Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G40560 Arabidopsis lyrata HOM05D006473 ORTHO05D008108 4.9e-80 301.2 168 100.0
AT4G15140 Arabidopsis thaliana HOM05D006473 ORTHO05D008108 8.4e-72 273.9 166 89.8
Carub.0007s2685 Capsella rubella HOM05D006473 ORTHO05D008108 1.3e-64 250.0 170 78.8
BraA05t20604Z Brassica rapa HOM05D006473 ORTHO05D008108 2.5e-60 235.7 165 72.1
C06p16570 Brassica napus HOM05D006473 ORTHO05D008108 1.3e-59 233.4 165 71.5
BolC6t36859H Brassica oleracea HOM05D006473 ORTHO05D008108 1.3e-59 233.4 165 71.5
BcaC08g44251 Brassica carinata HOM05D006473 ORTHO05D008108 3.7e-59 231.9 165 70.9
A05p16970 Brassica napus HOM05D006473 ORTHO05D008108 3.7e-59 231.9 165 70.9
Thhalv10027487m.g Eutrema salsugineum HOM05D006473 ORTHO05D008108 1.4e-58 229.9 167 79.6
CARHR221880 Cardamine hirsuta HOM05D006473 ORTHO05D008108 1.5e-57 226.5 172 75.6
Sp7g13370 Schrenkiella parvula HOM05D006473 ORTHO05D008108 1.5e-57 226.5 170 70.6
BcaB02g07838 Brassica carinata HOM05D006473 ORTHO05D008108 2.2e-56 222.6 150 72.0
BcaC07g37876 Brassica carinata HOM05D006473 ORTHO05D008108 1.8e-53 213.0 154 71.4
BolC8t48269H Brassica oleracea HOM05D006473 ORTHO05D008108 1.8e-53 213.0 154 71.4
A08p11670 Brassica napus HOM05D006473 ORTHO05D008108 5.1e-53 211.5 154 70.8
BraA08t33161Z Brassica rapa HOM05D006473 ORTHO05D008108 5.1e-53 211.5 154 70.8
BcaB04g18284 Brassica carinata HOM05D006473 ORTHO05D008108 2.9e-48 195.7 154 66.9
Aa31LG9G2250 Aethionema arabicum HOM05D006473 ORTHO05D008108 2.2e-43 179.5 157 72.0
THA.LOC104808506 Tarenaya hassleriana HOM05D006473 ORTHO05D008108 1.4e-37 160.2 178 51.7
FAN05G1961 Fragaria x ananassa HOM05D006473 ORTHO05D008108 1.6e-25 120.2 165 46.1
RcHm_v2.0_Chr2g0153221 Rosa chinensis HOM05D006473 ORTHO05D008108 2.7e-25 119.4 163 48.5
Duzib138G0874 Durio zibethinus HOM05D006473 ORTHO05D008108 7.7e-25 117.9 169 44.4
Thecc.01G174700 Theobroma cacao HOM05D006473 ORTHO05D008108 1.3e-24 117.1 166 45.2
COL.COLO4_19989 Corchorus olitorius HOM05D006473 ORTHO05D008108 2.2e-24 116.3 170 44.1
FvH4_6g39300 Fragaria vesca HOM05D006473 ORTHO05D008108 2.2e-24 116.3 163 45.4
CiPaw.03G109100 Carya illinoinensis HOM05D006473 ORTHO05D008108 8.5e-24 114.4 146 47.3
Prupe.3G184300 Prunus persica HOM05D006473 ORTHO05D008108 1.1e-23 114.0 166 44.0
Ciclev10012907m.g Citrus clementina HOM05D006473 ORTHO05D008108 1.9e-23 113.2 172 47.7
Potri.006G008000 Populus trichocarpa HOM05D006473 ORTHO05D008108 2.5e-23 112.8 168 51.2
MD17G1129800 Malus domestica HOM05D006473 ORTHO05D008108 3.2e-23 112.5 172 44.2
