Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 3.3e-232 808.1 440 100.0
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 1.3e-188 663.3 441 84.6
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 9.7e-144 514.2 469 63.3
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 1.2e-141 507.3 470 63.0
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 4.5e-141 505.4 487 62.2
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 3.3e-136 489.2 455 65.1
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 4.6e-101 372.5 479 54.5
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 9.5e-99 364.8 473 53.5
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 4.4e-96 355.9 474 53.0
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 7.5e-96 355.1 487 53.0
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 1.4e-94 350.9 465 49.9
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 4.6e-93 345.9 486 50.6
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 1.2e-82 311.2 490 44.1
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 1.1e-54 218.4 213 61.0
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 9.7e-27 125.6 490 30.6
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 1.8e-25 121.3 490 30.6
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 3.8e-23 113.6 477 28.9
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 5.0e-23 113.2 457 30.0
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 5.0e-23 113.2 436 29.6
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 3.2e-22 110.5 478 29.1
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 5.5e-22 109.8 489 27.6
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 7.2e-22 109.4 476 27.7
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 1.6e-21 108.2 498 26.7
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 2.7e-21 107.5 479 27.3
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 6.1e-21 106.3 486 28.2
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 8.8e-20 102.4 477 27.0
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 8.8e-20 102.4 520 28.1
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 1.5e-19 101.7 334 29.9
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 5.7e-19 99.8 455 27.5
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 1.7e-18 98.2 473 28.5
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 4.8e-18 96.7 469 26.7
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 3.1e-17 94.0 498 26.7
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 4.1e-17 93.6 428 28.3
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 5.3e-17 93.2 465 26.9
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 2.0e-16 91.3 318 28.3
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 2.0e-16 91.3 468 26.5
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 5.9e-16 89.7 457 27.4
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 5.9e-16 89.7 466 25.5
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 1.0e-15 89.0 353 28.6
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 1.7e-15 88.2 479 26.7
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 2.2e-15 87.8 466 26.0
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.9e-15 87.4 538 25.7
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 2.9e-15 87.4 322 31.1
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 3.8e-15 87.0 435 25.3
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 5.0e-15 86.7 456 25.7
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 8.5e-15 85.9 309 28.2
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 1.1e-14 85.5 507 25.6
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 1.5e-14 85.1 355 25.1
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 1.5e-14 85.1 347 28.2
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 1.5e-14 85.1 486 26.3
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 1.9e-14 84.7 465 27.7
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 2.5e-14 84.3 508 24.2
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 3.2e-14 84.0 464 24.4
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 4.2e-14 83.6 444 27.3
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 5.5e-14 83.2 478 24.1
AL6G36200 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 9.4e-14 82.4 61 72.1
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 1.6e-13 81.6 468 26.1
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 2.7e-13 80.9 502 24.3
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 3.6e-13 80.5 308 29.5
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 4.7e-13 80.1 473 29.0
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 1.0e-12 79.0 468 25.9
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 1.4e-12 78.6 463 24.0
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 1.4e-12 78.6 454 24.9
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 1.8e-12 78.2 307 28.3
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 6.8e-12 76.3 493 24.3
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 6.8e-12 76.3 457 25.2
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 6.8e-12 76.3 426 23.9
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 8.8e-12 75.9 500 24.0
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 2.0e-11 74.7 342 24.9
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 2.0e-11 74.7 455 25.5
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 2.0e-11 74.7 472 25.0
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 4.4e-11 73.6 442 26.7
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 9.8e-11 72.4 321 27.4
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 9.8e-11 72.4 333 24.6
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 2.2e-10 71.2 437 25.6
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 2.8e-10 70.9 210 30.5
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 2.8e-10 70.9 466 25.1
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 3.7e-10 70.5 480 26.7
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 4.8e-10 70.1 466 26.6
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 4.8e-10 70.1 437 26.3
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 6.3e-10 69.7 475 23.2
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 1.4e-09 68.6 223 29.1
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 2.4e-09 67.8 111 36.0
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 5.4e-09 66.6 450 23.6
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 5.4e-09 66.6 450 23.6
AL3G44940 Arabidopsis lyrata HOM05D037762 ORTHO05D014024 7.0e-09 66.2 117 35.9
AL6G38430 Arabidopsis lyrata HOM05D037762 ORTHO05D014024 7.0e-09 66.2 117 35.9
AL8G18000 Arabidopsis lyrata HOM05D037762 ORTHO05D014024 7.0e-09 66.2 117 35.9
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 1.6e-08 65.1 446 22.4
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 5.9e-08 63.2 364 25.0
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 1.0e-07 62.4 486 24.3
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 2.9e-07 60.8 315 26.0
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 1.5e-06 58.5 439 23.7
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 2.5e-06 57.8 328 25.6
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 5.5e-06 56.6 55 50.9
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 9.4e-06 55.8 449 23.2


User provided reference genes

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