Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 5.7e-275 950.3 475 100.0
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.2e-267 926.0 475 96.6
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.1e-254 882.9 475 92.8
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 3.3e-254 881.3 476 92.0
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 1.7e-247 859.0 476 90.1
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.1e-244 849.7 476 88.7
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 3.1e-244 848.2 476 88.0
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 4.0e-244 847.8 476 88.9
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 6.8e-244 847.0 476 88.0
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.7e-242 842.4 476 87.6
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.7e-242 842.4 476 87.6
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 4.9e-242 840.9 475 87.8
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 5.4e-241 837.4 500 84.6
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.9e-210 735.3 479 74.5
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 4.6e-208 728.0 478 74.3
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.0e-207 726.9 480 73.5
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 1.9e-206 722.6 480 73.1
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 9.6e-206 720.3 479 73.1
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.3e-205 719.9 480 72.9
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 4.8e-205 718.0 479 72.9
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 4.0e-204 714.9 479 73.5
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 4.0e-204 714.9 479 72.4
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 9.0e-204 713.8 480 71.9
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.5e-203 713.0 480 72.7
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.5e-203 713.0 479 72.4
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.5e-203 713.0 479 72.4
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 5.8e-203 711.1 480 71.0
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 5.8e-203 711.1 479 72.2
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.3e-202 709.9 480 71.2
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 2.9e-202 708.8 482 71.2
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 1.1e-201 706.8 479 71.0
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.9e-201 706.1 475 72.0
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 4.2e-201 704.9 484 70.9
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.2e-200 703.4 506 68.6
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.6e-200 701.4 482 71.2
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 6.0e-200 701.0 482 71.4
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 1.3e-199 699.9 480 71.2
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 6.7e-199 697.6 479 72.0
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 8.7e-199 697.2 491 69.7
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 3.3e-198 695.3 482 71.0
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 9.6e-198 693.7 481 70.5
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 2.8e-197 692.2 479 71.2
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 8.2e-197 690.6 486 71.0
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.4e-196 689.9 484 70.2
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.8e-196 689.5 481 71.5
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 1.8e-196 689.5 480 70.0
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 2.4e-196 689.1 479 71.0
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 3.1e-196 688.7 480 70.6
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 1.2e-195 686.8 482 69.7
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.0e-195 686.0 479 70.4
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 5.9e-195 684.5 484 69.8
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 5.9e-195 684.5 480 70.0
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 1.7e-194 682.9 478 69.5
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.2e-194 682.6 484 69.4
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 2.2e-194 682.6 481 69.9
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 2.2e-194 682.6 481 68.4
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.9e-194 682.2 480 69.8
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.8e-194 681.8 481 69.6
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 5.0e-194 681.4 481 69.0
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 1.9e-193 679.5 496 68.1
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 1.9e-193 679.5 475 70.7
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 2.5e-193 679.1 476 70.6
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 2.5e-193 679.1 480 69.2
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.2e-192 676.8 476 68.9
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.2e-192 676.8 483 68.9
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.2e-192 676.8 480 68.8
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 2.1e-192 676.0 480 68.5
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 2.7e-192 675.6 481 68.6
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 4.6e-192 674.9 477 68.8
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 1.3e-191 673.3 475 68.6
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 8.7e-191 670.6 481 68.2
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 1.5e-190 669.8 478 68.2
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 7.4e-190 667.5 482 67.8
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 7.4e-190 667.5 481 68.0
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-189 666.8 516 65.5
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.3e-189 666.8 489 67.5
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.3e-189 666.8 475 69.3
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.3e-189 666.8 477 67.5
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 1.6e-189 666.4 477 67.7
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 2.2e-189 666.0 476 69.1
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 6.3e-189 664.5 428 75.0
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 6.3e-189 664.5 475 68.6
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.4e-188 663.3 508 64.8
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.4e-188 663.3 495 66.7
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 6.9e-188 661.0 476 68.7
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 9.1e-188 660.6 477 66.9
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 9.1e-188 660.6 475 68.4
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 5.9e-187 657.9 487 67.4
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.0e-186 657.1 476 68.3
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 5.0e-186 654.8 567 60.1
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.2e-184 650.2 477 69.2
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 7.9e-184 647.5 487 65.9
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 2.0e-182 642.9 494 64.4
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 3.3e-182 642.1 472 67.8
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 5.7e-182 641.3 481 64.7
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 5.7e-182 641.3 480 66.0
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 6.3e-181 637.9 477 65.2
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.8e-180 636.3 462 69.9
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 2.4e-180 636.0 491 66.2
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 9.1e-180 634.0 488 65.8
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 2.6e-179 632.5 416 71.4
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 5.9e-179 631.3 478 66.1
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 5.9e-179 631.3 479 64.9
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 3.8e-178 628.6 427 72.4
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 6.1e-176 621.3 512 63.9
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.0e-170 601.7 416 70.7
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 6.5e-170 601.3 428 68.0
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 2.7e-168 595.9 478 63.2
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.2e-165 586.3 489 60.3
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.6e-163 580.1 476 62.0
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 3.8e-162 575.5 482 61.8
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 9.4e-161 570.9 487 59.1
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.4e-156 557.0 475 57.1
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 7.0e-156 554.7 557 54.6
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 3.2e-153 545.8 412 67.0
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.8e-148 530.0 356 75.0
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 5.2e-143 511.9 414 62.8
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.9e-137 493.4 495 54.1
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 4.4e-134 482.3 479 52.8
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.6e-99 367.5 253 66.0
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 8.7e-98 361.7 597 38.7
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 2.1e-96 357.1 518 42.5
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 1.5e-89 334.3 249 65.5
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 2.1e-83 313.9 211 76.3
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.2e-78 298.1 541 37.2
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.2e-77 293.9 183 72.1
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.6e-75 286.6 222 61.7
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 7.7e-70 268.9 249 53.0
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.1e-68 265.0 286 55.2
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 8.2e-64 248.8 183 72.7
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 7.2e-60 235.7 176 63.1
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.3e-58 230.7 253 48.2
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 2.4e-55 220.7 486 34.0
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 7.7e-46 189.1 438 32.6
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 2.5e-44 184.1 172 54.7
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.3e-42 177.6 377 33.7
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.4e-39 168.3 449 28.3
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.5e-38 163.7 453 28.0
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.0e-34 150.6 212 43.4
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 9.5e-28 129.0 216 38.4
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.5e-20 105.1 182 39.6
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 5.8e-17 93.2 133 44.4
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.0e-14 83.2 65 66.2
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 1.0e-13 82.4 65 66.2
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.0e-13 82.4 65 66.2
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 2.3e-10 71.2 69 55.1
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.2e-09 68.9 83 50.6
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 2.0e-09 68.2 68 57.4
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 5.8e-09 66.6 64 51.6
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 3.2e-07 60.8 70 47.1
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 7.8e-06 56.2 60 45.0


User provided reference genes

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