Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 8.4e-79 297.0 151 100.0
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.1e-73 278.5 151 94.0
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.1e-65 251.9 152 86.2
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 5.3e-65 251.1 146 85.6
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 4.8e-58 228.0 150 78.7
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 5.3e-57 224.6 151 76.2
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 9.0e-57 223.8 150 76.7
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 1.7e-55 219.5 149 78.5
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 2.9e-55 218.8 147 76.9
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 2.9e-55 218.8 149 78.5
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 2.9e-55 218.8 149 78.5
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 2.9e-55 218.8 147 76.9
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 2.9e-55 218.8 147 76.9
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 3.8e-55 218.4 147 76.9
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 8.4e-55 217.2 147 76.2
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 5.1e-52 208.0 147 73.5
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 3.3e-51 205.3 137 76.6
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 3.3e-51 205.3 145 75.2
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.5e-40 169.9 155 59.4
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.5e-40 169.9 149 56.4
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 4.5e-40 168.3 132 62.9
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 1.0e-39 167.2 133 62.4
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 1.0e-39 167.2 133 62.4
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 1.0e-39 167.2 153 55.6
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.0e-39 167.2 133 62.4
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.7e-39 166.4 153 58.8
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 5.0e-39 164.9 156 56.4
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 5.0e-39 164.9 128 63.3
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.1e-38 163.7 160 53.8
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.4e-38 163.3 134 61.9
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 3.2e-38 162.2 128 63.3
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 3.2e-38 162.2 128 63.3
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 4.2e-38 161.8 132 61.4
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 4.2e-38 161.8 132 61.4
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 1.2e-37 160.2 149 57.0
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 6.1e-37 157.9 128 60.9
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 6.1e-37 157.9 128 60.9
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 6.1e-37 157.9 143 55.9
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 7.9e-37 157.5 128 62.5
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.3e-36 156.8 128 59.4
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 1.8e-36 156.4 129 62.8
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 1.8e-36 156.4 129 62.8
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 2.3e-36 156.0 161 52.2
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.9e-35 152.9 127 58.3
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 1.9e-35 152.9 128 58.6
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.9e-35 152.9 128 58.6
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 2.5e-35 152.5 137 57.7
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 2.5e-35 152.5 149 53.7
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 3.3e-35 152.1 128 59.4
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 3.3e-35 152.1 151 55.0
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 7.4e-35 151.0 152 53.9
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 7.4e-35 151.0 151 54.3
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 9.7e-35 150.6 149 52.3
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 9.7e-35 150.6 128 59.4
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 3.1e-33 145.6 149 54.4
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 1.3e-26 123.6 115 56.5
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.2e-26 122.9 145 44.1
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 3.7e-26 122.1 130 49.2
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 1.4e-25 120.2 137 46.7
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.8e-25 119.8 134 47.0
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 9.1e-25 117.5 138 44.9
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 9.1e-25 117.5 140 46.4
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 2.6e-24 115.9 172 40.7
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 4.5e-24 115.2 139 44.6
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 5.9e-24 114.8 135 45.9
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 7.7e-24 114.4 143 45.5
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.3e-23 113.6 136 42.6
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.7e-23 113.2 146 44.5
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.9e-23 112.5 166 39.2
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 2.9e-23 112.5 132 44.7
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 3.8e-23 112.1 132 47.0
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 6.5e-23 111.3 139 44.6
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 6.5e-23 111.3 136 44.9
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 6.5e-23 111.3 141 43.3
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.4e-22 110.2 154 39.6
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.4e-22 110.2 138 43.5
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.9e-22 109.8 140 42.9
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.5e-22 109.4 140 42.9
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 3.2e-22 109.0 167 37.7
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 3.2e-22 109.0 140 44.3
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 3.2e-22 109.0 152 38.2
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 5.5e-22 108.2 163 39.3
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 7.2e-22 107.8 137 41.6
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 9.4e-22 107.5 132 46.2
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 9.4e-22 107.5 132 43.2
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 9.4e-22 107.5 135 46.7
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.2e-21 107.1 133 41.4
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.2e-21 107.1 133 41.4
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 1.6e-21 106.7 148 38.5
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.6e-21 106.7 135 39.3
