Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G37080 Arabidopsis lyrata HOM05D006859 ORTHO05D007990 2.3e-112 409.1 230 100.0
AT4G17540 Arabidopsis thaliana HOM05D006859 ORTHO05D007990 1.5e-103 379.8 230 93.5
Carub.0007s2385 Capsella rubella HOM05D006859 ORTHO05D007990 8.5e-99 364.0 230 90.0
Thhalv10025654m.g Eutrema salsugineum HOM05D006859 ORTHO05D007990 5.9e-92 341.3 225 85.8
Sp7g16620 Schrenkiella parvula HOM05D006859 ORTHO05D007990 4.2e-90 335.1 223 86.1
CARHR224240 Cardamine hirsuta HOM05D006859 ORTHO05D007990 3.9e-88 328.6 228 85.1
A01p09620 Brassica napus HOM05D006859 ORTHO05D007990 3.3e-87 325.5 226 83.2
BraA01t00904Z Brassica rapa HOM05D006859 ORTHO05D007990 9.7e-87 323.9 226 82.7
BcaNung00082 Brassica carinata HOM05D006859 ORTHO05D007990 1.3e-86 323.6 225 82.2
BcaC09g51632 Brassica carinata HOM05D006859 ORTHO05D007990 2.8e-86 322.4 225 82.7
BolC1t01085H Brassica oleracea HOM05D006859 ORTHO05D007990 3.5e-84 315.5 226 82.3
C01p11190 Brassica napus HOM05D006859 ORTHO05D007990 5.9e-84 314.7 226 82.3
Aa31LG6G280 Aethionema arabicum HOM05D006859 ORTHO05D007990 4.0e-64 248.8 227 70.0
THA.LOC104798356 Tarenaya hassleriana HOM05D006859 ORTHO05D007990 2.4e-53 213.0 225 59.1
Gohir.D08G184600 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.0e-43 181.0 255 47.8
Gorai.004G193900 Gossypium raimondii HOM05D006859 ORTHO05D007990 1.3e-43 180.6 255 47.8
Duzib068G0861 Durio zibethinus HOM05D006859 ORTHO05D007990 9.5e-42 174.5 255 45.1
Gohir.A08G165800 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.2e-41 174.1 255 46.7
Potri.003G082200 Populus trichocarpa HOM05D006859 ORTHO05D007990 6.2e-41 171.8 253 46.6
CsaV3_3G049860 Cucumis sativus L. HOM05D006859 ORTHO05D007990 3.1e-40 169.5 251 45.8
Sabra03G0053000 Salix brachista HOM05D006859 ORTHO05D007990 6.8e-40 168.3 255 45.9
Duzib205G1414 Durio zibethinus HOM05D006859 ORTHO05D007990 4.4e-39 165.6 255 43.9
PGR031G1874 Punica granatum HOM05D006859 ORTHO05D007990 5.8e-39 165.2 252 45.2
MELO3C003330.2 Cucumis melo HOM05D006859 ORTHO05D007990 9.9e-39 164.5 251 45.4
Ciclev10021440m.g Citrus clementina HOM05D006859 ORTHO05D007990 2.2e-38 163.3 234 46.6
TPR.G31422 Trifolium pratense HOM05D006859 ORTHO05D007990 8.3e-38 161.4 248 45.6
Dinv28858 Davidia involucrata HOM05D006859 ORTHO05D007990 4.1e-37 159.1 259 43.2
CANSAT21G2559 Cannabis sativa HOM05D006859 ORTHO05D007990 9.2e-37 157.9 254 43.3
Actinidia25901 Actinidia chinensis HOM05D006859 ORTHO05D007990 1.6e-36 157.1 242 45.5
FvH4_5g20140 Fragaria vesca HOM05D006859 ORTHO05D007990 1.6e-36 157.1 254 45.3
MD00G1165000 Malus domestica HOM05D006859 ORTHO05D007990 2.7e-36 156.4 244 44.7
FAN08G0582 Fragaria x ananassa HOM05D006859 ORTHO05D007990 1.0e-35 154.5 255 45.5
Aqoxy7G00861 Aquilegia oxysepala HOM05D006859 ORTHO05D007990 2.3e-35 153.3 254 42.1
Lj2g0014108 Lotus japonicus HOM05D006859 ORTHO05D007990 2.3e-35 153.3 263 42.6
Medtr5g013280 Medicago truncatula HOM05D006859 ORTHO05D007990 3.0e-35 152.9 250 44.0
Prupe.5G059200 Prunus persica HOM05D006859 ORTHO05D007990 3.9e-35 152.5 255 42.0
