Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G38220 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 7.8e-86 320.9 217 100.0
AL7G38200 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 1.3e-35 154.1 80 98.8
AL7G38250 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 1.3e-35 154.1 80 98.8
AT4G16570 Arabidopsis thaliana HOM05D005079 ORTHO05D006362 1.2e-33 147.5 80 95.0
BraA01t02000Z Brassica rapa HOM05D005079 ORTHO05D006362 4.2e-31 139.0 91 82.4
BcaC09g50374 Brassica carinata HOM05D005079 ORTHO05D006362 5.5e-31 138.7 91 82.4
Carub.0007s2483 Capsella rubella HOM05D005079 ORTHO05D006362 7.1e-31 138.3 80 90.0
Sp7g15190 Schrenkiella parvula HOM05D005079 ORTHO05D006362 2.7e-30 136.3 83 90.4
A01p20660 Brassica napus HOM05D005079 ORTHO05D006362 6.0e-30 135.2 84 84.5
BcaNung00170 Brassica carinata HOM05D005079 ORTHO05D006362 1.0e-29 134.4 91 81.3
C01p26130 Brassica napus HOM05D005079 ORTHO05D006362 5.1e-29 132.1 91 79.1
BolC1t02557H Brassica oleracea HOM05D005079 ORTHO05D006362 5.1e-29 132.1 91 79.1
Thhalv10024535m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 1.9e-28 130.2 91 82.4
Aa31LG2G12700 Aethionema arabicum HOM05D005079 ORTHO05D006362 4.8e-27 125.6 91 78.0
CARHR223060 Cardamine hirsuta HOM05D005079 ORTHO05D006362 6.3e-27 125.2 103 67.0
BolC1t01100H Brassica oleracea HOM05D005079 ORTHO05D006362 1.2e-25 120.9 91 74.7
COL.COLO4_37183 Corchorus olitorius HOM05D005079 ORTHO05D006362 3.3e-20 102.8 69 75.4
Cpa.g.sc29.152 Carica papaya HOM05D005079 ORTHO05D006362 5.7e-20 102.1 71 71.8
THA.LOC104815493 Tarenaya hassleriana HOM05D005079 ORTHO05D006362 7.4e-20 101.7 70 75.7
TWI81G0601 Tripterygium wilfordii HOM05D005079 ORTHO05D006362 7.4e-20 101.7 94 60.6
Cc08_g12490 Coffea canephora HOM05D005079 ORTHO05D006362 2.8e-19 99.8 75 69.3
Duzib205G0133 Durio zibethinus HOM05D005079 ORTHO05D006362 3.7e-19 99.4 71 70.4
GSVIVG01001320001 Vitis vinifera HOM05D005079 ORTHO05D006362 1.1e-18 97.8 89 61.8
Lj8C262G4 Lonicera japonica HOM05D005079 ORTHO05D006362 1.4e-18 97.4 80 62.5
Eucgr.D02075 Eucalyptus grandis HOM05D005079 ORTHO05D006362 1.8e-18 97.1 87 63.2
Thecc.03G252100 Theobroma cacao HOM05D005079 ORTHO05D006362 2.4e-18 96.7 71 67.6
Atru.chr9.1320 Acer truncatum HOM05D005079 ORTHO05D006362 3.1e-18 96.3 75 68.0
Gohir.A03G008400 Gossypium hirsutum HOM05D005079 ORTHO05D006362 3.1e-18 96.3 71 69.0
Hma1.2p1_1786F.1_g302370 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 3.1e-18 96.3 66 72.7
Gohir.D03G162500 Gossypium hirsutum HOM05D005079 ORTHO05D006362 4.1e-18 95.9 71 69.0
Gorai.003G171100 Gossypium raimondii HOM05D005079 ORTHO05D006362 4.1e-18 95.9 71 69.0
CsaV3_5G004210 Cucumis sativus L. HOM05D005079 ORTHO05D006362 6.9e-18 95.1 74 68.9
MD04G1063800 Malus domestica HOM05D005079 ORTHO05D006362 6.9e-18 95.1 75 70.7
QL12p012230 Quercus lobata HOM05D005079 ORTHO05D006362 6.9e-18 95.1 76 65.8
TPR.G37701 Trifolium pratense HOM05D005079 ORTHO05D006362 6.9e-18 95.1 77 63.6