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 2.1e-21 106.3 140 41.4
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 2.7e-21 105.9 148 41.2
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 2.7e-21 105.9 130 43.1
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 2.7e-21 105.9 172 38.4
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 2.7e-21 105.9 129 41.9
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.6e-21 105.5 139 40.3
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 3.6e-21 105.5 138 40.6
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 4.7e-21 105.1 139 41.0
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 4.7e-21 105.1 137 43.1
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 4.7e-21 105.1 142 39.4
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 6.1e-21 104.8 124 43.5
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 6.1e-21 104.8 138 42.8
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 7.9e-21 104.4 141 40.4
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 1.0e-20 104.0 137 42.3
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.0e-20 104.0 139 41.0
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.0e-20 104.0 141 44.7
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.4e-20 103.6 136 42.6
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.4e-20 103.6 136 41.9
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 1.4e-20 103.6 135 39.3
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 1.8e-20 103.2 140 42.9
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 1.8e-20 103.2 136 46.3
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 2.3e-20 102.8 146 39.7
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 2.3e-20 102.8 158 34.8
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 2.3e-20 102.8 132 42.4
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.9e-20 102.1 131 44.3
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 5.2e-20 101.7 145 41.4
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 5.2e-20 101.7 145 41.4
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 5.2e-20 101.7 132 40.2
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 5.2e-20 101.7 147 39.5
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 6.7e-20 101.3 139 38.8
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 6.7e-20 101.3 162 39.5
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 8.8e-20 100.9 150 42.0
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 1.1e-19 100.5 142 36.6
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 1.5e-19 100.1 135 42.2
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 2.6e-19 99.4 145 40.7
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 2.6e-19 99.4 131 39.7
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 2.6e-19 99.4 143 39.9
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 3.3e-19 99.0 146 38.4
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 4.4e-19 98.6 168 33.9
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.4e-19 98.6 130 43.1
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 4.4e-19 98.6 137 35.8
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 4.4e-19 98.6 166 36.1
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.4e-19 98.6 141 37.6
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.4e-19 98.6 141 37.6
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 5.7e-19 98.2 126 42.9
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 5.7e-19 98.2 142 40.1
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 5.7e-19 98.2 143 39.9
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 5.7e-19 98.2 145 40.0
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 5.7e-19 98.2 125 43.2
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 7.4e-19 97.8 78 60.3
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 7.4e-19 97.8 130 40.0
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 7.4e-19 97.8 140 43.6
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 9.7e-19 97.4 161 36.0
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 1.3e-18 97.1 140 36.4
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.2e-18 96.3 143 39.2
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.8e-18 95.1 121 44.6
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 4.8e-18 95.1 127 39.4
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 6.3e-18 94.7 136 40.4
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 8.2e-18 94.4 131 38.9
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.1e-17 94.0 146 37.0
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.4e-17 93.6 136 36.8
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.8e-17 93.2 139 39.6
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.8e-17 93.2 136 36.8
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 2.4e-17 92.8 157 34.4
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 2.4e-17 92.8 136 39.7
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 4.1e-17 92.0 151 37.1
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 5.3e-17 91.7 132 40.9
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 1.6e-16 90.1 138 35.5
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.6e-16 90.1 137 36.5
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.6e-16 90.1 138 38.4
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 3.5e-16 89.0 141 35.5
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 7.7e-16 87.8 151 38.4
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.0e-15 87.4 130 35.4
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.0e-15 87.4 151 38.4
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.3e-15 87.0 135 37.0
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.3e-15 87.0 152 38.8
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 8.5e-15 84.3 88 46.6
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.1e-14 84.0 123 37.4
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.5e-14 82.8 108 42.6
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 4.2e-14 82.0 139 36.7
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 9.4e-14 80.9 129 39.5
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.6e-13 80.1 138 38.4
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.0e-12 77.4 96 41.7
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.0e-12 77.4 161 28.6
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 3.0e-12 75.9 93 39.8
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 4.0e-12 75.5 146 34.9
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 7.5e-11 71.2 141 31.9
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 3.5e-08 62.4 96 33.3
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 3.8e-07 58.9 62 45.2
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 1.5e-06 57.0 100 32.0


User provided reference genes

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