Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 8.5e-213 743.4 379 100.0
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 2.6e-206 721.8 379 96.3
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 5.5e-204 714.1 379 95.5
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 4.7e-203 711.1 379 95.0
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 1.6e-198 696.0 379 93.4
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 7.2e-196 687.2 380 91.3
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 3.6e-195 684.9 380 90.8
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 4.7e-195 684.5 380 91.1
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 8.0e-195 683.7 380 91.1
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 8.0e-195 683.7 380 91.1
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 1.8e-194 682.6 380 91.1
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.2e-190 669.8 381 90.0
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 6.5e-181 637.5 379 85.8
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 6.4e-168 594.3 379 76.5
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 3.8e-144 515.4 379 66.8
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 3.9e-141 505.4 379 62.5
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 2.5e-140 502.7 376 64.6
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 9.6e-140 500.7 379 62.0
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 1.2e-139 500.4 376 63.3
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 3.6e-139 498.8 379 63.9
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 4.7e-139 498.4 379 62.3
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 8.1e-139 497.7 375 64.3
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 1.8e-138 496.5 379 62.0
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.1e-138 495.7 378 64.0
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 9.0e-138 494.2 361 66.5
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 4.4e-137 491.9 379 63.1
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 7.6e-137 491.1 376 62.5
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 7.6e-137 491.1 376 63.3
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 9.9e-137 490.7 376 62.5
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 1.3e-136 490.3 379 60.9
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 1.7e-136 490.0 375 62.1
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 3.8e-136 488.8 376 62.5
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 4.9e-136 488.4 376 63.8
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 4.9e-136 488.4 375 63.5
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 1.4e-135 486.9 379 62.8
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 1.9e-135 486.5 376 63.6
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 1.9e-135 486.5 376 62.5
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 2.4e-135 486.1 377 63.7
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 3.2e-135 485.7 376 61.7
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 3.2e-135 485.7 379 62.3
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 4.2e-135 485.3 376 63.6
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 5.4e-135 485.0 375 62.9
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 9.3e-135 484.2 376 61.4
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 1.2e-134 483.8 379 62.3
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 6.0e-134 481.5 375 62.9
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 6.0e-134 481.5 373 63.3
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 1.3e-133 480.3 429 57.3
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 1.5e-132 476.9 376 62.0
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 2.5e-132 476.1 379 62.0
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 1.6e-131 473.4 375 61.6
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 4.8e-131 471.9 375 61.3
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.1e-130 469.2 375 61.1
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.1e-130 469.2 375 61.1
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 3.4e-129 465.7 379 59.6
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 9.9e-129 464.2 376 60.9
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 3.8e-128 462.2 375 61.6
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 1.4e-127 460.3 378 59.8
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 4.2e-127 458.8 385 59.2
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 7.1e-127 458.0 380 58.9
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 2.1e-126 456.4 380 58.2
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 3.5e-126 455.7 376 58.8
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 4.6e-126 455.3 376 58.5
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 7.9e-126 454.5 378 59.3
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 2.3e-125 453.0 379 58.3
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 3.0e-125 452.6 377 61.3
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 1.9e-124 449.9 376 59.6
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 1.9e-124 449.9 375 58.1
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 1.9e-124 449.9 380 57.6
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 1.9e-124 449.9 380 57.9
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 2.5e-124 449.5 379 58.0
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 4.3e-124 448.7 378 58.2
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 5.6e-124 448.4 380 57.6
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 1.6e-123 446.8 375 57.6
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 1.8e-122 443.4 375 58.7
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 3.1e-122 442.6 406 56.2
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 5.3e-122 441.8 373 57.1
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 2.9e-120 436.0 373 57.4
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 2.4e-119 433.0 375 57.3
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 4.6e-118 428.7 375 55.7
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 6.7e-117 424.9 375 55.7
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 1.9e-116 423.3 366 57.9
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 4.3e-116 422.2 375 57.6
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 2.2e-112 409.8 376 54.3
