Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G38450 Arabidopsis lyrata HOM05D006632 ORTHO05D008224 8.0e-126 453.8 227 100.0
AT4G16510 Arabidopsis thaliana HOM05D006632 ORTHO05D008224 3.3e-119 431.8 227 94.7
Carub.0007s2499 Capsella rubella HOM05D006632 ORTHO05D008224 4.0e-117 424.9 227 93.0
CARHR222910 Cardamine hirsuta HOM05D006632 ORTHO05D008224 6.0e-113 411.0 227 90.7
Sp7g15070 Schrenkiella parvula HOM05D006632 ORTHO05D008224 1.4e-109 399.8 226 88.9
Thhalv10026162m.g Eutrema salsugineum HOM05D006632 ORTHO05D008224 8.9e-109 397.1 226 87.6
Aa31LG2G12620 Aethionema arabicum HOM05D006632 ORTHO05D008224 2.9e-107 392.1 227 85.9
A08p12540 Brassica napus HOM05D006632 ORTHO05D008224 1.9e-106 389.4 225 86.7
BraA08t33245Z Brassica rapa HOM05D006632 ORTHO05D008224 1.9e-106 389.4 225 86.7
BolC8t48376H Brassica oleracea HOM05D006632 ORTHO05D008224 1.6e-105 386.3 225 86.2
Gorai.008G238100 Gossypium raimondii HOM05D006632 ORTHO05D008224 1.9e-95 352.8 229 77.3
Thecc.03G254100 Theobroma cacao HOM05D006632 ORTHO05D008224 3.3e-95 352.1 224 77.7
Gohir.D12G222100 Gossypium hirsutum HOM05D006632 ORTHO05D008224 1.3e-94 350.1 230 77.0
Gohir.A12G219900 Gossypium hirsutum HOM05D006632 ORTHO05D008224 1.6e-94 349.7 230 77.0
THA.LOC104814709 Tarenaya hassleriana HOM05D006632 ORTHO05D008224 2.4e-93 345.9 227 78.0
Duzib205G0315 Durio zibethinus HOM05D006632 ORTHO05D008224 5.3e-93 344.7 230 74.8
CANSAT21G1011 Cannabis sativa HOM05D006632 ORTHO05D008224 3.4e-92 342.0 226 74.3
Solyc08g007410.4 Solanum lycopersicum HOM05D006632 ORTHO05D008224 7.6e-92 340.9 222 76.6
BcaC07g37993 Brassica carinata HOM05D006632 ORTHO05D008224 1.7e-91 339.7 198 85.9
Potri.003G111100 Populus trichocarpa HOM05D006632 ORTHO05D008224 1.7e-91 339.7 226 75.2
ClCG10G002780 Citrullus lanatus HOM05D006632 ORTHO05D008224 2.2e-91 339.3 226 73.9
Ciclev10022042m.g Citrus clementina HOM05D006632 ORTHO05D008224 2.2e-91 339.3 233 73.4
Cfa012746 Carpinus fangiana HOM05D006632 ORTHO05D008224 3.8e-91 338.6 227 74.4
MELO3C013948.2 Cucumis melo HOM05D006632 ORTHO05D008224 4.9e-91 338.2 226 74.3
Potri.008G135980 Populus trichocarpa HOM05D006632 ORTHO05D008224 4.9e-91 338.2 226 75.2
Prupe.5G072600 Prunus persica HOM05D006632 ORTHO05D008224 8.4e-91 337.4 230 74.3
Sopen08g003360 Solanum pennellii HOM05D006632 ORTHO05D008224 8.4e-91 337.4 222 75.2
TWI81G0482 Tripterygium wilfordii HOM05D006632 ORTHO05D008224 1.1e-90 337.0 235 72.3
Atru.chr9.1340 Acer truncatum HOM05D006632 ORTHO05D008224 5.4e-90 334.7 230 71.7
Hma1.2p1_0916F.1_g236520 Hydrangea macrophylla HOM05D006632 ORTHO05D008224 5.4e-90 334.7 230 73.5