Manes.01G080200 Manihot esculenta HOM05D005079 ORTHO05D006362 9.1e-18 94.7 72 68.1
Ciclev10023597m.g Citrus clementina HOM05D005079 ORTHO05D006362 1.2e-17 94.4 66 71.2
Dinv39142 Davidia involucrata HOM05D005079 ORTHO05D006362 1.5e-17 94.0 68 67.6
Lj4g0012374 Lotus japonicus HOM05D005079 ORTHO05D006362 1.5e-17 94.0 73 68.5
Prupe.5G069000 Prunus persica HOM05D005079 ORTHO05D006362 1.5e-17 94.0 76 67.1
MELO3C005534.2 Cucumis melo HOM05D005079 ORTHO05D006362 2.0e-17 93.6 74 67.6
Migut.A00986 Erythranthe guttata HOM05D005079 ORTHO05D006362 2.0e-17 93.6 77 59.7
SalBow6G6450 Salvia bowleyana HOM05D005079 ORTHO05D006362 2.0e-17 93.6 83 61.4
Hma1.2p1_1172F.1_g263540 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 2.6e-17 93.2 66 71.2
Psat4g071960 Pisum sativum HOM05D005079 ORTHO05D006362 2.6e-17 93.2 93 55.9
Potri.003G076500 Populus trichocarpa HOM05D005079 ORTHO05D006362 2.6e-17 93.2 88 59.1
Solyc06g060670.4 Solanum lycopersicum HOM05D005079 ORTHO05D006362 5.9e-17 92.0 74 62.2
MSTRG.25528 Avicennia marina HOM05D005079 ORTHO05D006362 1.0e-16 91.3 85 58.8
Glyma.05G059000 Glycine max HOM05D005079 ORTHO05D006362 1.0e-16 91.3 91 59.3
CiPaw.11G153800 Carya illinoinensis HOM05D005079 ORTHO05D006362 1.3e-16 90.9 85 60.0
Haze_07920 Corylus avellana HOM05D005079 ORTHO05D006362 1.3e-16 90.9 75 62.7
Nitab4.5_0008754g0010 Nicotiana tabacum HOM05D005079 ORTHO05D006362 1.3e-16 90.9 94 54.3
Cfa012713 Carpinus fangiana HOM05D005079 ORTHO05D006362 1.7e-16 90.5 75 64.0
Sopen06g020790 Solanum pennellii HOM05D005079 ORTHO05D006362 1.7e-16 90.5 64 67.2
TAR629G2205 Trochodendron aralioides HOM05D005079 ORTHO05D006362 1.7e-16 90.5 94 51.1
ClCG01G004030 Citrullus lanatus HOM05D005079 ORTHO05D006362 2.2e-16 90.1 75 65.3
CAN.G1037.9 Capsicum annuum HOM05D005079 ORTHO05D006362 2.9e-16 89.7 68 66.2
Medtr4g100980 Medicago truncatula HOM05D005079 ORTHO05D006362 3.8e-16 89.4 71 67.6
Nitab4.5_0000618g0020 Nicotiana tabacum HOM05D005079 ORTHO05D006362 3.8e-16 89.4 83 60.2
Ca_21961_v3 Cicer arietinum L. HOM05D005079 ORTHO05D006362 5.0e-16 89.0 68 66.2
RcHm_v2.0_Chr7g0203171 Rosa chinensis HOM05D005079 ORTHO05D006362 8.5e-16 88.2 74 66.2
Nn1g01009 Nelumbo nucifera HOM05D005079 ORTHO05D006362 1.1e-15 87.8 86 57.0
CANSAT21G1873 Cannabis sativa HOM05D005079 ORTHO05D006362 1.4e-15 87.4 83 61.4
Sabra03G0047100 Salix brachista HOM05D005079 ORTHO05D006362 2.5e-15 86.7 74 62.2
Ah.12g056870 Amaranthus hybridus HOM05D005079 ORTHO05D006362 3.2e-15 86.3 88 55.7
CSS0023122 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 4.2e-15 85.9 88 52.3
Hund11595 Selenicereus undatus HOM05D005079 ORTHO05D006362 4.2e-15 85.9 84 56.0
CSS0009127 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 9.4e-15 84.7 88 52.3
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 1.2e-14 84.3 82 61.0
FAN08G1452 Fragaria x ananassa HOM05D005079 ORTHO05D006362 1.2e-14 84.3 99 52.5
Sc01g0008470 Simmondsia chinensis HOM05D005079 ORTHO05D006362 1.6e-14 84.0 68 61.8
