Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 2.2e-88 328.9 168 100.0
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 2.1e-78 295.8 168 89.3
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 2.7e-78 295.4 168 89.9
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 1.8e-77 292.7 168 88.7
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 2.4e-74 282.3 168 85.1
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 2.4e-74 282.3 168 85.1
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 2.4e-74 282.3 168 84.5
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 6.9e-74 280.8 168 83.9
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 1.0e-72 276.9 168 83.9
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 1.0e-72 276.9 168 83.9
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 1.0e-72 276.9 168 83.9
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 2.2e-72 275.8 168 86.9
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 1.9e-68 262.7 168 79.2
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 3.6e-54 215.3 168 68.5
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 4.4e-36 155.2 167 52.1
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 2.2e-35 152.9 159 52.8
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 2.8e-35 152.5 148 54.1
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 2.8e-35 152.5 157 50.3
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 3.7e-35 152.1 158 52.5
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 8.2e-35 151.0 152 55.9
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 3.1e-34 149.1 157 49.7
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 4.1e-34 148.7 159 49.7
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 5.3e-34 148.3 167 47.3
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 7.0e-34 147.9 161 51.6
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 7.0e-34 147.9 159 50.3
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 1.6e-33 146.7 162 51.2
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.0e-33 146.4 159 51.6
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.0e-33 146.4 159 51.6
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.0e-33 146.4 159 51.6
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 3.5e-33 145.6 157 52.2
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 4.5e-33 145.2 163 49.1
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 5.9e-33 144.8 162 47.5
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 1.0e-32 144.1 162 48.8
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 1.3e-32 143.7 151 49.7
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 1.3e-32 143.7 157 51.6
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 2.9e-32 142.5 161 50.3
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 2.9e-32 142.5 152 50.7
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 6.5e-32 141.4 151 51.7
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 1.9e-31 139.8 165 47.9
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 5.5e-31 138.3 149 49.7
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 7.2e-31 137.9 165 49.1
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 1.2e-30 137.1 149 49.7
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 1.6e-30 136.7 149 49.7
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 2.7e-30 136.0 149 48.3
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 2.7e-30 136.0 165 47.3
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 4.7e-30 135.2 165 46.7
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 6.1e-30 134.8 149 51.0
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 6.1e-30 134.8 157 49.0
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 6.1e-30 134.8 164 47.6
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 8.0e-30 134.4 159 48.4
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 1.4e-29 133.7 159 47.8
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 1.8e-29 133.3 159 48.4
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 1.8e-29 133.3 159 45.3
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 4.0e-29 132.1 156 47.4
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 4.0e-29 132.1 162 46.3
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 4.0e-29 132.1 159 46.5
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 4.0e-29 132.1 165 46.1
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 5.2e-29 131.7 159 49.1
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 5.2e-29 131.7 159 44.7
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 5.2e-29 131.7 159 46.5
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 6.8e-29 131.3 157 47.8
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 6.8e-29 131.3 157 46.5
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 1.2e-28 130.6 164 45.7
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 1.2e-28 130.6 155 49.0
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 1.2e-28 130.6 159 46.5
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 2.0e-28 129.8 149 47.0
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 3.4e-28 129.0 148 48.6
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 4.4e-28 128.6 152 46.1
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 5.7e-28 128.3 152 45.4
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 1.3e-27 127.1 152 44.7
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 1.3e-27 127.1 151 45.7
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.7e-27 126.7 152 46.1
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.2e-27 126.3 152 45.4
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 2.2e-27 126.3 152 47.4
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.8e-27 125.9 158 44.3
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 2.8e-27 125.9 156 44.9
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 3.7e-27 125.6 162 45.1
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 3.7e-27 125.6 162 45.1
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 3.7e-27 125.6 156 46.2
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 4.8e-27 125.2 152 43.4
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 1.1e-26 124.0 150 45.3
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 3.1e-26 122.5 156 44.9
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 9.1e-26 120.9 223 37.7
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 2.0e-25 119.8 164 43.9
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 4.5e-25 118.6 157 46.5
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 4.5e-25 118.6 133 47.4
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 4.5e-25 118.6 133 47.4
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 4.5e-25 118.6 133 47.4
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 6.5e-24 114.8 168 42.9
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 8.5e-24 114.4 163 43.6
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 7.2e-23 111.3 149 45.0
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 3.6e-22 109.0 148 43.2
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 8.0e-22 107.8 145 43.4
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 2.3e-21 106.3 154 40.9
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 4.0e-21 105.5 153 43.1
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.5e-20 103.6 153 43.1
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 3.4e-20 102.4 153 43.1
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 2.8e-19 99.4 148 44.6
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 4.9e-19 98.6 153 38.6
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 2.9e-16 89.4 151 35.8
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.9e-15 86.7 150 40.7
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 5.6e-15 85.1 157 35.7
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 1.6e-14 83.6 216 29.6
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 5.2e-13 78.6 138 34.1
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 8.9e-13 77.8 78 55.1
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 8.9e-13 77.8 87 49.4
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 8.9e-13 77.8 216 29.2
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 1.5e-12 77.0 143 39.9
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 2.0e-12 76.6 72 51.4
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 3.4e-12 75.9 111 45.0
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 3.4e-12 75.9 150 34.7
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 2.9e-11 72.8 83 48.2
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.4e-10 70.5 87 44.8
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 3.2e-10 69.3 71 49.3
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 4.6e-09 65.5 145 32.4
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.3e-08 63.2 80 45.0
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 6.6e-08 61.6 71 42.3
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.2e-06 57.4 65 47.7


User provided reference genes

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