Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G38040 Arabidopsis lyrata HOM05D007712 ORTHO05D009755 5.0e-24 113.6 58 100.0
AT4G16695 Arabidopsis thaliana HOM05D007712 ORTHO05D009755 1.1e-23 112.5 58 98.3
CARHR223220 Cardamine hirsuta HOM05D007712 ORTHO05D009755 1.1e-23 112.5 58 98.3
Sp7g15330 Schrenkiella parvula HOM05D007712 ORTHO05D009755 1.2e-22 109.0 56 100.0
Gohir.D12G218700 Gossypium hirsutum HOM05D007712 ORTHO05D009755 1.0e-21 105.9 58 93.1
Gorai.008G234300 Gossypium raimondii HOM05D007712 ORTHO05D009755 1.0e-21 105.9 58 93.1
Carub.0007s2470 Capsella rubella HOM05D007712 ORTHO05D009755 8.9e-21 102.8 52 98.1
MD06G1056600 Malus domestica HOM05D007712 ORTHO05D009755 1.5e-20 102.1 58 87.9
Prupe.5G067000 Prunus persica HOM05D007712 ORTHO05D009755 2.0e-20 101.7 58 87.9
Thecc.03G249200 Theobroma cacao HOM05D007712 ORTHO05D009755 2.6e-20 101.3 58 86.2
RcHm_v2.0_Chr7g0203631 Rosa chinensis HOM05D007712 ORTHO05D009755 3.4e-20 100.9 58 84.5
CSS0007152 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 4.4e-20 100.5 58 86.2
BcaNung00160 Brassica carinata HOM05D007712 ORTHO05D009755 7.5e-20 99.8 52 96.2
MD04G1062500 Malus domestica HOM05D007712 ORTHO05D009755 7.5e-20 99.8 58 86.2
Psat4g072600 Pisum sativum HOM05D007712 ORTHO05D009755 9.8e-20 99.4 58 87.9
Medtr4g100770 Medicago truncatula HOM05D007712 ORTHO05D009755 1.3e-19 99.0 58 86.2
Aa31LG2G12880 Aethionema arabicum HOM05D007712 ORTHO05D009755 1.7e-19 98.6 52 94.2
C01p25890 Brassica napus HOM05D007712 ORTHO05D009755 2.9e-19 97.8 52 92.3
Nn6g33914 Nelumbo nucifera HOM05D007712 ORTHO05D009755 6.4e-19 96.7 58 81.0
CiPaw.11G080700 Carya illinoinensis HOM05D007712 ORTHO05D009755 8.3e-19 96.3 58 82.8
Gohir.A12G216100 Gossypium hirsutum HOM05D007712 ORTHO05D009755 8.3e-19 96.3 52 92.3
TWI60G0592 Tripterygium wilfordii HOM05D007712 ORTHO05D009755 8.3e-19 96.3 58 84.5
COL.COLO4_37150 Corchorus olitorius HOM05D007712 ORTHO05D009755 1.9e-18 95.1 52 86.5
Duzib205G0100 Durio zibethinus HOM05D007712 ORTHO05D009755 2.4e-18 94.7 52 88.5
Cpa.g.sc29.177 Carica papaya HOM05D007712 ORTHO05D009755 7.0e-18 93.2 52 90.4
Haze_07896 Corylus avellana HOM05D007712 ORTHO05D009755 7.0e-18 93.2 52 88.5
Lj4g0003995 Lotus japonicus HOM05D007712 ORTHO05D009755 7.0e-18 93.2 55 87.3
Manes.02G041000 Manihot esculenta HOM05D007712 ORTHO05D009755 7.0e-18 93.2 54 81.5
CSS0012443 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 9.2e-18 92.8 52 86.5