Sabra06G0006200 Salix brachista HOM05D006473 ORTHO05D008108 4.2e-23 112.1 168 40.5
Cfa023365 Carpinus fangiana HOM05D006473 ORTHO05D008108 5.5e-23 111.7 161 46.6
TWI34G1686 Tripterygium wilfordii HOM05D006473 ORTHO05D008108 5.5e-23 111.7 166 50.0
CANSAT64G1482 Cannabis sativa HOM05D006473 ORTHO05D008108 7.2e-23 111.3 168 49.4
Haze_13544 Corylus avellana HOM05D006473 ORTHO05D008108 1.2e-22 110.5 161 46.6
MD09G1143500 Malus domestica HOM05D006473 ORTHO05D008108 1.2e-22 110.5 165 43.6
Gohir.D11G162300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 1.6e-22 110.2 173 39.9
Gorai.007G172600 Gossypium raimondii HOM05D006473 ORTHO05D008108 1.6e-22 110.2 173 39.9
Gohir.A11G155300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 2.1e-22 109.8 173 39.9
QL07p025679 Quercus lobata HOM05D006473 ORTHO05D008108 2.7e-22 109.4 169 50.3
FAN09G0937 Fragaria x ananassa HOM05D006473 ORTHO05D008108 4.7e-22 108.6 172 43.0
FAN14G2613 Fragaria x ananassa HOM05D006473 ORTHO05D008108 4.7e-22 108.6 172 43.0
arahy.Tifrunner.gnm1.ann1.UN21ID Arachis hypogaea HOM05D006473 ORTHO05D008108 1.0e-21 107.5 142 43.7
Atru.chr8.1011 Acer truncatum HOM05D006473 ORTHO05D008108 3.0e-21 105.9 142 56.3
ClCG11G016910 Citrullus lanatus HOM05D006473 ORTHO05D008108 4.0e-21 105.5 159 42.1
Sabra16G0000300 Salix brachista HOM05D006473 ORTHO05D008108 4.0e-21 105.5 169 40.2
COL.COLO4_18222 Corchorus olitorius HOM05D006473 ORTHO05D008108 6.8e-21 104.8 159 42.8
arahy.Tifrunner.gnm1.ann1.ITU10B Arachis hypogaea HOM05D006473 ORTHO05D008108 8.8e-21 104.4 147 45.6
Medtr3g082070 Medicago truncatula HOM05D006473 ORTHO05D008108 8.8e-21 104.4 159 45.3
PGR031G0759 Punica granatum HOM05D006473 ORTHO05D008108 1.2e-20 104.0 163 41.7
MELO3C026363.2 Cucumis melo HOM05D006473 ORTHO05D008108 2.0e-20 103.2 153 42.5
Glyma.20G063000 Glycine max HOM05D006473 ORTHO05D008108 2.0e-20 103.2 167 42.5
Psat5g106240 Pisum sativum HOM05D006473 ORTHO05D008108 2.0e-20 103.2 154 43.5
Lj6g0005292 Lotus japonicus HOM05D006473 ORTHO05D008108 3.4e-20 102.4 168 38.7
QL10p019398 Quercus lobata HOM05D006473 ORTHO05D008108 4.4e-20 102.1 164 51.8
Glyma.13G004200 Glycine max HOM05D006473 ORTHO05D008108 5.7e-20 101.7 171 43.3
CsaV3_4G032520 Cucumis sativus L. HOM05D006473 ORTHO05D008108 9.8e-20 100.9 161 39.8
Sed0027280 Sechium edule HOM05D006473 ORTHO05D008108 1.7e-19 100.1 153 41.2
TPR.G17559 Trifolium pratense HOM05D006473 ORTHO05D008108 1.7e-19 100.1 181 41.4
VMungo0540G0033 Vigna mungo HOM05D006473 ORTHO05D008108 3.7e-19 99.0 148 43.9