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 3.8e-112 409.1 427 49.4
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 1.1e-111 407.5 398 52.5
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 5.5e-111 405.2 379 55.1
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 2.1e-110 403.3 379 53.3
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 8.7e-109 397.9 371 53.9
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 5.7e-108 395.2 375 53.1
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.1e-106 391.0 375 52.8
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 6.1e-102 375.2 386 51.6
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 1.3e-99 367.5 314 56.4
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 4.2e-95 352.4 266 63.2
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 8.8e-93 344.7 374 48.1
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 9.1e-90 334.7 376 44.4
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 1.1e-82 311.2 268 57.1
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 4.1e-82 309.3 406 44.8
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 3.2e-79 299.7 276 54.3
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 8.2e-75 285.0 367 41.4
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 1.2e-73 281.2 223 70.0
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 1.2e-73 281.2 223 70.0
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 3.8e-72 276.2 191 64.9
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 1.7e-67 260.8 369 38.5
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.7e-64 250.8 271 48.7
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.2e-62 244.6 169 73.4
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 4.0e-61 239.6 124 95.2
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 9.8e-60 235.0 140 84.3
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 9.5e-55 218.4 119 87.4
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 1.5e-52 211.1 379 41.7
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.3e-43 181.4 166 57.8
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 1.0e-40 171.8 135 63.7
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 4.4e-36 156.4 121 61.2
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 4.9e-27 126.3 154 44.2
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 9.2e-26 122.1 117 54.7
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 7.8e-25 119.0 110 53.6
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 1.9e-18 97.8 117 51.3
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 2.3e-16 90.9 352 24.4
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 3.4e-12 77.0 82 50.0
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 4.9e-11 73.2 51 62.7
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 2.4e-10 70.9 45 68.9
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.5e-09 67.0 71 49.3
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 6.0e-09 66.2 51 54.9
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 7.9e-09 65.9 113 39.8
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 1.0e-08 65.5 70 48.6
Potri.010G121500 Populus trichocarpa HOM05D001367 ORTHO05D002514 1.0e-08 65.5 295 23.7
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.3e-08 65.1 45 64.4
CDE08G1644 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 1.3e-08 65.1 52 55.8
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.3e-08 65.1 53 62.3
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 1.8e-08 64.7 93 43.0
FAN17G2912 Fragaria x ananassa HOM05D001367 ORTHO05D002514 5.1e-08 63.2 125 31.2
FvH4_4g26870 Fragaria vesca HOM05D001367 ORTHO05D002514 8.7e-08 62.4 125 32.0
FAN22G1468 Fragaria x ananassa HOM05D001367 ORTHO05D002514 8.7e-08 62.4 125 31.2
FAN07G1967 Fragaria x ananassa HOM05D001367 ORTHO05D002514 1.1e-07 62.0 125 31.2
unitig_747.g21455 Utricularia gibba HOM05D000883 ORTHO05D002942 1.1e-07 62.0 132 30.3
RcHm_v2.0_Chr4g0434631 Rosa chinensis HOM05D001367 ORTHO05D002514 1.5e-07 61.6 125 31.2
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 2.5e-07 60.8 127 29.9
FAN12G1244 Fragaria x ananassa HOM05D001367 ORTHO05D002514 2.5e-07 60.8 125 31.2
FAN12G3035 Fragaria x ananassa HOM05D001367 ORTHO05D002514 2.5e-07 60.8 125 31.2
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 3.3e-07 60.5 46 56.5
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 3.3e-07 60.5 74 45.9
TAR623G0958 Trochodendron aralioides HOM05D000883 ORTHO05D002942 4.3e-07 60.1 132 31.8
Actinidia34477 Actinidia chinensis HOM05D000883 ORTHO05D002942 5.6e-07 59.7 130 34.6
Ciclev10028816m.g Citrus clementina HOM05D000883 ORTHO05D002942 5.6e-07 59.7 123 30.9
Eucgr.B02821 Eucalyptus grandis HOM05D001367 ORTHO05D002514 9.6e-07 58.9 126 32.5
Eucgr.B02991 Eucalyptus grandis HOM05D001367 ORTHO05D002514 1.3e-06 58.5 126 32.5
Mapoly0002s0289 Marchantia polymorpha HOM05D000177 ORTHO05D003047 1.6e-06 58.2 125 30.4
TAR636G0809 Trochodendron aralioides HOM05D000883 ORTHO05D002942 1.6e-06 58.2 132 31.1
MELO3C003174.2 Cucumis melo HOM05D000177 ORTHO05D002752 2.1e-06 57.8 115 29.6
Glyma.07G139000 Glycine max HOM05D000177 ORTHO05D002752 2.1e-06 57.8 127 29.9
Manes.08G096000 Manihot esculenta HOM05D000883 ORTHO05D002942 2.1e-06 57.8 133 30.1
VMungo1383G2682 Vigna mungo HOM05D000177 ORTHO05D002752 2.1e-06 57.8 140 29.3
TWI79G0402 Tripterygium wilfordii HOM05D001367 ORTHO05D002514 3.7e-06 57.0 129 28.7
BcaB04g18277 Brassica carinata HOM05D001003 ORTHO05D002734 4.8e-06 56.6 37 78.4
QL01p040318 Quercus lobata HOM05D001367 ORTHO05D002514 4.8e-06 56.6 154 29.2
Rhsim04G0163000 Rhododendron simsii HOM05D000177 ORTHO05D002752 4.8e-06 56.6 138 26.1
SMO356G0048 Selaginella moellendorffii HOM05D001142 ORTHO05D004628 4.8e-06 56.6 376 22.1
ClCG01G005850 Citrullus lanatus HOM05D001367 ORTHO05D002514 6.2e-06 56.2 312 22.8
CsaV3_5G008450 Cucumis sativus L. HOM05D000177 ORTHO05D002752 6.2e-06 56.2 128 28.9
Zm00001eb285930 Zea mays HOM05D001367 ORTHO05D002514 6.2e-06 56.2 133 28.6
Cc06_g02130 Coffea canephora HOM05D000177 ORTHO05D002752 8.1e-06 55.8 124 28.2
MD13G1036400 Malus domestica HOM05D001367 ORTHO05D002514 8.1e-06 55.8 126 30.2
Potri.016G103300 Populus trichocarpa HOM05D000177 ORTHO05D002752 8.1e-06 55.8 142 28.9
Thecc.01G307000 Theobroma cacao HOM05D001367 ORTHO05D002514 8.1e-06 55.8 129 30.2


User provided reference genes

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