Duzib268G1849 Durio zibethinus HOM05D007712 ORTHO05D009755 9.2e-18 92.8 58 77.6
A01p20590 Brassica napus HOM05D007712 ORTHO05D009755 2.0e-17 91.7 50 90.0
BraA01t01987Z Brassica rapa HOM05D007712 ORTHO05D009755 2.0e-17 91.7 50 90.0
Glyma.05G061200 Glycine max HOM05D007712 ORTHO05D009755 2.0e-17 91.7 52 86.5
Glyma.17G143000 Glycine max HOM05D007712 ORTHO05D009755 2.0e-17 91.7 52 86.5
Ca_21974_v3 Cicer arietinum L. HOM05D007712 ORTHO05D009755 3.5e-17 90.9 52 86.5
Duzib068G1393 Durio zibethinus HOM05D007712 ORTHO05D009755 6.0e-17 90.1 52 84.6
Lsat_1_v5_gn_6_18000 Lactuca sativa HOM05D007712 ORTHO05D009755 6.0e-17 90.1 59 78.0
THA.LOC104815500 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 6.0e-17 90.1 52 86.5
BcaC06g33508 Brassica carinata HOM05D007712 ORTHO05D009755 7.8e-17 89.7 52 90.4
C07p48200 Brassica napus HOM05D007712 ORTHO05D009755 7.8e-17 89.7 52 90.4
CiPaw.12G051200 Carya illinoinensis HOM05D007712 ORTHO05D009755 1.0e-16 89.4 59 79.7
Nn1g00955 Nelumbo nucifera HOM05D007712 ORTHO05D009755 1.0e-16 89.4 54 79.6
PSO063G7306 Papaver somniferum HOM05D007712 ORTHO05D009755 1.0e-16 89.4 58 74.1
DCAR_006839 Daucus carota HOM05D007712 ORTHO05D009755 1.3e-16 89.0 52 82.7
Phvul.003G221800 Phaseolus vulgaris HOM05D007712 ORTHO05D009755 1.3e-16 89.0 52 84.6
VMungo0251G2826 Vigna mungo HOM05D007712 ORTHO05D009755 1.3e-16 89.0 53 83.0
Hma1.2p1_0316F.1_g122970 Hydrangea macrophylla HOM05D007712 ORTHO05D009755 1.7e-16 88.6 52 86.5
Migut.A01117 Erythranthe guttata HOM05D007712 ORTHO05D009755 2.3e-16 88.2 61 77.0
ClCG01G004140 Citrullus lanatus HOM05D007712 ORTHO05D009755 3.0e-16 87.8 53 79.2
Manes.01G082000 Manihot esculenta HOM05D007712 ORTHO05D009755 3.9e-16 87.4 52 78.8
Solyc08g078480.3 Solanum lycopersicum HOM05D007712 ORTHO05D009755 3.9e-16 87.4 54 83.3
PGSC0003DMG402004821 Solanum tuberosum HOM05D007712 ORTHO05D009755 5.0e-16 87.0 54 81.5
Potri.003G078100 Populus trichocarpa HOM05D007712 ORTHO05D009755 6.6e-16 86.7 52 84.6
HanXRQChr16g0510951 Helianthus annuus HOM05D007712 ORTHO05D009755 8.6e-16 86.3 60 71.7
BolC1t02534H Brassica oleracea HOM05D007712 ORTHO05D009755 1.1e-15 85.9 46 91.3
Ciclev10023737m.g Citrus clementina HOM05D007712 ORTHO05D009755 1.5e-15 85.5 50 80.0
TAR629G1768 Trochodendron aralioides HOM05D007712 ORTHO05D009755 1.5e-15 85.5 57 75.4
BolC7t45343H Brassica oleracea HOM05D007712 ORTHO05D009755 1.9e-15 85.1 50 90.0
DCAR_008500 Daucus carota HOM05D007712 ORTHO05D009755 2.5e-15 84.7 52 75.0
EL10Ac5g12378 Beta vulgaris HOM05D007712 ORTHO05D009755 3.3e-15 84.3 52 82.7