Lalb_Chr17g0337141 Lupinus albus HOM05D006473 ORTHO05D008108 4.9e-19 98.6 155 41.3
Manes.08G068100 Manihot esculenta HOM05D006473 ORTHO05D008108 4.9e-19 98.6 153 51.6
Sed0014549 Sechium edule HOM05D006473 ORTHO05D008108 1.1e-18 97.4 174 41.4
QL07p027003 Quercus lobata HOM05D006473 ORTHO05D008108 2.4e-18 96.3 163 49.1
QL07p026949 Quercus lobata HOM05D006473 ORTHO05D008108 3.1e-18 95.9 163 49.7
Eucgr.A00949 Eucalyptus grandis HOM05D006473 ORTHO05D008108 4.1e-18 95.5 150 44.0
Phvul.007G120134 Phaseolus vulgaris HOM05D006473 ORTHO05D008108 5.4e-18 95.1 167 38.9
CiPaw.04G072200 Carya illinoinensis HOM05D006473 ORTHO05D008108 2.7e-17 92.8 151 41.1
PGSC0003DMG400013558 Solanum tuberosum HOM05D006473 ORTHO05D008108 2.7e-17 92.8 163 38.0
TAR626G1390 Trochodendron aralioides HOM05D006473 ORTHO05D008108 3.5e-17 92.4 139 43.9
HanXRQChr02g0035171 Helianthus annuus HOM05D006473 ORTHO05D008108 4.5e-17 92.0 166 44.6
Peaxi162Scf00393g01011 Petunia axillaris HOM05D006473 ORTHO05D008108 4.5e-17 92.0 154 37.0
TAR626G1015 Trochodendron aralioides HOM05D006473 ORTHO05D008108 4.5e-17 92.0 149 40.3
CAN.G529.20 Capsicum annuum HOM05D006473 ORTHO05D008108 5.9e-17 91.7 150 38.7
Solyc07g043070.3 Solanum lycopersicum HOM05D006473 ORTHO05D008108 5.9e-17 91.7 151 37.1
Sopen07g022630 Solanum pennellii HOM05D006473 ORTHO05D008108 5.9e-17 91.7 151 37.1
Nn7g38339 Nelumbo nucifera HOM05D006473 ORTHO05D008108 1.0e-16 90.9 130 46.9
Nitab4.5_0002292g0030 Nicotiana tabacum HOM05D006473 ORTHO05D008108 2.9e-16 89.4 147 38.1
Haze_13545 Corylus avellana HOM05D006473 ORTHO05D008108 3.8e-16 89.0 70 64.3
Lsat_1_v5_gn_1_29560 Lactuca sativa HOM05D006473 ORTHO05D008108 1.1e-15 87.4 177 36.7
Cpa.g.sc8.265 Carica papaya HOM05D006473 ORTHO05D008108 4.3e-15 85.5 165 35.8
Ca_16320_v3 Cicer arietinum L. HOM05D006473 ORTHO05D008108 1.6e-14 83.6 134 40.3
Cc00_g04870 Coffea canephora HOM05D006473 ORTHO05D008108 1.6e-14 83.6 144 41.0
ECA247G3587 Erigeron canadensis HOM05D006473 ORTHO05D008108 2.1e-14 83.2 171 36.8
Sc07g0001930 Simmondsia chinensis HOM05D006473 ORTHO05D008108 3.6e-14 82.4 143 39.9
QL07p026979 Quercus lobata HOM05D006473 ORTHO05D008108 1.0e-13 80.9 54 74.1
Nitab4.5_0011512g0010 Nicotiana tabacum HOM05D006473 ORTHO05D008108 1.8e-13 80.1 144 37.5
QL09p045725 Quercus lobata HOM05D006473 ORTHO05D008108 2.3e-13 79.7 54 72.2
Migut.H01260 Erythranthe guttata HOM05D006473 ORTHO05D008108 4.0e-13 79.0 152 38.8
CDE05G3197 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 8.9e-13 77.8 138 37.0