FvH4_5g18820 Fragaria vesca HOM05D005079 ORTHO05D006362 2.1e-14 83.6 74 62.2
FAN18G1282 Fragaria x ananassa HOM05D005079 ORTHO05D006362 2.1e-14 83.6 74 62.2
Lsat_1_v5_gn_5_188000 Lactuca sativa HOM05D005079 ORTHO05D006362 2.1e-14 83.6 84 56.0
Actinidia14431 Actinidia chinensis HOM05D005079 ORTHO05D006362 2.7e-14 83.2 66 65.2
AUR62007514 Chenopodium quinoa HOM05D005079 ORTHO05D006362 2.7e-14 83.2 67 67.2
AUR62042789 Chenopodium quinoa HOM05D005079 ORTHO05D006362 3.6e-14 82.8 68 63.2
FAN04G2358 Fragaria x ananassa HOM05D005079 ORTHO05D006362 3.6e-14 82.8 74 63.5
HanXRQChr17g0549661 Helianthus annuus HOM05D005079 ORTHO05D006362 3.6e-14 82.8 70 61.4
Lalb_Chr16g0386651 Lupinus albus HOM05D005079 ORTHO05D006362 3.6e-14 82.8 74 66.2
MBI04_g09493_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 3.6e-14 82.8 83 55.4
CDE04G0837 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 4.6e-14 82.4 87 55.2
CDE04G3241 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 6.1e-14 82.0 87 55.2
PGR031G3122 Punica granatum HOM05D005079 ORTHO05D006362 6.1e-14 82.0 76 59.2
Rhsim02G0165500 Rhododendron simsii HOM05D005079 ORTHO05D006362 6.1e-14 82.0 62 64.5
VMungo0540G1603 Vigna mungo HOM05D005079 ORTHO05D006362 7.9e-14 81.6 66 65.2
AUR62044148 Chenopodium quinoa HOM05D005079 ORTHO05D006362 1.0e-13 81.3 68 61.8
vmacro00317 Vaccinium macrocarpon HOM05D005079 ORTHO05D006362 1.4e-13 80.9 79 57.0
Sed0023601 Sechium edule HOM05D005079 ORTHO05D006362 3.9e-13 79.3 71 59.2
EL10Ac5g13073 Beta vulgaris HOM05D005079 ORTHO05D006362 5.1e-13 79.0 68 60.3
Phvul.006G006200 Phaseolus vulgaris HOM05D005079 ORTHO05D006362 5.1e-13 79.0 66 62.1
Oeu020426.1 Olea europaea HOM05D005079 ORTHO05D006362 6.7e-13 78.6 70 57.1
HPP92_008920 Vanilla planifolia HOM05D005079 ORTHO05D006362 6.7e-13 78.6 74 59.5
PSO017G3550 Papaver somniferum HOM05D005079 ORTHO05D006362 1.5e-12 77.4 80 52.5
Zm00001eb379320 Zea mays HOM05D005079 ORTHO05D006362 2.0e-12 77.0 92 48.9
SGA_v2.0_scaffold120G32882 Striga asiatica HOM05D005079 ORTHO05D006362 2.6e-12 76.6 65 60.0
ATR0317G049 Amborella trichopoda HOM05D005079 ORTHO05D006362 5.7e-12 75.5 62 59.7
Aqoxy7G00758 Aquilegia oxysepala HOM05D005079 ORTHO05D006362 9.7e-12 74.7 72 56.9
SHI11315 Sapria himalayana HOM05D005079 ORTHO05D006362 1.3e-11 74.3 80 51.2
Os06g0105500 Oryza sativa ssp. japonica HOM05D005079 ORTHO05D006362 2.2e-11 73.6 79 51.9
unitig_744.g24463 Utricularia gibba HOM05D005079 ORTHO05D006362 2.4e-10 70.1 81 46.9
HPP92_028200 Vanilla planifolia HOM05D005079 ORTHO05D006362 3.1e-10 69.7 73 56.2
ECA232G1687 Erigeron canadensis HOM05D005079 ORTHO05D006362 2.2e-08 63.5 58 55.2
Thhalv10000400m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 1.9e-07 60.5 37 83.8
Cre02.g141626 Chlamydomonas reinhardtii HOM05D005079 ORTHO05D006362 6.1e-06 55.5 61 45.9


User provided reference genes

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