Haze_07882 Corylus avellana HOM05D006632 ORTHO05D008224 3.5e-89 332.0 225 73.8
PGSC0003DMG400012506 Solanum tuberosum HOM05D006632 ORTHO05D008224 1.0e-88 330.5 221 73.8
CiPaw.11G152400 Carya illinoinensis HOM05D006632 ORTHO05D008224 3.0e-88 328.9 229 71.2
arahy.Tifrunner.gnm1.ann1.UQJ0AM Arachis hypogaea HOM05D006632 ORTHO05D008224 5.1e-88 328.2 223 72.6
arahy.Tifrunner.gnm1.ann1.E5X9TE Arachis hypogaea HOM05D006632 ORTHO05D008224 6.6e-88 327.8 223 72.6
Lalb_Chr05g0225741 Lupinus albus HOM05D006632 ORTHO05D008224 8.7e-88 327.4 226 70.8
Lsat_1_v5_gn_6_91561 Lactuca sativa HOM05D006632 ORTHO05D008224 1.1e-87 327.0 221 73.8
Glyma.05G058200 Glycine max HOM05D006632 ORTHO05D008224 1.9e-87 326.2 226 70.8
Sed0019633 Sechium edule HOM05D006632 ORTHO05D008224 2.5e-87 325.9 226 71.7
Oeu062975.1 Olea europaea HOM05D006632 ORTHO05D008224 3.3e-87 325.5 227 71.8
Psat4g070160 Pisum sativum HOM05D006632 ORTHO05D008224 4.3e-87 325.1 231 70.1
VMungo0251G2371 Vigna mungo HOM05D006632 ORTHO05D008224 5.6e-87 324.7 226 69.9
RcHm_v2.0_Chr7g0202881 Rosa chinensis HOM05D006632 ORTHO05D008224 9.6e-87 323.9 224 71.0
GSVIVG01001305001 Vitis vinifera HOM05D006632 ORTHO05D008224 2.1e-86 322.8 227 70.9
FAN18G2132 Fragaria x ananassa HOM05D006632 ORTHO05D008224 2.8e-86 322.4 228 71.9
CSS0044555 Camellia sinensis var. sinensis HOM05D006632 ORTHO05D008224 4.8e-86 321.6 230 70.4
Cc08_g12700 Coffea canephora HOM05D006632 ORTHO05D008224 8.1e-86 320.9 230 70.0
Manes.01G079200 Manihot esculenta HOM05D006632 ORTHO05D008224 1.1e-85 320.5 234 70.1
Phvul.003G219500 Phaseolus vulgaris HOM05D006632 ORTHO05D008224 1.1e-85 320.5 228 68.4
Rhsim07G0107100 Rhododendron simsii HOM05D006632 ORTHO05D008224 1.4e-85 320.1 230 71.3
Sabra03G0077000 Salix brachista HOM05D006632 ORTHO05D008224 1.4e-85 320.1 267 64.4
Nn6g34002 Nelumbo nucifera HOM05D006632 ORTHO05D008224 1.8e-85 319.7 227 70.9
PSO063G6697 Papaver somniferum HOM05D006632 ORTHO05D008224 1.8e-85 319.7 230 68.7
Nitab4.5_0000312g0210 Nicotiana tabacum HOM05D006632 ORTHO05D008224 2.4e-85 319.3 223 72.2
Nitab4.5_0001707g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 3.1e-85 318.9 238 67.2
PGR042G2887 Punica granatum HOM05D006632 ORTHO05D008224 3.1e-85 318.9 231 68.8
TPR.G37669 Trifolium pratense HOM05D006632 ORTHO05D008224 5.3e-85 318.2 228 68.9
Medtr4g101100 Medicago truncatula HOM05D006632 ORTHO05D008224 6.9e-85 317.8 237 67.9
Actinidia05199 Actinidia chinensis HOM05D006632 ORTHO05D008224 1.2e-84 317.0 230 69.1
Lj4g0001078 Lotus japonicus HOM05D006632 ORTHO05D008224 2.0e-84 316.2 225 68.9
HanXRQChr03g0088651 Helianthus annuus HOM05D006632 ORTHO05D008224 4.5e-84 315.1 217 71.9
