 109.4 113 43.4
AL3G45770 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 4.3e-18 98.6 66 92.4
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 2.8e-17 95.9 213 34.3
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 3.6e-17 95.5 81 61.7
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 3.5e-12 79.0 51 76.5
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 6.0e-12 78.2 119 42.9
C03p18330 Brassica napus HOM05D007170 ORTHO05D041508 1.6e-09 70.1 35 94.3
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 1.6e-09 70.1 134 37.3
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 6.8e-08 64.7 99 37.4
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 1.2e-07 63.9 40 75.0
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 9.9e-07 60.8 111 35.1
CDE07G0977 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 3.8e-06 58.9 89 39.3
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 6.4e-06 58.2 45 62.2


User provided reference genes

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