Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 2.7e-92 342.0 179 100.0
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 6.2e-89 330.9 179 96.6
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 1.4e-88 329.7 179 96.6
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 2.4e-88 328.9 179 94.4
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 7.8e-84 313.9 179 90.5
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 3.0e-83 312.0 179 91.1
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 5.1e-83 311.2 179 90.5
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 2.6e-79 298.9 183 85.8
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 2.6e-79 298.9 183 85.8
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 4.4e-79 298.1 204 79.9
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 4.4e-79 298.1 181 85.1
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 2.2e-78 295.8 180 87.8
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 3.8e-78 295.0 182 85.2
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 4.9e-78 294.7 179 83.2
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 6.4e-78 294.3 179 88.3
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.8e-67 259.6 179 79.3
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.8e-64 249.6 180 72.8
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.5e-63 246.5 179 70.4
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 2.2e-54 216.1 172 66.3
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 2.2e-54 216.1 176 64.2
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 3.8e-54 215.3 176 64.2
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 1.9e-53 213.0 176 63.6
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 9.3e-53 210.7 173 64.2
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 1.6e-52 209.9 171 64.9
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.1e-52 209.5 170 63.5
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 2.7e-52 209.1 177 61.6
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 2.3e-51 206.1 175 64.0
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 3.0e-51 205.7 174 61.5
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.9e-51 205.3 176 61.9
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 8.7e-51 204.1 176 62.5
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.1e-50 203.8 170 63.5
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.3e-49 200.3 170 61.2
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.3e-49 200.3 170 61.2
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 3.7e-49 198.7 176 58.0
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 4.1e-48 195.3 177 58.8
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.2e-47 193.7 173 60.7
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 1.5e-47 193.4 174 60.9
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 5.9e-47 191.4 174 58.0
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 7.7e-47 191.0 172 58.7
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.7e-46 189.9 174 58.0
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 2.9e-46 189.1 173 59.0
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 3.8e-46 188.7 165 59.4
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.4e-45 186.8 154 64.3
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.9e-45 186.4 174 57.5
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 1.9e-45 186.4 174 57.5
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 3.2e-45 185.7 168 61.9
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 9.4e-45 184.1 162 60.5
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 1.6e-44 183.3 156 61.5
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 1.6e-44 183.3 156 61.5
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.6e-44 183.3 177 56.5
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 3.6e-44 182.2 162 60.5
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 4.6e-44 181.8 156 61.5
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 6.1e-44 181.4 162 59.9
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 6.1e-44 181.4 201 52.7
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 7.9e-44 181.0 174 56.9
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 1.0e-43 180.6 166 56.6
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.0e-43 180.6 171 55.0
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.4e-43 180.3 177 55.9
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.8e-43 179.9 162 58.6
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 2.3e-43 179.5 173 56.6
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 2.3e-43 179.5 161 57.1
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 3.0e-43 179.1 162 58.0
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 3.9e-43 178.7 172 55.8
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 8.8e-43 177.6 181 56.9
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.8e-43 177.6 162 60.5
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 1.5e-42 176.8 167 54.5
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 3.3e-42 175.6 156 59.6
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 3.3e-42 175.6 174 55.2
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 1.3e-41 173.7 170 54.1
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 6.3e-41 171.4 159 56.0
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 8.2e-41 171.0 156 59.0
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 3.1e-40 169.1 175 53.7
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 3.1e-40 169.1 164 54.3
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 5.3e-40 168.3 164 53.7
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.5e-39 166.8 173 54.9
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 2.0e-39 166.4 130 67.7
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 4.5e-39 165.2 175 53.1
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 1.0e-38 164.1 167 56.3
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.7e-38 163.3 166 51.8
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 2.2e-38 162.9 154 57.1
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 3.8e-38 162.2 134 64.2
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 3.2e-37 159.1 143 61.5
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 4.2e-37 158.7 162 53.1
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 5.5e-37 158.3 172 49.4
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 9.4e-37 157.5 168 53.0
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 9.4e-37 157.5 168 53.0
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 9.4e-37 157.5 153 55.6
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.6e-36 156.8 157 56.7
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 3.6e-36 155.6 172 49.4
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 3.6e-36 155.6 166 50.6
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 7.9e-36 154.5 172 48.8
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 1.0e-35 154.1 158 50.0
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 1.8e-35 153.3 162 51.9
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 1.8e-35 153.3 174 51.7
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.3e-35 152.9 146 57.5
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 5.1e-35 151.8 130 60.0
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 1.1e-34 150.6 175 50.9
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.1e-34 150.6 153 52.9
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 1.5e-34 150.2 164 51.2
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 2.6e-34 149.4 166 51.8
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 3.3e-34 149.1 162 51.9
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 4.4e-34 148.7 138 58.7
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 4.4e-34 148.7 175 51.4
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 1.3e-33 147.1 152 52.0
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 3.7e-33 145.6 164 48.2
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 4.8e-33 145.2 139 54.0
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 4.8e-33 145.2 176 46.6
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 6.3e-33 144.8 163 48.5
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 8.2e-33 144.4 133 57.1
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.1e-32 144.1 212 43.4
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.1e-32 142.1 154 51.9
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 7.0e-32 141.4 141 51.8
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.0e-30 137.5 207 43.0
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 2.2e-30 136.3 191 44.5
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 2.9e-30 136.0 169 45.0
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 3.8e-30 135.6 157 49.7
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 6.5e-30 134.8 150 49.3
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.1e-29 134.0 136 54.4
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.5e-29 132.9 215 41.4
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.2e-28 130.6 149 50.3
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 2.7e-28 129.4 162 45.1
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 6.1e-28 128.3 265 35.1
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.4e-27 127.1 152 47.4
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 2.3e-27 126.3 158 48.1
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 3.9e-27 125.6 90 64.4
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 9.1e-24 114.4 142 44.4
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 9.1e-24 114.4 112 57.1
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 1.2e-23 114.0 163 44.8
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 1.2e-23 114.0 134 47.8
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.0e-22 110.9 174 41.4
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 8.5e-22 107.8 113 54.0
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 1.2e-20 104.0 172 39.0
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 8.0e-20 101.3 86 64.0
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 5.2e-19 98.6 85 63.5
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 5.2e-19 98.6 172 37.8
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 8.8e-19 97.8 79 55.7
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 2.8e-17 92.8 100 49.0
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 3.7e-17 92.4 74 71.6
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.8e-16 90.1 84 61.9
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 1.8e-16 90.1 117 50.4
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.2e-15 87.4 81 58.0
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.0e-14 84.3 81 55.6
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.0e-14 84.3 87 56.3
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 1.3e-14 84.0 93 53.8
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 9.4e-13 77.8 154 38.3
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 1.2e-12 77.4 139 41.0
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.6e-12 77.0 169 35.5
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 3.4e-10 69.3 62 58.1
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 2.7e-07 59.7 82 46.3
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.5e-07 59.3 73 53.4
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 1.0e-06 57.8 111 39.6
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 6.6e-06 55.1 169 29.6


User provided reference genes

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