Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1890.9 956 100.0
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1851.3 954 97.7
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1768.4 958 93.7
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1762.7 954 92.1
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1760.3 956 91.9
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1759.6 956 91.8
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1758.0 956 92.1
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1753.8 951 91.9
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1752.6 954 91.7
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1752.6 954 91.7
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1750.7 956 91.8
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1749.9 956 91.5
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1744.6 958 91.2
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1731.8 957 90.7
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1728.8 942 91.4
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1679.8 956 88.2
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1649.8 871 94.5
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1639.0 857 95.8
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1605.1 973 83.4
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1546.9 962 81.0
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1535.0 965 80.0
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1532.7 971 79.9
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1530.0 961 80.0
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1528.1 956 81.0
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1526.5 892 84.4
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1525.4 954 81.3
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1525.4 977 79.3
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1525.4 970 79.1
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1525.0 972 79.5
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1523.8 900 83.8
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1523.1 890 84.9
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1522.7 964 80.4
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1520.4 906 83.2
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1519.2 966 79.7
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1518.8 891 84.3
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1515.7 925 81.8
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1514.6 891 84.2
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1513.8 890 84.3
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1513.8 890 84.6
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1512.3 963 80.4
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1511.1 890 84.4
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1510.0 897 83.6
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 962 78.9
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1499.6 896 82.6
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1499.6 902 82.9
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1499.2 955 78.3
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1498.4 944 80.3
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1497.6 964 78.0
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1496.9 993 76.1
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1496.1 952 80.0
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1495.3 896 82.3
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1494.9 916 81.8
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1494.6 908 81.7
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1494.6 960 77.8
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 957 78.4
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1491.9 895 82.5
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1491.5 968 77.3
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1491.5 968 77.3
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1490.7 890 82.8
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1489.9 957 78.3
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1489.6 940 79.8
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1487.6 870 83.9
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1486.9 941 79.7
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 892 82.7
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1486.1 965 77.4
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1484.5 902 82.0
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1482.6 953 78.2
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1481.5 890 82.2
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 875 83.9
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1476.1 895 81.6
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1475.3 871 83.4
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1474.5 893 82.1
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1469.9 903 80.6
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1469.1 970 75.9
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1466.8 893 80.6
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1466.4 889 81.7
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1465.7 872 83.0
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1461.8 878 81.8
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1460.7 897 81.6
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1460.7 947 76.9
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1460.3 874 82.0
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1459.9 874 82.5
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1458.7 913 79.2
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1456.0 872 82.2
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1452.6 874 82.0
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1445.6 914 79.2
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1445.6 886 80.0
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1443.3 874 81.5
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1442.9 842 84.6
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1441.4 858 82.2
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1441.0 943 75.9
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1441.0 844 84.2
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1440.6 905 79.2
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1440.2 858 83.3
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1438.7 930 78.4
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1437.9 855 82.7
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1436.4 899 78.4
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1435.2 874 80.8
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1427.2 870 80.8
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1421.4 907 77.9
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1421.0 855 82.1
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1418.7 878 81.0
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1415.2 921 77.6
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1412.9 851 81.8
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1410.6 844 81.5
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1409.8 891 78.6
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1399.4 902 77.4
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1390.9 918 75.2
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1384.0 862 79.1
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1376.3 888 78.2
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1374.8 1083 67.2
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1372.8 894 75.4
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1372.1 880 78.9
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1370.5 777 88.9
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1370.1 870 76.8
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1367.8 940 75.3
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1355.1 882 77.9
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1351.3 870 75.6
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1342.4 823 79.8
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1338.6 873 76.6
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1334.3 806 80.6
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1327.0 774 84.2
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1310.8 877 75.5
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1307.0 902 73.3
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1303.5 803 81.4
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1273.5 883 75.4
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1240.3 878 73.3
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1238.0 736 83.0
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1231.9 876 72.6
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1203.0 854 69.6
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1202.6 730 80.5
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1179.5 878 68.8
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1173.3 923 64.1
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 7.8e-311 1070.5 633 82.1
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.2e-303 1046.6 880 60.0
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 3.2e-285 985.3 581 82.8
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 4.5e-263 911.8 567 79.0
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 3.0e-259 899.0 913 54.2
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.6e-212 742.7 492 76.8
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.3e-209 734.2 445 82.5
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.4e-205 718.4 505 73.7
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 3.9e-190 669.5 417 80.8
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.7e-185 654.1 450 74.2
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 9.4e-184 648.3 743 49.0
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 7.7e-178 628.6 337 92.9
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 2.1e-159 567.4 466 63.9
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 4.3e-136 490.0 293 80.9
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 5.0e-129 466.5 390 62.1
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.5e-106 390.6 422 52.4
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 3.4e-101 374.0 318 63.5
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 1.4e-91 342.0 216 79.2
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 4.2e-83 313.9 258 63.2
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.8e-65 255.4 227 61.7
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 2.2e-60 238.4 216 58.3
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 4.4e-56 224.2 151 72.2
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.7e-44 185.7 119 73.1
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 2.2e-39 168.7 85 97.6
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 2.4e-38 165.2 267 39.7
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 8.5e-36 156.8 118 66.9
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 4.5e-29 134.4 81 79.0
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 3.8e-28 131.3 83 73.5
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.4e-25 122.9 91 63.7
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 5.7e-24 117.5 440 26.1
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 2.9e-23 115.2 130 53.1
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.0e-20 106.7 95 61.1
BcaC09g50249 Brassica carinata HOM05D003956 ORTHO05D004850 1.3e-20 106.3 81 63.0
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 1.9e-19 102.4 64 73.4
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 6.4e-15 87.4 60 65.0
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.1e-11 76.6 57 71.9
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-10 73.2 49 73.5
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 2.1e-10 72.4 46 76.1
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 1.1e-09 70.1 63 58.7
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 8.9e-09 67.0 43 69.8
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.2e-08 66.6 46 69.6
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 5.8e-08 64.3 43 67.4
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 3.2e-06 58.5 43 65.1


User provided reference genes

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