GSVIVG01015888001 Vitis vinifera HOM05D006473 ORTHO05D008108 1.5e-12 77.0 134 43.3
Aqoxy5G02466 Aquilegia oxysepala HOM05D006473 ORTHO05D008108 2.6e-12 76.3 130 41.5
EL10Ac6g15336 Beta vulgaris HOM05D006473 ORTHO05D008108 2.6e-12 76.3 127 38.6
vmacro08765 Vaccinium macrocarpon HOM05D006473 ORTHO05D008108 7.5e-12 74.7 161 35.4
Peaxi162Scf00322g00416 Petunia axillaris HOM05D006473 ORTHO05D008108 6.4e-11 71.6 163 34.4
Hund23023 Selenicereus undatus HOM05D006473 ORTHO05D008108 6.4e-11 71.6 156 30.1
HPP92_016064 Vanilla planifolia HOM05D006473 ORTHO05D008108 6.4e-11 71.6 44 68.2
PSO675G8005 Papaver somniferum HOM05D006473 ORTHO05D008108 1.1e-10 70.9 154 43.5
MBI02_g01129_MAGBIO Magnolia biondii HOM05D006464 ORTHO05D007923 2.4e-10 69.7 60 53.3
Nitab4.5_0000170g0320 Nicotiana tabacum HOM05D006473 ORTHO05D008108 3.2e-10 69.3 49 61.2
DCAR_029496 Daucus carota HOM05D006473 ORTHO05D008108 4.1e-10 68.9 48 64.6
QL04p064817 Quercus lobata HOM05D006473 ORTHO05D008108 4.1e-10 68.9 152 35.5
Rhsim12G0015400 Rhododendron simsii HOM05D006473 ORTHO05D008108 4.1e-10 68.9 137 34.3
CSS0026100 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 9.2e-10 67.8 44 65.9
CSS0046570 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 9.2e-10 67.8 44 65.9
Hund04387 Selenicereus undatus HOM05D006473 ORTHO05D008108 1.2e-09 67.4 142 32.4
CDE11G0296 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 7.8e-09 64.7 44 63.6
Cpa.g.sc32.52 Carica papaya HOM05D006473 ORTHO05D008108 1.3e-08 63.9 137 35.8
Actinidia32074 Actinidia chinensis HOM05D006473 ORTHO05D008108 6.6e-08 61.6 36 75.0
Actinidia12507 Actinidia chinensis HOM05D006473 ORTHO05D008108 1.1e-07 60.8 36 75.0
Os04g0504200 Oryza sativa ssp. japonica HOM05D006473 ORTHO05D008108 2.5e-07 59.7 142 31.7
Zm00001eb078060 Zea mays HOM05D006473 ORTHO05D008108 3.3e-07 59.3 43 67.4
SGA_v2.0_scaffold49G18372 Striga asiatica HOM05D006473 ORTHO05D008108 4.3e-07 58.9 133 33.1
unitig_62.g23243 Utricularia gibba HOM05D006473 ORTHO05D008108 1.6e-06 57.0 45 60.0
AUR62017858 Chenopodium quinoa HOM05D006473 ORTHO05D008108 2.1e-06 56.6 134 32.1
QL04p064939 Quercus lobata HOM05D006473 ORTHO05D008108 2.1e-06 56.6 154 34.4
ATR0763G071 Amborella trichopoda HOM05D006473 ORTHO05D008108 2.8e-06 56.2 135 32.6
Oeu027256.1 Olea europaea HOM05D006473 ORTHO05D008108 2.8e-06 56.2 30 80.0
QL05p058452 Quercus lobata HOM05D000045 ORTHO05D000611 8.0e-06 54.7 51 56.9


User provided reference genes

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