Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 8.9e-113 410.2 199 100.0
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 1.4e-20 104.0 86 62.8
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.8e-20 103.6 106 53.8
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 5.2e-20 102.1 51 94.1
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 8.9e-20 101.3 51 92.2
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 8.9e-20 101.3 73 68.5
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 4.4e-19 99.0 51 88.2
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 1.3e-18 97.4 68 70.6
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 4.9e-18 95.5 63 71.4
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 7.8e-16 88.2 51 80.4
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 7.8e-16 88.2 51 80.4
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 7.8e-16 88.2 51 80.4
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 1.3e-15 87.4 51 78.4
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 1.7e-15 87.0 51 76.5
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 2.3e-15 86.7 59 69.5
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 2.3e-15 86.7 59 69.5
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 2.3e-15 86.7 51 76.5
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 3.9e-15 85.9 91 50.5
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 6.6e-15 85.1 67 59.7
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 6.6e-15 85.1 60 66.7
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 8.6e-15 84.7 56 73.2
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 8.6e-15 84.7 56 69.6
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 1.1e-14 84.3 60 66.7
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 1.1e-14 84.3 83 53.0
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.1e-14 84.3 64 62.5
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 1.1e-14 84.3 60 65.0
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 1.9e-14 83.6 46 80.4
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 2.5e-14 83.2 55 65.5
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 3.3e-14 82.8 54 72.2
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 3.3e-14 82.8 41 87.8
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 4.3e-14 82.4 92 46.7
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 4.3e-14 82.4 42 83.3
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 5.6e-14 82.0 64 60.9
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 5.6e-14 82.0 71 56.3
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 5.6e-14 82.0 77 51.9
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 7.3e-14 81.6 54 72.2
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 7.3e-14 81.6 60 63.3
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 9.5e-14 81.3 45 77.8
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.2e-13 80.9 41 85.4
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 1.2e-13 80.9 41 82.9
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.6e-13 80.5 93 46.2
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 1.6e-13 80.5 63 61.9
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 1.6e-13 80.5 109 44.0
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 2.1e-13 80.1 99 50.5
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 2.1e-13 80.1 42 83.3
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 2.1e-13 80.1 41 82.9
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 2.1e-13 80.1 41 80.5
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 2.1e-13 80.1 59 64.4
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 2.1e-13 80.1 59 64.4
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 2.8e-13 79.7 58 67.2
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 2.8e-13 79.7 40 87.5
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 2.8e-13 79.7 40 87.5
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 3.6e-13 79.3 58 62.1
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 4.7e-13 79.0 41 82.9
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 4.7e-13 79.0 44 79.5
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 6.2e-13 78.6 45 77.8
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 8.0e-13 78.2 59 62.7
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 8.0e-13 78.2 59 62.7
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 1.1e-12 77.8 79 51.9
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.4e-12 77.4 40 87.5
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.4e-12 77.4 41 82.9
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 1.8e-12 77.0 59 61.0
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 2.3e-12 76.6 74 50.0
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 3.1e-12 76.3 84 48.8
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 3.1e-12 76.3 58 62.1
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 4.0e-12 75.9 73 53.4
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 4.0e-12 75.9 56 66.1
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 4.0e-12 75.9 44 72.7
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 4.0e-12 75.9 41 78.0
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 4.0e-12 75.9 55 63.6
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 4.0e-12 75.9 55 63.6
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 4.0e-12 75.9 56 62.5
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 5.2e-12 75.5 40 77.5
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 5.2e-12 75.5 63 58.7
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 5.2e-12 75.5 60 61.7
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 5.2e-12 75.5 41 73.2
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 5.2e-12 75.5 40 80.0
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 6.8e-12 75.1 59 59.3
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 6.8e-12 75.1 41 80.5
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 6.8e-12 75.1 41 75.6
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 6.8e-12 75.1 41 73.2
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 8.9e-12 74.7 55 63.6
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 8.9e-12 74.7 73 53.4
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 8.9e-12 74.7 59 57.6
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 8.9e-12 74.7 59 57.6
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 1.5e-11 73.9 42 76.2
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 2.6e-11 73.2 39 79.5
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 2.6e-11 73.2 84 47.6
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.6e-11 73.2 39 76.9
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 5.8e-11 72.0 39 76.9
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 5.8e-11 72.0 39 76.9
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 5.8e-11 72.0 39 76.9
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 7.5e-11 71.6 40 70.0
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.2e-10 70.1 39 71.8
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 2.9e-10 69.7 55 60.0
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 4.9e-10 68.9 86 43.0
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 6.4e-10 68.6 39 71.8
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 6.4e-10 68.6 65 47.7
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 6.4e-10 68.6 43 62.8
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 1.1e-09 67.8 37 78.4
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 1.4e-09 67.4 43 60.5
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 1.9e-09 67.0 93 44.1
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.2e-08 64.3 76 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 1.2e-08 64.3 41 65.9
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 1.0e-07 61.2 57 49.1


User provided reference genes

Program Settings