QL12p009356 Quercus lobata HOM05D006859 ORTHO05D007990 3.9e-35 152.5 256 43.0
VMungo1215G2710 Vigna mungo HOM05D006859 ORTHO05D007990 3.9e-35 152.5 262 41.6
Gohir.D03G167400 Gossypium hirsutum HOM05D006859 ORTHO05D007990 8.6e-35 151.4 241 42.3
vmacro00041 Vaccinium macrocarpon HOM05D006859 ORTHO05D007990 1.1e-34 151.0 249 43.8
FAN18G2706 Fragaria x ananassa HOM05D006859 ORTHO05D007990 1.5e-34 150.6 255 44.7
Phvul.002G001000 Phaseolus vulgaris HOM05D006859 ORTHO05D007990 1.9e-34 150.2 254 42.5
RcHm_v2.0_Chr7g0205091 Rosa chinensis HOM05D006859 ORTHO05D007990 2.5e-34 149.8 256 44.5
Lj2C227G12 Lonicera japonica HOM05D006859 ORTHO05D007990 3.3e-34 149.4 251 44.2
Eucgr.D02124 Eucalyptus grandis HOM05D006859 ORTHO05D007990 5.6e-34 148.7 256 42.6
Nn1g00823 Nelumbo nucifera HOM05D006859 ORTHO05D007990 5.6e-34 148.7 247 41.7
CiPaw.11G069300 Carya illinoinensis HOM05D006859 ORTHO05D007990 7.3e-34 148.3 255 41.6
CSS0046225 Camellia sinensis var. sinensis HOM05D006859 ORTHO05D007990 9.5e-34 147.9 251 42.6
Cpa.g.sc89.10 Carica papaya HOM05D006859 ORTHO05D007990 9.5e-34 147.9 254 42.9
Gorai.003G177100 Gossypium raimondii HOM05D006859 ORTHO05D007990 1.6e-33 147.1 242 39.3
HanXRQChr06g0164541 Helianthus annuus HOM05D006859 ORTHO05D007990 1.6e-33 147.1 242 43.8
Manes.01G086700 Manihot esculenta HOM05D006859 ORTHO05D007990 1.6e-33 147.1 254 45.3
PSO675G5712 Papaver somniferum HOM05D006859 ORTHO05D007990 1.6e-33 147.1 253 42.7
Cc08_g11510 Coffea canephora HOM05D006859 ORTHO05D007990 2.1e-33 146.7 253 41.9
FAN04G1798 Fragaria x ananassa HOM05D006859 ORTHO05D007990 2.1e-33 146.7 254 43.7
PSO717G0098 Papaver somniferum HOM05D006859 ORTHO05D007990 2.1e-33 146.7 253 43.9
Hund11327 Selenicereus undatus HOM05D006859 ORTHO05D007990 2.1e-33 146.7 250 42.4
TAR636G0545 Trochodendron aralioides HOM05D006859 ORTHO05D007990 4.7e-33 145.6 258 42.6
Migut.A01048 Erythranthe guttata HOM05D006859 ORTHO05D007990 1.1e-32 144.4 260 40.4
RhsimUnG0092900 Rhododendron simsii HOM05D006859 ORTHO05D007990 1.1e-32 144.4 252 42.1
Atru.chr9.1231 Acer truncatum HOM05D006859 ORTHO05D007990 1.4e-32 144.1 256 43.8
MBI04_g28364_MAGBIO Magnolia biondii HOM05D006859 ORTHO05D007990 4.0e-32 142.5 254 40.6
Gohir.A03G005200 Gossypium hirsutum HOM05D006859 ORTHO05D007990 5.2e-32 142.1 241 41.1
Lsat_1_v5_gn_1_53480 Lactuca sativa HOM05D006859 ORTHO05D007990 1.5e-31 140.6 230 43.0
DCAR_004596 Daucus carota HOM05D006859 ORTHO05D007990 1.3e-30 137.5 253 41.1
TWI15G0070 Tripterygium wilfordii HOM05D006859 ORTHO05D007990 1.3e-30 137.5 254 39.8
EL10Ac5g12291 Beta vulgaris HOM05D006859 ORTHO05D007990 2.2e-30 136.7 254 40.6
Glyma.01G205600 Glycine max HOM05D006859 ORTHO05D007990 3.8e-30 136.0 255 42.4
MD04G1050900 Malus domestica HOM05D006859 ORTHO05D007990 6.4e-30 135.2 242 40.9
Oeu017213.1 Olea europaea HOM05D006859 ORTHO05D007990 1.1e-29 134.4 254 39.4
Zm00001eb391020 Zea mays HOM05D006859 ORTHO05D007990 1.4e-29 134.0 239 42.3
Psat2g176200 Pisum sativum HOM05D006859 ORTHO05D007990 4.2e-29 132.5 230 43.0
