Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 0.0e+00 1607.4 813 100.0
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 0.0e+00 1527.7 839 93.1
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 0.0e+00 1506.1 839 91.5
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 0.0e+00 1448.7 839 88.3
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 0.0e+00 1432.5 843 87.1
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 0.0e+00 1411.4 799 87.9
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 0.0e+00 1399.0 836 86.4
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 0.0e+00 1382.1 840 85.1
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 0.0e+00 1378.2 840 84.6
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 0.0e+00 1355.9 840 83.9
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 0.0e+00 1355.9 840 83.9
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 0.0e+00 1298.9 840 81.4
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 0.0e+00 1243.4 874 74.7
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 4.5e-296 1021.1 858 62.7
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 2.2e-295 1018.8 833 63.7
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 2.2e-295 1018.8 851 63.6
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 1.5e-294 1016.1 852 62.3
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 1.7e-290 1002.7 851 62.4
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 1.1e-289 1000.0 865 61.4
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 4.1e-289 998.0 865 62.1
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 7.0e-289 997.3 854 62.3
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 5.9e-288 994.2 865 61.3
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 1.3e-287 993.0 851 61.1
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 1.5e-286 989.6 855 60.9
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 2.5e-286 988.8 865 61.0
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 3.2e-286 988.4 849 61.0
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 3.2e-286 988.4 853 61.4
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 2.7e-285 985.3 894 59.4
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 4.7e-285 984.6 858 61.7
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 1.0e-284 983.4 860 61.4
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 3.0e-284 981.9 857 61.4
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 8.8e-284 980.3 849 61.0
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 8.8e-284 980.3 831 61.1
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.5e-283 979.5 857 61.0
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 2.0e-283 979.2 853 60.5
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 9.8e-283 976.9 857 61.0
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 3.7e-282 974.9 856 60.4
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 8.3e-282 973.8 831 60.8
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 4.1e-281 971.5 902 58.2
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.6e-280 969.5 828 62.3
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 3.5e-280 968.4 821 61.5
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.5e-280 968.4 897 58.3
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 4.5e-280 968.0 862 59.7
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 7.7e-280 967.2 865 59.7
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 7.7e-280 967.2 821 61.5
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 2.9e-279 965.3 821 61.6
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 1.2e-275 953.4 849 59.0
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 1.5e-275 953.0 788 64.1
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 2.2e-274 949.1 849 58.8
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 8.3e-274 947.2 846 59.1
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 2.4e-273 945.7 850 59.2
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 4.1e-273 944.9 881 57.7
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 4.1e-273 944.9 846 59.0
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 7.0e-273 944.1 844 60.5
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 2.7e-272 942.2 837 60.0
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 4.5e-272 941.4 790 62.9
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 1.3e-271 939.9 874 58.0
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 1.5e-270 936.4 806 61.0
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 4.3e-270 934.9 830 59.8
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 4.3e-270 934.9 844 58.2
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 7.3e-270 934.1 869 60.0
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 7.3e-270 934.1 861 58.5
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 1.6e-269 932.9 869 59.8
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 2.1e-269 932.6 831 59.7
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 8.0e-269 930.6 794 62.1
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 7.5e-267 924.1 853 58.9
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 6.4e-266 921.0 1006 51.9
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 1.1e-265 920.2 820 59.5
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 1.6e-264 916.4 881 57.7
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 7.8e-264 914.1 798 61.5
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 6.6e-263 911.0 861 58.2
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 7.3e-262 907.5 848 58.6
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 1.2e-261 906.7 853 58.9
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 6.2e-261 904.4 858 57.7
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 3.1e-260 902.1 862 57.2
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 5.2e-260 901.4 850 58.0
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 5.4e-257 891.3 855 57.5
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 1.9e-254 882.9 789 58.8
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 2.5e-254 882.5 869 55.1
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 4.3e-254 881.7 855 55.9
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 8.1e-253 877.5 920 53.9
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 8.9e-252 874.0 821 58.1
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 7.5e-251 870.9 926 53.5
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 3.2e-249 865.5 812 58.3
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 2.1e-245 852.8 864 55.7
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 2.1e-245 852.8 778 59.4
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 1.1e-241 840.5 790 57.3
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 3.9e-239 832.0 824 55.1
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 8.7e-239 830.9 849 53.7
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 4.3e-238 828.6 806 56.0
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 4.0e-236 822.0 836 55.6
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 4.9e-226 788.5 829 53.8
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 2.1e-221 773.1 753 57.0
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 8.2e-213 744.6 734 55.6
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 9.7e-198 694.5 721 54.5
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.5e-179 632.9 898 43.3
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.0e-178 631.3 905 44.0
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 2.1e-176 623.6 694 52.2
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.4e-164 583.6 495 61.8
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 4.1e-156 556.2 862 42.2
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.5e-153 547.0 819 42.9
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.7e-146 524.2 400 66.2
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 2.7e-139 500.4 398 63.6
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 8.9e-135 485.3 371 67.1
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 2.9e-133 480.3 599 47.7
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 4.8e-112 409.8 407 56.0
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 4.6e-107 393.3 448 49.8
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 8.7e-106 389.0 314 62.7
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 8.7e-98 362.5 441 49.9
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 4.1e-87 327.0 215 72.1
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 6.1e-83 313.2 787 32.0
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 8.2e-80 302.8 242 64.0
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 5.0e-77 293.5 175 77.1
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.7e-72 277.3 150 86.0
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 7.7e-70 269.6 544 36.9
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 7.7e-70 269.6 544 36.9
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 4.2e-68 263.8 369 44.4
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 6.1e-67 260.0 292 48.6
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 9.1e-63 246.1 137 83.2
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 5.5e-60 236.9 145 78.6
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.2e-57 229.2 268 51.9
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.7e-56 225.3 137 75.9
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.9e-54 216.9 429 31.2
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 3.7e-48 197.6 406 30.5
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 6.3e-48 196.8 117 74.4
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 3.6e-35 154.5 162 50.6
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 2.6e-33 148.3 129 59.7
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 6.6e-29 133.7 292 32.2
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 7.5e-25 120.2 175 48.0
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 6.0e-22 110.5 129 48.1
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 5.6e-20 104.0 62 75.8
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 7.3e-20 103.6 58 81.0
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 1.4e-18 99.4 145 43.4
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 1.1e-15 89.7 210 27.6
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 4.7e-11 74.3 64 56.2
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 2.4e-10 72.0 33 90.9
BraA04t17647Z Brassica rapa HOM05D005283 ORTHO05D006769 3.1e-10 71.6 55 65.5
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 1.2e-09 69.7 57 57.9
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.2e-07 61.6 58 58.6
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 4.2e-07 61.2 37 75.7
Cre13.g580450 Chlamydomonas reinhardtii HOM05D005283 ORTHO05D006769 1.6e-06 59.3 217 25.3
C05p44590 Brassica napus HOM05D005283 ORTHO05D021637 2.7e-06 58.5 37 73.0
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.5e-06 58.2 55 58.2
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.5e-06 58.2 55 58.2
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.5e-06 58.2 55 58.2
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.5e-06 58.2 55 58.2
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.5e-06 58.2 55 58.2
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.5e-06 58.2 55 58.2
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.5e-06 58.2 55 58.2
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.5e-06 58.2 55 58.2
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.5e-06 58.2 55 58.2
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.5e-06 58.2 55 58.2
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.6e-06 57.8 55 58.2


User provided reference genes

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