PSO782G3692 Papaver somniferum HOM05D006632 ORTHO05D008224 5.8e-84 314.7 230 67.0
Lj2A215T22 Lonicera japonica HOM05D006632 ORTHO05D008224 7.6e-84 314.3 224 69.2
CsaV3_3G002820 Cucumis sativus L. HOM05D006632 ORTHO05D008224 2.2e-83 312.8 208 72.6
Nitab4.5_0004059g0060 Nicotiana tabacum HOM05D006632 ORTHO05D008224 2.9e-83 312.4 232 68.1
FAN04G0341 Fragaria x ananassa HOM05D006632 ORTHO05D008224 4.9e-83 311.6 236 68.2
FAN08G0873 Fragaria x ananassa HOM05D006632 ORTHO05D008224 1.1e-82 310.5 235 68.5
DCAR_027784 Daucus carota HOM05D006632 ORTHO05D008224 1.4e-82 310.1 235 68.1
FAN13G0450 Fragaria x ananassa HOM05D006632 ORTHO05D008224 1.2e-81 307.0 249 64.3
ECA240G2825 Erigeron canadensis HOM05D006632 ORTHO05D008224 1.6e-81 306.6 223 68.6
MD06G1061300 Malus domestica HOM05D006632 ORTHO05D008224 3.5e-81 305.4 230 65.2
Migut.A00961 Erythranthe guttata HOM05D006632 ORTHO05D008224 1.3e-80 303.5 236 66.5
vmacro14091 Vaccinium macrocarpon HOM05D006632 ORTHO05D008224 1.8e-80 303.1 273 60.1
Eucgr.E00435 Eucalyptus grandis HOM05D006632 ORTHO05D008224 3.0e-80 302.4 237 65.4
Aqoxy5G03914 Aquilegia oxysepala HOM05D006632 ORTHO05D008224 5.1e-80 301.6 224 67.9
EL10Ac5g13049 Beta vulgaris HOM05D006632 ORTHO05D008224 1.1e-79 300.4 220 68.2
HPP92_014478 Vanilla planifolia HOM05D006632 ORTHO05D008224 1.5e-79 300.1 226 66.4
CAN.G1227.10 Capsicum annuum HOM05D006632 ORTHO05D008224 2.5e-79 299.3 175 80.0
MSTRG.25531 Avicennia marina HOM05D006632 ORTHO05D008224 3.3e-79 298.9 226 66.4
Rhsim07G0106500 Rhododendron simsii HOM05D006632 ORTHO05D008224 4.3e-79 298.5 297 56.2
Ah.12g056690 Amaranthus hybridus HOM05D006632 ORTHO05D008224 5.6e-79 298.1 223 67.3
AUR62039953 Chenopodium quinoa HOM05D006632 ORTHO05D008224 3.7e-78 295.4 219 69.9
unitig_27.g25096 Utricularia gibba HOM05D006632 ORTHO05D008224 1.4e-77 293.5 187 73.8
AUR62007500 Chenopodium quinoa HOM05D006632 ORTHO05D008224 5.3e-77 291.6 220 68.6
CDE02G1947 Ceratophyllum demersum HOM05D006632 ORTHO05D008224 7.6e-76 287.7 182 74.2
Os02g0662200 Oryza sativa ssp. japonica HOM05D006632 ORTHO05D008224 1.7e-75 286.6 231 62.8
Zm00001eb249830 Zea mays HOM05D006632 ORTHO05D008224 4.6e-73 278.5 232 62.1
SEGI_31519 Sequoiadendron giganteum HOM05D006632 ORTHO05D008224 7.9e-73 277.7 221 62.4
SGA_v2.0_scaffold120G32870 Striga asiatica HOM05D006632 ORTHO05D008224 7.4e-71 271.2 285 53.0
Dinv21617 Davidia involucrata HOM05D006632 ORTHO05D008224 9.6e-71 270.8 223 65.0
SMO143G0241 Selaginella moellendorffii HOM05D006632 ORTHO05D008224 4.8e-70 268.5 194 63.9
Sc01g0008570 Simmondsia chinensis HOM05D006632 ORTHO05D008224 3.1e-69 265.8 160 77.5