Glyma.11G037300 Glycine max HOM05D006859 ORTHO05D007990 9.2e-29 131.3 223 39.9
ATR0665G206 Amborella trichopoda HOM05D006859 ORTHO05D007990 7.8e-28 128.3 248 37.1
ECA236G3610 Erigeron canadensis HOM05D006859 ORTHO05D007990 1.3e-27 127.5 212 42.5
arahy.Tifrunner.gnm1.ann1.B2NILF Arachis hypogaea HOM05D006859 ORTHO05D007990 2.3e-27 126.7 234 42.3
arahy.Tifrunner.gnm1.ann1.WYE05V Arachis hypogaea HOM05D006859 ORTHO05D007990 2.3e-27 126.7 234 42.3
Os10g0563400 Oryza sativa ssp. japonica HOM05D006859 ORTHO05D007990 5.1e-27 125.6 249 37.8
HPP92_014892 Vanilla planifolia HOM05D006859 ORTHO05D007990 1.9e-26 123.6 255 36.9
Lalb_Chr16g0379391 Lupinus albus HOM05D006859 ORTHO05D007990 3.3e-26 122.9 254 40.2
AUR62018861 Chenopodium quinoa HOM05D006859 ORTHO05D007990 1.6e-25 120.6 241 38.2
Solyc06g060890.4 Solanum lycopersicum HOM05D006859 ORTHO05D007990 2.4e-24 116.7 263 39.2
PGSC0003DMG400024153 Solanum tuberosum HOM05D006859 ORTHO05D007990 3.4e-23 112.8 281 37.7
unitig_8.g3018 Utricularia gibba HOM05D000481 ORTHO05D007990 9.9e-23 111.3 224 39.3
Actinidia02186 Actinidia chinensis HOM05D006859 ORTHO05D007990 5.4e-21 105.5 236 37.7
Nitab4.5_0000506g0100 Nicotiana tabacum HOM05D006859 ORTHO05D007990 3.0e-19 99.8 231 38.1
Sed0000052 Sechium edule HOM05D006859 ORTHO05D007990 5.1e-19 99.0 151 41.7
Sopen06g021040 Solanum pennellii HOM05D006859 ORTHO05D007990 5.1e-19 99.0 245 37.1
Thecc.03G243500 Theobroma cacao HOM05D006859 ORTHO05D007990 6.6e-19 98.6 180 41.7
Peaxi162Scf00190g00099 Petunia axillaris HOM05D006859 ORTHO05D007990 1.9e-18 97.1 108 50.0
CAN.G62.4 Capsicum annuum HOM05D006859 ORTHO05D007990 9.6e-18 94.7 159 41.5
AUR62007150 Chenopodium quinoa HOM05D006859 ORTHO05D007990 9.6e-18 94.7 219 36.1
Nitab4.5_0003456g0040 Nicotiana tabacum HOM05D006859 ORTHO05D007990 2.8e-17 93.2 264 35.2
Oeu040677.2 Olea europaea HOM05D006859 ORTHO05D007990 2.4e-16 90.1 139 42.4
Hma1.2p1_0840F.1_g226470 Hydrangea macrophylla HOM05D006859 ORTHO05D007990 1.5e-15 87.4 271 29.2
SalBow6G1554 Salvia bowleyana HOM05D006859 ORTHO05D007990 1.7e-14 84.0 192 37.5
BcaC03g14076 Brassica carinata HOM05D006859 ORTHO05D007990 8.4e-14 81.6 74 63.5
ClCG09G012800 Citrullus lanatus HOM05D006859 ORTHO05D007990 1.4e-13 80.9 221 32.1
Sc01g0008110 Simmondsia chinensis HOM05D006859 ORTHO05D007990 1.9e-13 80.5 173 37.0
Cfa012667 Carpinus fangiana HOM05D006859 ORTHO05D007990 2.4e-13 80.1 228 34.2
SGA_v2.0_scaffold199G41240 Striga asiatica HOM05D006859 ORTHO05D007990 4.2e-13 79.3 183 36.6
CDE11G0841 Ceratophyllum demersum HOM05D006859 ORTHO05D007990 3.5e-12 76.3 185 36.8
Ca_24604_v3 Cicer arietinum L. HOM05D006859 ORTHO05D007990 4.6e-12 75.9 237 30.8
DCAR_008336 Daucus carota HOM05D002294 ORTHO05D002367 1.9e-10 70.5 157 35.0
HPP92_014890 Vanilla planifolia HOM05D006859 ORTHO05D007990 5.3e-08 62.4 80 42.5
GSVIVG01007347001 Vitis vinifera HOM05D006859 ORTHO05D007990 7.6e-07 58.5 41 63.4


User provided reference genes

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