Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 2.7e-263 911.4 442 100.0
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 1.8e-254 882.1 439 96.4
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 5.4e-251 870.5 439 95.0
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 7.2e-248 860.1 439 92.9
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 2.8e-244 848.2 439 92.0
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 4.9e-244 847.4 438 92.2
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.6e-242 842.4 431 92.6
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 3.5e-242 841.3 435 91.7
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 3.5e-242 841.3 435 91.7
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 5.9e-242 840.5 431 92.6
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 7.8e-242 840.1 435 91.3
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.5e-240 835.9 435 90.6
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 6.1e-239 830.5 446 89.5
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 4.0e-238 827.8 439 89.7
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 4.3e-232 807.7 433 87.3
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 5.8e-221 770.8 428 82.7
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.7e-220 769.2 435 83.0
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.9e-220 768.5 452 80.1
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.9e-220 768.5 437 81.9
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.9e-220 768.5 432 82.9
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 8.3e-220 766.9 435 82.3
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 8.3e-220 766.9 430 83.0
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 1.9e-219 765.8 432 82.2
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 3.2e-219 765.0 435 82.1
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 4.1e-219 764.6 435 82.3
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 5.4e-219 764.2 427 84.1
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 7.1e-219 763.8 439 81.1
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 1.2e-218 763.1 430 82.3
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 3.5e-218 761.5 432 82.2
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 6.0e-218 760.8 427 82.7
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 7.8e-218 760.4 439 82.5
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.0e-217 760.0 439 80.6
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 1.7e-217 759.2 438 81.1
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.3e-217 758.8 439 81.1
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 3.0e-217 758.4 436 81.4
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 6.6e-217 757.3 428 82.5
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 8.6e-217 756.9 439 79.7
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 8.6e-217 756.9 429 82.8
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.1e-216 756.5 435 80.9
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.1e-216 756.5 432 81.7
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.5e-216 756.1 428 81.8
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.9e-216 755.7 428 82.7
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.3e-216 755.0 428 81.8
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 3.3e-216 755.0 439 81.5
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 3.3e-216 755.0 430 81.6
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.3e-216 755.0 439 80.4
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.6e-216 754.2 430 81.2
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.6e-216 754.2 430 81.2
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 5.6e-216 754.2 435 80.0
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 5.6e-216 754.2 429 81.6
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.2e-215 753.1 428 81.3
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.6e-215 752.7 428 81.5
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 2.8e-215 751.9 432 79.9
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 3.6e-215 751.5 439 79.0
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.7e-215 751.1 428 81.3
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 4.7e-215 751.1 435 79.5
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 6.2e-215 750.7 433 80.4
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.8e-214 749.2 428 81.1
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 2.4e-214 748.8 439 79.7
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 5.2e-214 747.7 432 80.1
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 6.8e-214 747.3 430 79.8
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 1.2e-213 746.5 428 80.4
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.2e-213 746.5 432 80.1
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.5e-213 746.1 429 81.1
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 2.0e-213 745.7 435 80.0
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.0e-213 745.7 438 80.8
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.6e-213 745.3 432 79.9
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 7.6e-213 743.8 435 78.9
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 9.9e-213 743.4 433 80.6
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 1.3e-212 743.0 496 71.6
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.7e-212 742.7 433 80.4
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 9.2e-211 736.9 434 77.9
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 5.1e-209 731.1 434 78.8
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.5e-208 729.6 436 77.5
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 7.3e-208 727.2 499 70.9
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 7.3e-208 727.2 440 76.6
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 9.6e-208 726.9 467 73.4
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.2e-207 726.5 442 76.7
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 5.3e-206 721.1 435 76.3
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.2e-205 719.9 435 76.8
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 3.4e-205 718.4 439 76.3
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 7.6e-205 717.2 525 68.0
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 2.1e-202 709.1 411 80.8
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 3.5e-202 708.4 438 75.3
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 5.1e-201 704.5 430 75.6
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 2.4e-198 695.7 421 78.6
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 2.0e-197 692.6 430 75.1
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 4.5e-197 691.4 404 80.0
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 7.6e-197 690.6 430 74.2
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 8.4e-196 687.2 430 73.7
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 2.4e-195 685.6 398 80.2
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 9.3e-195 683.7 406 78.3
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 6.0e-194 681.0 426 75.1
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 8.7e-193 677.2 438 72.1
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 1.1e-190 670.2 390 79.7
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.1e-190 670.2 430 73.7
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.5e-189 666.4 441 69.8
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 4.5e-189 664.8 428 73.1
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 9.9e-189 663.7 431 71.9
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 3.2e-187 658.7 430 71.4
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 1.8e-185 652.9 426 71.1
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 3.3e-184 648.7 436 69.3
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 4.3e-184 648.3 356 87.9
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 2.2e-180 636.0 434 67.3
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 8.4e-180 634.0 433 68.1
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.1e-179 633.6 438 71.2
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.1e-174 617.1 330 86.1
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.0e-173 612.8 433 66.1
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 7.7e-173 610.9 426 67.1
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 2.9e-172 609.0 340 82.6
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 3.9e-169 598.6 338 83.4
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 6.7e-169 597.8 339 82.9
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 3.4e-165 585.5 437 62.5
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 3.6e-162 575.5 387 71.3
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 6.7e-161 571.2 438 61.9
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 6.7e-161 571.2 433 62.1
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.8e-159 565.8 434 65.7
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.8e-159 565.1 439 62.4
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.1e-158 563.9 425 60.9
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.8e-153 546.6 384 72.7
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.9e-148 529.3 353 71.4
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.9e-147 526.6 334 74.3
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.6e-146 523.5 296 82.1
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 8.8e-145 517.7 431 58.7
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 8.9e-129 464.5 431 52.4
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 7.1e-110 401.7 351 59.0
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 3.1e-105 386.3 239 75.7
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.5e-104 384.0 221 81.9
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 3.9e-92 342.8 239 68.2
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.6e-75 285.8 176 75.0
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 9.6e-75 285.0 157 85.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 2.1e-74 283.9 194 69.1
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 1.3e-68 264.6 144 83.3
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 6.9e-65 252.3 197 64.0
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.1e-60 236.1 131 84.0
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.0e-55 221.9 230 54.3
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.5e-51 207.2 113 83.2
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 4.5e-48 196.4 137 74.5
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.2e-47 194.1 108 76.9
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.2e-36 156.4 90 81.1
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.2e-34 151.0 93 76.3
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 3.5e-32 143.7 165 46.7
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 7.2e-30 136.0 82 79.3
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 1.4e-28 131.7 204 38.2
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.9e-24 116.3 247 34.0
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 1.1e-22 112.1 80 62.5
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.7e-21 107.5 83 61.4
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 1.4e-20 105.1 63 79.4
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 4.0e-20 103.6 72 59.7
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 2.2e-18 97.8 57 70.2
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 9.1e-17 92.4 132 42.4
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 5.6e-14 83.2 96 46.9
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 3.0e-12 77.4 38 78.9
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 4.1e-09 67.0 81 45.7
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 1.2e-08 65.5 46 60.9
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 7.3e-06 56.2 69 47.8


User provided reference genes

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