Pp3c24_4050 Physcomitrium patens HOM05D006632 ORTHO05D008224 3.4e-68 262.3 247 56.7
Mapoly0121s0036 Marchantia polymorpha HOM05D006632 ORTHO05D008224 7.6e-68 261.2 184 66.8
Peaxi162Scf00102g01151 Petunia axillaris HOM05D006632 ORTHO05D008224 2.5e-66 256.1 230 59.6
Hund14588 Selenicereus undatus HOM05D006632 ORTHO05D008224 3.5e-65 252.3 379 41.2
QL12p012693 Quercus lobata HOM05D006632 ORTHO05D008224 1.8e-64 250.0 187 69.5
MD00G1115100 Malus domestica HOM05D006632 ORTHO05D008224 5.1e-64 248.4 243 55.6
Nitab4.5_0017825g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.8e-61 240.0 186 65.6
CBR_g26463 Chara braunii HOM05D006632 ORTHO05D008224 6.9e-61 238.0 185 60.0
DCAR_004945 Daucus carota HOM05D006632 ORTHO05D008224 5.7e-55 218.4 231 53.7
Cre07.g338250 Chlamydomonas reinhardtii HOM05D006632 ORTHO05D008224 3.3e-47 192.6 213 44.6
SalBow6G7145 Salvia bowleyana HOM05D006632 ORTHO05D008224 2.8e-46 189.5 152 67.8
Ca_21955_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 4.8e-46 188.7 152 65.8
Ca_22220_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 1.8e-45 186.8 163 63.2
C01p26240 Brassica napus HOM05D006632 ORTHO05D008224 3.5e-44 182.6 133 73.7
BolC1t02568H Brassica oleracea HOM05D006632 ORTHO05D008224 3.5e-44 182.6 133 73.7
ATR0564G418 Amborella trichopoda HOM05D006632 ORTHO05D008224 4.8e-38 162.2 161 54.7
BraA01t02010Z Brassica rapa HOM05D006632 ORTHO05D008224 2.6e-36 156.4 150 60.7
PRCOL_00001140 Prasinoderma coloniale HOM05D006632 ORTHO05D008224 3.5e-36 156.0 213 39.4
MCO15G182 Micromonas commoda HOM05D006632 ORTHO05D008224 5.9e-36 155.2 225 40.0
A01p20910 Brassica napus HOM05D006632 ORTHO05D008224 2.2e-35 153.3 150 60.0
Dinv39125 Davidia involucrata HOM05D006632 ORTHO05D008224 8.8e-32 141.4 136 58.8
AagrBONN_evm.TU.Sc2ySwM_117.1014 Anthoceros agrestis HOM05D006632 ORTHO05D008224 5.2e-24 115.5 139 47.5
Peaxi162Scf00002g00156 Petunia axillaris HOM05D006632 ORTHO05D008224 7.0e-21 105.1 78 66.7
Cpa.g.sc276.6 Carica papaya HOM05D006632 ORTHO05D008224 2.0e-20 103.6 108 57.4
Duzib068G0053 Durio zibethinus HOM05D006632 ORTHO05D008224 2.3e-19 100.1 54 81.5
FvH4_5g00080 Fragaria vesca HOM05D011292 ORTHO05D013599 2.3e-19 100.1 99 58.6
TAR636G0287 Trochodendron aralioides HOM05D006632 ORTHO05D008224 2.8e-17 93.2 98 56.1
DCAR_004944 Daucus carota HOM05D006632 ORTHO05D008224 1.2e-12 77.8 103 50.5
Potri.001G122501 Populus trichocarpa HOM05D006632 ORTHO05D008224 1.2e-09 67.8 53 58.5
Sabra01G0094400 Salix brachista HOM05D006632 ORTHO05D008224 2.1e-09 67.0 45 64.4


User provided reference genes

Program Settings