Potri.001G156500 Populus trichocarpa HOM05D007712 ORTHO05D009755 5.6e-15 83.6 53 79.2
Eucgr.E00411 Eucalyptus grandis HOM05D007712 ORTHO05D009755 7.3e-15 83.2 64 71.9
Lalb_Chr16g0386781 Lupinus albus HOM05D007712 ORTHO05D009755 7.3e-15 83.2 58 79.3
PGR031G2779 Punica granatum HOM05D007712 ORTHO05D009755 7.3e-15 83.2 52 75.0
Nitab4.5_0002289g0090 Nicotiana tabacum HOM05D007712 ORTHO05D009755 9.5e-15 82.8 50 80.0
PSO782G1928 Papaver somniferum HOM05D007712 ORTHO05D009755 9.5e-15 82.8 52 75.0
CANSAT21G0844 Cannabis sativa HOM05D007712 ORTHO05D009755 1.2e-14 82.4 47 85.1
MELO3C005524.2 Cucumis melo HOM05D007712 ORTHO05D009755 1.6e-14 82.0 53 79.2
Sed0021045 Sechium edule HOM05D007712 ORTHO05D009755 2.1e-14 81.6 53 81.1
ATR0317G046 Amborella trichopoda HOM05D007712 ORTHO05D009755 1.4e-13 79.0 52 69.2
Nitab4.5_0001381g0130 Nicotiana tabacum HOM05D007712 ORTHO05D009755 1.4e-13 79.0 48 81.2
BraA08t33255Z Brassica rapa HOM05D007712 ORTHO05D009755 1.8e-13 78.6 45 88.9
Lalb_Chr05g0221211 Lupinus albus HOM05D007712 ORTHO05D009755 2.3e-13 78.2 58 72.4
HanXRQChr11g0345641 Helianthus annuus HOM05D007712 ORTHO05D009755 5.2e-13 77.0 47 76.6
HanXRQChr13g0400821 Helianthus annuus HOM05D007712 ORTHO05D009755 8.9e-13 76.3 47 76.6
Pp3c5_22940 Physcomitrium patens HOM05D007712 ORTHO05D009755 1.2e-12 75.9 55 65.5
vmacro00192 Vaccinium macrocarpon HOM05D007712 ORTHO05D009755 2.0e-12 75.1 54 70.4
CAN.G1178.28 Capsicum annuum HOM05D007712 ORTHO05D009755 4.4e-12 73.9 47 76.6
Mapoly0033s0142 Marchantia polymorpha HOM05D007712 ORTHO05D009755 9.8e-12 72.8 52 65.4
THA.LOC104815513 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 2.9e-11 71.2 38 94.7
HPP92_021033 Vanilla planifolia HOM05D007712 ORTHO05D009755 3.7e-11 70.9 50 70.0
HPP92_027434 Vanilla planifolia HOM05D007712 ORTHO05D009755 3.7e-11 70.9 50 70.0
unitig_744.g24472 Utricularia gibba HOM05D007712 ORTHO05D009755 4.9e-11 70.5 47 72.3
SHI02516 Sapria himalayana HOM05D007712 ORTHO05D009755 1.1e-10 69.3 46 78.3
A03p50120 Brassica napus HOM05D007712 ORTHO05D009755 7.1e-10 66.6 35 91.4
CBR_g755 Chara braunii HOM05D007712 ORTHO05D009755 2.1e-09 65.1 49 63.3
FAN08G0196 Fragaria x ananassa HOM05D007712 ORTHO05D009755 8.6e-08 59.7 31 93.5
FAN04G1285 Fragaria x ananassa HOM05D007712 ORTHO05D009755 3.3e-07 57.8 31 90.3
Os03g0102000 Oryza sativa ssp. japonica HOM05D007712 ORTHO05D009755 3.6e-06 54.3 57 52.6


User provided reference genes

Program Settings